TCONS_00026795 (transcript) - C. hemisphaerica

Overview
NameTCONS_00026795
Unique NameTCONS_00026795
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2959

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00026795 ID=TCONS_00026795|Name=TCONS_00026795|organism=Clytia hemisphaerica|type=transcript|length=2959bp
CTCGAATCCGATAtggttttatttcattttctaagCAATTAGAAAAATAC
TATTGtttacaaaataaatttaagtAAGTTCAAGTAATGCTTCCAATAGC
TGTTCTCAAAGGTTACAAGTAAGTTTCAAAACGAAAAATATAATAACGTA
TTAGAAATCAACGAAGTTTAAAATGTAacgaatgaaaatgttttttgatg
aATCTTTCTCCTTAAAAGAGTTTTCATACGGTGTCAAATTGTGCAGCCAC
GATCCTGCAAATGCAATAATTTGGCGGAAATAAAcgaaaattctaacaag
gaaattcaataaaattatGGATATTGCACACCCAATAACAGTTTAACAAA
GACCATCATAGCAGATAACGACACCTTACAATGTAGGAGATGTGATAGAC
TTGTCCATTATGCTTGCTCTGAGCTATCGGCCTATCAGATTCAGCTTTGT
CTGCAATATAAAAGCCGGCGCTTCAAATGTGGAAATTGTGTTACAATAAC
GCCACTCTTACTTGAGGGGATTAAAACAAGCAGACAAAAAGTTCGCAGTA
ACATCACAACGAAAAAAGCAGATAAAGATGAACATCATGGATTGAAATTA
GGTTTCCACGAGAGAATAACCTCTCTAGAAAGAAAATTCGAGAGgctaat
gaataaaaaagacGTCAACAAAGAACGGAACAACAAACGATCTGAAACAC
AGCTCAACAacacagaaacaaaaaaacaatcatatgCAGAAGTCACCAAA
GAAGATCTACAAAAAGAAGAGGCGACCAtaaaaagtttcatcaaatcAGT
GAACGAAGAGGAGCGTTGGCTCAAATCAACCAAGTGCAATATCATGATGC
ATGATATAGGTGAAAACAAGAACGAAAACGAAGAAGAGCAACGAGTTGAT
GACAAAGATTTTATAGAAAGAATGCTGAAAAAACAAATGGGTTTCGATGT
GACGATAATCAAGGTAGAACGCATAGGTGCTCGTAAAGATGAAATGTATT
CAAATGAACGATGGAGACCATTAAAAGTTAGTCTCGAGAGTGAAGATGAA
AGGATTAGAATCCTTGCAACAGCCCACAAACTAGATAAAGATGATTTCAG
AGTAtcagacgatttttcaaggaaagaacGCGAGATAATAAAACGATGGC
ATcataaagcaaaagaaagaacagcaaaataaaaagacaagagtcatata
tggaaagtgagaggtaagtcctaggactaaactctatttaaagaaattta
cgacgGAAACAACATGATTATAAGAAGAGCGGGTTAGAGGCCCAGTGTGT
GCCTACCCTAACTGTAAAAACTCTAtaatctataaattgtaaagatgtac
tgtaagattgtttcatagaggtcaatagatctgagaaatacacttctata
aattaaGTTAAATTATTATagcaaaaataaagtttaagtAAAGTTTATAT
AGCCTTCAAAAATTGTgttcaaaatattcttaacttgttcttaataattt
ggccagcgaagcctcgCGTTCTTAAGAAACAGAACGTGTAAGTACATTCA
TCATACGAGATGGTTCAATTCAATGTTGAAATGAATGTTCATAATCAATG
TGTTTATTCTTCACAACAATCAGCGATGTTAATTTTTGCTTCAAACGAGG
TTTGCTTTTTCATGTTCCAAACATGAATAAAAAACtgcaaataaaaatta
aaatgagtTTGCGACATGAGTTTGGCGGAGCGTTTGATGCATTGTAAAAA
GGAGTTGAATTGTTCACAGATTGACGTGTTCATTACGTGGAATCCATTCA
AACGGTCACATCGAAAAGTGGAACCGCAAACGTGATTATAACCGTGAAAA
ATGTCATGGAAAAAACGAGTGCAACAAAAGAAAAGCCAGATTCACGATTG
CGACAGTACTCGTCCAGTTGACATCCAAAGTCATACAAAACAACATCTGG
CGGAAGTTCACAAAACATataaagagaagaaaatggGTCTTTGCGGCCTT
CAGAGAAGGGGATAACGTGGTAACCATAGCAATGGCCATGTAAGGGGCAG
AACCAGGCAAACAGATAGCTTGTGCCAGTTTTGCTGACAACAGGAAATTT
CTTACTGCATTCAGTTGATGGTTTTGATGCCTGATTCCGCTTATCAATTG
GGAAAGATCTTATTTTCCGGATCTGTTGTCCATGGTTGCTAAAATAGTAA
GCCCTACCATCGCGTGGAGGGTTGTATGTACCAGAAATAGGATTTGCACC
TTCAGGTTTTACGTCATGTGCGTGAACTTCTTTACATTTGTTGCAGCAGT
AACGTATCATGTCAAAAATATCTCTTGTGGGAGACTTGTGGACGGTCAAG
GAGCTCCTGATTAAAGTAGCAATCTCCATGTTATATGAAGTAAACAACGA
AATGAGCTCATGCACTTTCGATAACGATGAAAGCCCAAGAAGTGCAAACT
CTGAGGCTTGCAGACAAAACTCGACAATCTCAAAAGGTATAATTGTGTCG
ACGGAAGACGTTCTTGACAGTTGTTTGTAAACATTGGAGTAAGCCTTTTT
AAGATGGTCAACATCTGTTTCATTTCTTTGAGAAGCAAAAGGTTTTAACT
CGTCAGGGATGGCCTNAATAATTGTGTCGACGGAAGATGTTCTTGACAGT
TGTTTGTAAACATTGGAGTAAGCCTTTTTAAGATGGTCAACATCTGTTTC
ATTTCTTTGAGAAGCAAAAGGTTTTAACTCGTCAGGGATGGCCTCAAAGT
GCTCAGTCGTATCCTGATCAACTAATTCTGCAAATGCTGTTCTTGCTAAT
TGGTTTTTCAACGGGCAGCGATCCATAGCACCAAGAGTCTCCGTGGGATG
GTCATAACTTGGCTTCTCAATCGGAGTGACAAACACGTTTTTAAAGTTAG
TACCAATTTTGGTTCCGTCACATGCCAATacctaagaaataaagaaattg
tGAATCAGA
Run BLAST on NCBI

transcript from alignment at sc0000587:176915..180039-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00026795 ID=TCONS_00026795|Name=TCONS_00026795|organism=Clytia hemisphaerica|type=transcript|length=3125bp|location=Sequence derived from alignment at sc0000587:176915..180039- (Clytia hemisphaerica)
CTCGAATCCGATATGGTTTTATTTCATTTTCTAAGCAATTAGAAAAATAC
TATTGTTTACAAAATAAATTTAAGTAAGTTCAAGTAATGCTTCCAATAGC
TGTTCTCAAAGGTTACAAGTAAGTTTCAAAACGAAAAATATAATAACGTA
TTAGAAATCAACGAAGTTTAAAATGTAACGAATGAAAATGTTTTTTGATG
AATCTTTCTCCTTAAAAGAGTTTTCATACGGTGTCAAATTGTGCAGCCAC
GATCCTGCAAATGCAATAATTTGGCGGAAATAAACGAAAATTCTAACAAG
GAAATTCAATAAAATTATGGATATTGCACACCCAATAACAGTTTAACAAA
GACCATCATAGCAGATAACGACACCTTACAATGTAGGAGATGTGATAGAC
TTGTCCATTATGCTTGCTCTGAGCTATCGGCCTATCAGATTCAGCTTTGT
CTGCAATATAAAAGCCGGCGCTTCAAATGTGGAAATTGTGTTACAATAAC
GCCACTCTTACTTGAGGGGATTAAAACAAGCAGACAAAAAGTTCGCAGTA
ACATCACAACGAAAAAAGCAGATAAAGATGAACATCATGGATTGAAATTA
GGTTTCCACGAGAGAATAACCTCTCTAGAAAGAAAATTCGAGAGGCTAAT
GAATAAAAAAGACGTCAACAAAGAACGGAACAACAAACGATCTGAAACAC
AGCTCAACAACACAGAAACAAAAAAACAATCATATGCAGAAGTCACCAAA
GAAGATCTACAAAAAGAAGAGGCGACCATAAAAAGTTTCATCAAATCAGT
GAACGAAGAGGAGCGTTGGCTCAAATCAACCAAGTGCAATATCATGATGC
ATGATATAGGTGAAAACAAGAACGAAAACGAAGAAGAGCAACGAGTTGAT
GACAAAGATTTTATAGAAAGAATGCTGAAAAAACAAATGGGTTTCGATGT
GACGATAATCAAGGTAGAACGCATAGGTGCTCGTAAAGATGAAATGTATT
CAAATGAACGATGGAGACCATTAAAAGTTAGTCTCGAGAGTGAAGATGAA
AGGATTAGAATCCTTGCAACAGCCCACAAACTAGATAAAGATGATTTCAG
AGTATCAGACGATTTTTCAAGGAAAGAACGCGAGATAATAAAACGATGGC
ATCATAAAGCAAAAGAAAGAACAGCAAAATAAAAAGACAAGAGTCATATA
TGGAAAGTGAGAGGTAAGTCCTAGGACTAAACTCTATTTAAAGAAATTTA
CGACGGAAACAACATGATTATAAGAAGAGCGGGTTAGAGGCCCAGTGTGT
GCCTACCCTAACTGTAAAAACTCTATAATCTATAAATTGTAAAGATGTAC
TGTAAGATTGTTTCATAGAGGTCAATAGATCTGAGAAATACACTTCTATA
AATTAAGTTAAATTATTATAGCAAAAATAAAGTTTAAGTAAAGTTTATAT
AGCCTTCAAAAATTGTGTTCAAAATATTCTTAACTTGTTCTTAATAATTT
GGCCAGCGAAGCCTCGCGTTCTTAAGAAACAGAACGTGTAAGTACATTCA
TCATACGAGATGGTTCAATTCAATGTTGAAATGAATGTTCATAATCAATG
TGTTTATTCTTCACAACAATCAGCGATGTTAATTTTTGCTTCAAACGAGG
TTTGCTTTTTCATGTTCCAAACATGAATAAAAAACTGCAAATAAAAATTA
AAATGAGTTTGCGACATGAGTTTGGCGGAGCGTTTGATGCATTGTAAAAA
GGAGTTGAATTGTTCACAGATTGACGTGTTCATTACGTGGAATCCATTCA
AACGGTCACATCGAAAAGTGGAACCGCAAACGTGATTATAACCGTGAAAA
ATGTCATGGAAAAAACGAGTGCAACAAAAGAAGCCAGATTCACGATTGCG
ACAGTACTTTTGAGGAATGAGAAAAGGTACCCTTATGGCTCNCGTGTTCA
TTACGTGGAATCCATTCAAACGGTCACATCGAAAGGTGGAACCGCAAACG
TGATTATAACCGTGAAAAATGTCATGGAAAAAACGAGTGCAACAAAAGAA
GCCAGATTCACGATTGCGACAGTACTCGTCCAGTTGACATCCAAAGTCAT
ACAAAACAACATCTGGCGGAAGTTCACAAAACATATAAAGAGAAGAAAAT
GGGTCTTTGCGGCCTTCAGAGAAGGGGATAACGTGGTAACCATAGCAATG
GCCATGTAAGGGGCAGAACCAGGCAAACAGATAGCTTGTGCCAGTTTTGC
TGACAACAGGAAATTTCTTACTGCATTCAGTTGATGGTTTTGATGCCTGA
TTCCGCTTATCAATTGGGAAAGATCTTATTTTCCGGATCTGTTGTCCATG
GTTGCTAAAATAGTAAGCCCTACCATCGCGTGGAGGGTTGTATGTACCAG
AAATAGGATTTGCACCTTCAGGTTTTACGTCATGTGCGTGAACTTCTTTA
CATTTGTTGCAGCAGTAACGTATCATGTCAAAAATATCTCTTGTGGGAGA
CTTGTGGACGGTCAAGGAGCTCCTGATTAAAGTAGCAATCTCCATGTTAT
ATGAAGTAAACAACGAAATGAGCTCATGCACTTTCGATAACGATGAAAGC
CCAAGAAGTGCAAACTCTGAGGCTTGCAGACAAAACTCGACAATCTCAAA
AGGTATAATTGTGTCGACGGAAGACGTTCTTGACAGTTGTTTGTAAACAT
TGGAGTAAGCCTTTTTAAGATGGTCAACATCTGTTTCATTTCTTTGAGAA
GCAAAAGGTTTTAACTCGTCAGGGATGGCCTNAATAATTGTGTCGACGGA
AGATGTTCTTGACAGTTGTTTGTAAACATTGGAGTAAGCCTTTTTAAGAT
GGTCAACATCTGTTTCATTTCTTTGAGAAGCAAAAGGTTTTAACTCGTCA
GGGATGGCCTCAAAGTGCTCAGTCGTATCCTGATCAACTAATTCTGCAAA
TGCTGTTCTTGCTAATTGGTTTTTCAACGGGCAGCGATCCATAGCACCAA
GAGTCTCCGTGGGATGGTCATAACTTGGCTTCTCAATCGGAGTGACAAAC
ACGTTTTTAAAGTTAGTACCAATTTTGGTTCCGTCACATGCCAATACCTA
AGAAATAAAGAAATTGTGAATCAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015051XLOC_015051Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026795-exon-sc0000587-1575043694:178158..180039TCONS_00026795-exon-sc0000587-1575043694:178158..180039Clytia hemisphaericaexon
TCONS_00026795-exon-sc0000587-1575043694:176915..177991TCONS_00026795-exon-sc0000587-1575043694:176915..177991Clytia hemisphaericaexon
TCONS_00026795-exon-sc0000587-1510915933:178158..180039TCONS_00026795-exon-sc0000587-1510915933:178158..180039Clytia hemisphaericaexon
TCONS_00026795-exon-sc0000587-1510915933:176915..177991TCONS_00026795-exon-sc0000587-1510915933:176915..177991Clytia hemisphaericaexon
TCONS_00026795-exon-sc0000587-1491911889:178158..180039TCONS_00026795-exon-sc0000587-1491911889:178158..180039Clytia hemisphaericaexon
TCONS_00026795-exon-sc0000587-1491911889:176915..177991TCONS_00026795-exon-sc0000587-1491911889:176915..177991Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000587supercontigsc0000587:176915..180039 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.508678	0.396429	0.591825	0.35421	0	0.235138	0.695968	0.219126	0.381289	0.15981	0.404882	0.311139	0.46276	0.358682	0.206326	0.490947	0.22745	0.402165	0.521533	0.432768	1.11666	0.221559	0.438804	0.539277	0.244685	0.367088	0.289374	0.334786	0.720605	0.391763
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00026795 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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