TCONS_00026859 (transcript) - C. hemisphaerica

Overview
NameTCONS_00026859
Unique NameTCONS_00026859
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length784

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00026859 ID=TCONS_00026859|Name=TCONS_00026859|organism=Clytia hemisphaerica|type=transcript|length=784bp
tttggaTCTAAGGGATGCTTCCCTTTCCTCCTTTGATTTGACAGGTTGTT
CTTATTGTAGGTAAGTGGCACATAGAGGTTTCGGAGCTCGATCGTTTGTT
TTAGGAATAGGTCCCAACTCTCATTCACATCTAATTCAATCGACTTTTGG
ATGAATTCGATAGACCAATTGATGTGGCTTAGATGATATCTCATAAACTG
GTAGTTGGCTTTGCTGTATTGATATCCATCAAGCTCATTTTTAATTGTGA
AATAGCCATAGAATTTAAAGGAGAGGACACTGTGATCACTGAGATGGAGG
GGGGCAAGGTATTTTATCTCGGGAACTTGATTTTCTTCCCCTGTAAGGAT
GAGATCGAGTATTGATGGTTTGTCGGTGCCTCGTCGCCGTGTCGGTTCAA
GGACATGTTGGTATAAAAAACAGTCTCTTAAAGCATGAAGGAATTTCTCC
TCGTCGCTATCTTCTTCACAAGGTGAGGACCAATGGACCCAATCGATTTT
CTTATAGCTAAAGTCACCTTTAAGACATATATGAGTGTATTTCGGATTTA
GGCAGAGATCTTTTATGAGCTTATtcatgttcttattattttcaTCGAAG
ATGTTTGTTTCGGTTTTTGTCGGGCTTCTATAGAGACATCCGAGTAACAT
AGTGTCTTTGTTCTCCATTGCAATTTCTAACAGGCAAGTCTCCTTAAATT
CAACTTTCGTTTGTATTTGTAGAATGAGGTGATCAATAGACTTGTGGACT
AGAATGATGATTCCTCTCTTTTTTTGTATTCATA
Run BLAST on NCBI

protein sequence of TCONS_00026859-protein

>TCONS_00026859-protein ID=TCONS_00026859-protein|Name=TCONS_00026859-protein|organism=Clytia hemisphaerica|type=polypeptide|length=222bp
MENKDTMLLGCLYRSPTKTETNIFDENNKNMNKLIKDLCLNPKYTHICLK
GDFSYKKIDWVHWSSPCEEDSDEEKFLHALRDCFLYQHVLEPTRRRGTDK
PSILDLILTGEENQVPEIKYLAPLHLSDHSVLSFKFYGYFTIKNELDGYQ
YSKANYQFMRYHLSHINWSIEFIQKSIELDVNESWDLFLKQTIELRNLYV
PLTYNKNNLSNQRRKGKHPLDP
Run BLAST on NCBI

transcript from alignment at sc0000591:153248..154031

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00026859 ID=TCONS_00026859|Name=TCONS_00026859|organism=Clytia hemisphaerica|type=transcript|length=784bp|location=Sequence derived from alignment at sc0000591:153248..154031 (Clytia hemisphaerica)
TATGAATACAAAAAAAGAGAGGAATCATCATTCTAGTCCACAAGTCTATT
GATCACCTCATTCTACAAATACAAACGAAAGTTGAATTTAAGGAGACTTG
CCTGTTAGAAATTGCAATGGAGAACAAAGACACTATGTTACTCGGATGTC
TCTATAGAAGCCCGACAAAAACCGAAACAAACATCTTCGAtgaaaataat
aagaacatgaATAAGCTCATAAAAGATCTCTGCCTAAATCCGAAATACAC
TCATATATGTCTTAAAGGTGACTTTAGCTATAAGAAAATCGATTGGGTCC
ATTGGTCCTCACCTTGTGAAGAAGATAGCGACGAGGAGAAATTCCTTCAT
GCTTTAAGAGACTGTTTTTTATACCAACATGTCCTTGAACCGACACGGCG
ACGAGGCACCGACAAACCATCAATACTCGATCTCATCCTTACAGGGGAAG
AAAATCAAGTTCCCGAGATAAAATACCTTGCCCCCCTCCATCTCAGTGAT
CACAGTGTCCTCTCCTTTAAATTCTATGGCTATTTCACAATTAAAAATGA
GCTTGATGGATATCAATACAGCAAAGCCAACTACCAGTTTATGAGATATC
ATCTAAGCCACATCAATTGGTCTATCGAATTCATCCAAAAGTCGATTGAA
TTAGATGTGAATGAGAGTTGGGACCTATTCCTAAAACAAACGATCGAGCT
CCGAAACCTCTATGTGCCACTTACCTACAATAAGAACAACCTGTCAAATC
AAAGGAGGAAAGGGAAGCATCCCTTAGAtccaaa

Coding sequence (CDS) from alignment at sc0000591:153248..154031

>TCONS_00026859 ID=TCONS_00026859|Name=TCONS_00026859|organism=Clytia hemisphaerica|type=CDS|length=666bp|location=Sequence derived from alignment at sc0000591:153248..154031 (Clytia hemisphaerica)
ATGGAGAACAAAGACACTATGTTACTCGGATGTCTCTATAGAAGCCCGAC
AAAAACCGAAACAAACATCTTCGAtgaaaataataagaacatgaATAAGC
TCATAAAAGATCTCTGCCTAAATCCGAAATACACTCATATATGTCTTAAA
GGTGACTTTAGCTATAAGAAAATCGATTGGGTCCATTGGTCCTCACCTTG
TGAAGAAGATAGCGACGAGGAGAAATTCCTTCATGCTTTAAGAGACTGTT
TTTTATACCAACATGTCCTTGAACCGACACGGCGACGAGGCACCGACAAA
CCATCAATACTCGATCTCATCCTTACAGGGGAAGAAAATCAAGTTCCCGA
GATAAAATACCTTGCCCCCCTCCATCTCAGTGATCACAGTGTCCTCTCCT
TTAAATTCTATGGCTATTTCACAATTAAAAATGAGCTTGATGGATATCAA
TACAGCAAAGCCAACTACCAGTTTATGAGATATCATCTAAGCCACATCAA
TTGGTCTATCGAATTCATCCAAAAGTCGATTGAATTAGATGTGAATGAGA
GTTGGGACCTATTCCTAAAACAAACGATCGAGCTCCGAAACCTCTATGTG
CCACTTACCTACAATAAGAACAACCTGTCAAATCAAAGGAGGAAAGGGAA
GCATCCCTTAGAtcca
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015087XLOC_015087Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026859-proteinTCONS_00026859-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026859-exon-sc0000591-1491911889:153248..154031TCONS_00026859-exon-sc0000591-1491911889:153248..154031Clytia hemisphaericaexon
TCONS_00026859-exon-sc0000591-1510915933:153248..154031TCONS_00026859-exon-sc0000591-1510915933:153248..154031Clytia hemisphaericaexon
TCONS_00026859-exon-sc0000591-1575043694:153248..154031TCONS_00026859-exon-sc0000591-1575043694:153248..154031Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000591supercontigsc0000591:153248..154031 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.01278	1.01159	1.15843	1.29732	0.43277	0.305333	0.675471	0.556731	0.431837	0.450819	0.250043	0.517972	0.56125	0.242503	0.236994	0.33659	0	0.151242	0.288112	0.445095	0.119311	0.642517	0	0.336696	0.954694	1.01741	12.5128	13.7373	2.31549	1.91774
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005135Endo/exonuclease/phosphatase
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00026859 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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