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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026789 ID=TCONS_00026789|Name=TCONS_00026789|organism=Clytia hemisphaerica|type=transcript|length=771bp
TTTATTTACACCCACAAGTTGAAGTAGGGTTTACTTAACTTCGATCAATT
CACTGACAATATATCATTGGGAAGGAAAGAAAGTGGCACCATGTTCTTCA
ACTGTTTCGCCATCCTTTCTTTGGCACTTGCTGTACAAGGCAATCCAGTA
CCAAACTGTGGTACTGTTGTGAAGAATCCAAGAATCGTAAACGGAGTGGA
TTCAAAAGCTGGACGCTGGCCCTGGATGacTAGACTAGCAACTACGGGTT
ATTACCTCGATTGCGGTGGCACACTTATCTCTGATCGCTGGGTGTTGAGT
GCTGCACATTGTTTCACTGCTGCGGATAAAGACTCACTTACCGCTACTTT
AGGTGACCTTACAATTACTCAGGACGAAGAAGGGGAGCAGATAAGAAACG
TTAAACAGATCATTCGACACCCGCAATACAATGATAACACCCTTGACAAC
GACTATTTGTTGATCGAACTTGACAGCCCTGTAACAATCACCGATCACGT
GCGGCCCGCTTGCTTACCATTTGGNTCTCAGATAACATCGtccctaaaaa
tttcaaaattccatttatgtaattgccagtatttacaggattattcataa
gataactgtaggttcaaagctacggatcaATTATGATGGTGACATTACAG
TACTGACATACATGACAACAAGATACTATATATTATTCAAAATTCTCACG
AAATATATtcaagctgaacccgactgagaacaacaatgcagtaatcaaat
tggctggaactttaattttcg Run BLAST on NCBI transcript from alignment at sc0000587:107576..113949- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00026789 ID=TCONS_00026789|Name=TCONS_00026789|organism=Clytia hemisphaerica|type=transcript|length=6374bp|location=Sequence derived from alignment at sc0000587:107576..113949- (Clytia hemisphaerica)
TTTATTTACACCCACAAGTTGAAGTAGGGTTTACTTAACTTCGATCAATT
CACTGACAATATATCATTGGGAAGGAAAGAAAGTGGCACCATGTTCTTCA
ACTGTTTCGCCATCCTTTCTTTGGCACTTGCTGTACAAGGTAAGAAATCA
TGATTCTTTTAAAAGCTGTCAGTAGCCGGCGTTCTCATGGGTGTCGGAAA
ATTTGTGTAGGAGAGCACATTTTTATTACAAAGTATTTATCTATCCATTA
CATTAAAAGATAATTACTTCGTAACAAAATTGTGCTCTTCTACAAATATT
TTACGACACCCTGAGAACGCTACTGAATGAGTTGAGTTTTTAGTAAGGAA
ATAAATGAAATCTATGATCTATCAAGCATTCTCAACAATCAAGGAGTGCC
GTCCGATTTTTTGCCATCAAGATGAACTCAGAGAAACCCTTAAGCAAATG
AGACCCCGAAGACTTTTGTGACCTTTTTTGAGAATTTTTTATTAAAGATT
TTAAACTTTTGAACATTAAAGATAGTTTTTAAAACCGCTANTGAGAATTT
TTTATTAAAGATTTTAAACTTTTGAACATTAAAGAAGGGTTAAAGATAGT
TTTTAAAACCGCTAGCAAAAAAATGTCGCTTGGTACCTCAAGATGACGCC
TCCTTTGGCTTCAAAAGATTCGTCAGATCCCAAAAATAGTTTGAAACTTT
ATTTAGCGGAAACTAAACCCACTTAAGTGCCTTACATGTTTTTTTTATAA
GCAAGTGTCTGTCCCTGTTCCAGGCTCGCATTATGCTTAGCATAATTTTC
AAACAATAGAGCCATTGTTAAGGTACCAAAAGTGGCCCTCGGTGAAACTT
TAAAGATCTAAAAAACACTCTGAATAATAGCAAGCCAATCCTTTGCCAAG
GAATCTTTATGACATTATTGATTCTTCTTAATTTTCATCGCTAATCAAAT
GTCAATTTAAAAGTGAATCTAAACTTAAATTTAATGACCCCCTCTGTCCA
ATAGATACCTAGGAGTAAATATTACGGAGCCAAACTATTTAAATTTTATA
ACAATACATTTGACAGGTTTATTCAGGGATATGTTATAGCGGAGCTGGAT
AACGCACATTTAAAAAAGGCTTGTTCTATCTCTGTCCCTGACATTAAAAT
TTGATATGAAATTTAACTTTTATAATTACAAACTCGTGAAATTTGGATTT
CCTCTTAGCTATTGATTCTGCTACTGCATTTATCGTTCACGATTAAAAAC
TTTTAATTATCAAGAGGGTCTGTAAAACATTGGTGAATGACAATTTAAAA
AAATGAAAAACATTATTTTCATTAATGAAGTTATAAGAAATTTCTTCTGT
CAGATTATAGATAGTACTTTTTCATTTGAAATACCGCGCTACACCGCGGG
GTGCCTCACTTTCTAACTGATATTTTCAGATAGCAAGTCGGTATGTCTGA
TTATGGAAAAAAATTCAAGTTAATTGAAACAATATTTGTCAAAATATTTA
CATCCGAAATTTTTAAAAAGAAATCATGAAAGCTTCTCAAATTCATAACA
CACGCTGATAAAAATAGATTTCATTTACAAGGAAGCTTTTGGGGTATCTT
CTACAAATATTATTTTGATGAAAAGCGGGAACATCATAGCAAAATATGTG
CAAACCTACTGCATGAATACTTTGTCTGCTTCATTTTTCTTATAAAAACA
GAACACTCAAGGGGACAGAGATGGATTTCTATTATCAACAGTTTACAATA
GAAAAGACAAAGAAGCAATCCGCTAAGGAATTCTCGTCCTTCATCCAGCT
CTGCTATAACATATCCCTGGTTATTGATTGACCTCCATGAAAAAGAGGTT
CAAAGGTTTGACACTTCTGTAAAAAAGGAGAGCTAGTTTGAATACCGTCN
TGGTTTATTGATTGACCTCCATGAAAAAGAGGTTCAAAGGTTTGACACTT
CTGTAAAAAAAGAGGGCTAGTTTAGATGCCGTCATCAGCAAAGTTCCTTG
AAGTCCATAATCAATCAGATGTGTGTGAAGAATAAATTTCTCTGATCTTC
TGGACTACCGTAACTTGGTAGACATCCCTCCTCTAATTCTGACACCCTTT
TTATCAGCTGAAATTGATAGAAAGGTTGAATTTGTTTTTCTTTGCTTAGT
GGTCAGAGAGGAATAGTCCTCTTTCAATCAGTCATTAAAGCTGTTATATT
ATTCCTGTCTCTAAAGAAGGGTGTCGGAAATAGACGAGGGATGTCGATAT
TAGACCAATTTACGGCAATGAAAGATACCTTATTTTTCAGGCAATCCAGT
ACCAAACTGTGGTACTGTTGTGAAGAATCCAAGAATCGTAAACGGAGTGG
ATTCAAAAGCTGGACGCTGGCCCTGGATGGTAAGTTAAAAAGTTTTTGCG
TGCACTCTTGAGACAAAAATCAATGGTAATAGTCAGGCATCTTTAGACAG
TCTTTTCTACCAACTTTTATCAAAAACAAGGGAAGGCAAGGAACCAGCTG
GCACACAACGTTGTTTTAACATTCACCTAACGTTATATGGCCGTTGTGAA
CGTTATAAAAACGTTGAAACAACGTTGTGTGCCAGCTTGGGACCGTCTGA
ACTAGGTCTANTTTTCTTTGCTTAGTGGTCAGAGAGGAATAATCCTCTTT
CAATCAGTCATTAAAGCTGTTATATTATTCCTGTCTCTAAAGAAGGGTGT
CGGAAATAGACGAGGGATGTCGATATTAGACCAATTTACGGTAATGAAAG
ATACCTTATTTTTCAGGCAATCCAGTACCAAACTGTGGTACTGTTGTGAA
GAATCCAAGAATCGTAAACGGAGTGGATTCAAAAGCTGGACGCTGGCCCT
GGATGGTAAGTTAAAAAGTTTTCGCGTGCACTCTTGAGACAAAAATCAAT
GGTAATAGTCAGGCAGCTTTAGGCAGTCTTTTCTACCAACTTTTATCAAA
AACAAGGGAAGGCAAGGAACCAGCTGGCACACAACGTTGTTTTAACATTC
ACCTAACGTTATATGGCCGTTGTGAACGTTATAAAAACGTTGAAACAACG
TTGTGTGCCAGCTTGGGACCGTCTGAACTAGGTCTAAACAACATTGTTTC
AACATTCAGCTAACGACCATACATTCATCTAACAATAGTAAACACATGGA
GTTTAAATCTCGAAGAGCTAGAAACGCTAGAAAGGCATCTCTTGAAGGGG
AAATGAAAGCCACTTTAATAGAGGGAATTTAGTTCGATTTTTAAATGTAA
AGGTTAAATCATATTTTAACTTGATTTCGGTCCGTTTGCCTCAACATTCT
CGCAGTCAGCGGCATCTGAGCAAATCACGCCATATCAGAGGGCGCCGTTC
GGCACTTTCCACGGTTCGGCAAACTCCTAGCTTTCATTCTCCTCGGATTA
ACAGAGTGTCTAGGTAACCTTTTTGCTGTAAGTGGAGCTGTGCAAATTCT
GGCCAGAAAATTTTTTTAAACCCACCCGCCCTACAAAGGTTGCAGGCAAC
TATCAGAATATTTATTGTTTATAAAAAGGGACAATTTTACTCAAAATATT
TCCTGTGTGTAGTTAGCCAAGAATCATGCCAAATAACGAAATACGAATCT
CAATTTCTTACTCCTCCGCGCTAATGAAAGTACAAGTTAAACTCAATTTT
TATTTCTTAATCTTATACACATTTTTTCATAAACAGCTCCAATTTTTGGG
TCAGGGATGCAATTGCTTAGCATTCTAGCTCATTTTCTGAAGAATTTGCT
TTGACCATCCCTGATATTATACCATACTTATTGAGTCTTCGGAGTCTTCT
TGGAGATTACCCCGGGGGGGGGGGACACTCCAGGTAAGTGACCTACCGGA
CGTGCGGCCCTTAAGGGTAGGATTTTTGGACTATGGAAAGTGCACTGTAA
GGGTTGATTTGTGAGCAAGGGAAAAAGTGCACTGTAAGGGTGTAAAATTT
GAGAAAAAAACATTTTGCCCTGAAAAGGGCAAAAAAATTCGAAAAATTGC
ACTATAAGGGTCGATTTTCAGCCAAATTTTTCCTGCAGTGTAAGGGTCCG
ATTTTAGAGACCTGATTTTTGGACGAACGTACGGTCGTTTTCAAAATCGA
GTTCCCCTCCCCCCGGGGAGATTACTTATTTCTCATCTGAAACGCCTAAA
ACACGTGGTTTTCAGACAAAACAAGAACAAATGTAATCACCAGATTTCGA
TTAGCTTGATTGGTACTTTATATGATAGAACTTTAAATTTCATTAAATTT
GAATCATAAATTTGACTTGCTAGAGGTTATTACTATCCCTACTCTCGGGT
ACCTAATAGCCGGGGGGAGCCCTAATTAATTTTTCAATATTTTCCACCCA
GGACATTCTTATTCCAACCCCCCCCCCCCCCAGTTTTGAGATTTTTTCCA
ACCCCCTGATTATTCCAAACCCCCGGGCTATTAGGTACCCAAGAGTGTGT
TTAAACTTACCTTTTCTTTTTCTAGACTAGACTAGCAACAAAATATTGGC
GTGATGGCGGGTGGGGGCTCTTATATAAGAGATCAAAAATTTGAATGGCT
AAAGGTTATTACTATCCCTATGTTTAATTTTACCTTTTCTTTTTTCTAGA
CTAGACTAGCAACTACGGGTTATTACCTCGATTGCGGTGGCACACTTATC
TCTGATCGCTGGGTGTTGAGTGCTGCACATTGTTTCACTGCTGCGGATAA
AGACTCACTTACCGCTACTTTAGGTATAGTAAAAAGCCCTATCGGCCAAA
ACTTAGTCGGCCTTAATTATTAGTTGGCCTTAATTATTAGTCGGCCTTAA
TTATTAGTCGGCCCTAATTTTAGTCACCTCGTCAAAATTTAGTCACTAAG
GGCCGACTAATAATTAAGTTTTGTCATTTTTAAATTTTTAGTCGGACCAA
ATTTTAGTCGGCCCAAATTCTTAGTCGGCCCTAATTTTAGTCACCAAGCC
AAAATTTAGTCACTTTAGGGCCGACTAACTATTGGCCGATAAGGTAGAAT
AGATTTATCGTTGGCCTTGTTGTATATATTGTACGTGTAAAGCCTAGTAA
TGTAACACTTTTTTCATCATTCAGATGATAGTTGACGGACTATACTATAA
CTAAACTAGACGTCACCCGCTTTTTTCTAAACAATTACTCTTATCTCCCG
AATAGACGGGGGGGGGGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNAATG
AACACGTAAAATAAGAACCAATACTAACAAAAAGGAAAATTTAACAAGTT
TAAGGTCTATCTACACTGTAATAAAATATTAAATTATTCGAATTTAATTA
GAAATCTTTATAAATTTGGTATCATTAGAAAGATATTAGTTAGTGGAACA
ATTTGCAATAAAAAAATCTTTAAAAGAATTCTAAAAATGAAGATGAAAAT
GAAGAAGAAAAAAATGAAGATCTTGTAAAAAAGTGCTATAACTATCATTT
TCATTAAAGTGAATCCTTGATCATCGAACGTCATCACTGTGAAAAAAATT
CTCAAAAATTATCATTCAGTCAAAAGATATCAAACAAAGTTATAAGCTAA
TTGACGTCTAAAAACGCTGTTTTCTGCTGTTTTCTGCTGTTTTTTTGGGT
CAATCACTTATCAACTTTGTATCATAACTTTATATTGAATAGATATTTTA
GCAAAATTTTTTTACAGTGCTGACCTCCTAAGATCAAAGAATCTTTCCAG
TGAAAATGAAAGTTATAGCACTTCTCTACGAGATCTTCATTTTTTTCTTC
TTCATTTTCATCTTCGTTTTTTGAATTTTTTTAAAGAACTTTTTACTTCA
AATTGTTCTACTTGCAAACATCTCTCCAACGATACCAAATTTATAAAGAT
TGAAGAATTCCTTCAAAAGTTATAGGTTAATGAAAGTGCACACTTACCGT
GAACAGACTTAAGTTAGTTATGTTATTCGTATTGACTTTATTGTTTGATT
TCTAGGTGACCTTACAATTACTCAGGACGAAGAAGGGGAGCAGATAAGAA
ACGTTAAACAGATCATTCGACACCCGCAATACAATGATAACACCCTTGAC
AACGACTATTTGTTGATCGAACTTGACAGCCCTGTAACAATCACCGATCA
CGTGCGGCCCGCTTGCTTACCATTTGGNTCTCAGATAACATCGTCCCTAA
AAATTTCAAAATTCCATTTATGTAATTGCCAGTATTTACAGGATTATTCA
TAAGATAACTGTAGGTTCAAAGCTACGGATCAATTATGATGGTGACATTA
CAGTACTGACATACATGACAACAAGATACTATATATTATTCAAAATTCTC
ACGAAATATATTCAAGCTGAACCCGACTGAGAACAACAATGCAGTAATCA
AATTGGCTGGAACTTTAATTTTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00026789-exon-sc0000587-1575043694:113811..113949 | TCONS_00026789-exon-sc0000587-1575043694:113811..113949 | Clytia hemisphaerica | exon |
| TCONS_00026789-exon-sc0000587-1575043694:111095..111183 | TCONS_00026789-exon-sc0000587-1575043694:111095..111183 | Clytia hemisphaerica | exon |
| TCONS_00026789-exon-sc0000587-1575043694:109227..109350 | TCONS_00026789-exon-sc0000587-1575043694:109227..109350 | Clytia hemisphaerica | exon |
| TCONS_00026789-exon-sc0000587-1575043694:107576..107994 | TCONS_00026789-exon-sc0000587-1575043694:107576..107994 | Clytia hemisphaerica | exon |
| TCONS_00026789-exon-sc0000587-1510915933:113811..113949 | TCONS_00026789-exon-sc0000587-1510915933:113811..113949 | Clytia hemisphaerica | exon |
| TCONS_00026789-exon-sc0000587-1510915933:111095..111183 | TCONS_00026789-exon-sc0000587-1510915933:111095..111183 | Clytia hemisphaerica | exon |
| TCONS_00026789-exon-sc0000587-1510915933:109227..109350 | TCONS_00026789-exon-sc0000587-1510915933:109227..109350 | Clytia hemisphaerica | exon |
| TCONS_00026789-exon-sc0000587-1510915933:107576..107994 | TCONS_00026789-exon-sc0000587-1510915933:107576..107994 | Clytia hemisphaerica | exon |
| TCONS_00026789-exon-sc0000587-1491911889:113811..113949 | TCONS_00026789-exon-sc0000587-1491911889:113811..113949 | Clytia hemisphaerica | exon |
| TCONS_00026789-exon-sc0000587-1491911889:111095..111183 | TCONS_00026789-exon-sc0000587-1491911889:111095..111183 | Clytia hemisphaerica | exon |
| TCONS_00026789-exon-sc0000587-1491911889:109227..109350 | TCONS_00026789-exon-sc0000587-1491911889:109227..109350 | Clytia hemisphaerica | exon |
| TCONS_00026789-exon-sc0000587-1491911889:107576..107994 | TCONS_00026789-exon-sc0000587-1491911889:107576..107994 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000587 | supercontig | sc0000587:107576..113949 - |
Blast
BLAST of TCONS_00026789 vs. Swiss-Prot (Human)
Match: PRSS8 (Prostasin OS=Homo sapiens GN=PRSS8 PE=1 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 3.024e-23 Identity = 49/139 (35.25%), Postives = 73/139 (52.52%), Query Frame = 1
Query: 106 FAILSLALAVQGNPVPNCGTVVKNPRIVNGVDSKAGRWPWMTRLATTGYYLDCGGTLISDRWVLSAAHCFTAAD-KDSLTATLGDLTITQDEEGEQIRNVKQIIRHPQYNDNTLDNDYLLIELDSPVTITDHVRPACLP 519
+L +G P CG V RI G + AG+WPW + G ++ CGG+L+S++WVLSAAHCF + K++ LG + E ++ +K II HP Y D L++L P+T + ++RP CLP
Sbjct: 21 LGLLRSGTGAEGAEAP-CG-VAPQARITGGSSAVAGQWPWQVSITYEGVHV-CGGSLVSEQWVLSAAHCFPSEHHKEAYEVKLGAHQLDSYSEDAKVSTLKDIIPHPSYLQEGSQGDIALLQLSRPITFSRYIRPICLP 156
The following BLAST results are available for this feature:
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