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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026878 ID=TCONS_00026878|Name=TCONS_00026878|organism=Clytia hemisphaerica|type=transcript|length=4305bpRun BLAST on NCBI protein sequence of TCONS_00026878-protein >TCONS_00026878-protein ID=TCONS_00026878-protein|Name=TCONS_00026878-protein|organism=Clytia hemisphaerica|type=polypeptide|length=409bp MVCLRETLFVGILISAAILLHQAGQSNGNIHRAVPGTVQGNVLRTQKVGKRun BLAST on NCBI transcript from alignment at sc0000594:108580..155593+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00026878 ID=TCONS_00026878|Name=TCONS_00026878|organism=Clytia hemisphaerica|type=transcript|length=47014bp|location=Sequence derived from alignment at sc0000594:108580..155593+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000594:108580..155593+ >TCONS_00026878 ID=TCONS_00026878|Name=TCONS_00026878|organism=Clytia hemisphaerica|type=CDS|length=11070bp|location=Sequence derived from alignment at sc0000594:108580..155593+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00026878 vs. Swiss-Prot (Human)
Match: S39AD (Zinc transporter ZIP13 OS=Homo sapiens GN=SLC39A13 PE=1 SV=3) HSP 1 Score: 170.244 bits (430), Expect = 3.735e-45 Identity = 89/150 (59.33%), Postives = 108/150 (72.00%), Query Frame = 2
Query: 980 IKVIGYLNLIANCSDNFTHGLAVAGSFLVSVPVGICTTFAILLHEIPHEIGDFAILLKAGFKRWEAAKGQMLTASGAIFGCLFGLIAES----------AGDASSWVLPYTSGGFLYISLVTLVPDLLKEEDWNESLKQIFFLLLGIACM 1399
IKV GYLNL+AN DNFTHGLAVA SFLVS +G+ TT AILLHEIPHE+GDFAILL+AGF RW AAK Q+ TA G + G F + +S A + ++WVLP+TSGGFLYI+LV ++PDLL+EED SL+Q+ L GI M
Sbjct: 214 IKVSGYLNLLANTIDNFTHGLAVAASFLVSKKIGLLTTMAILLHEIPHEVGDFAILLRAGFDRWSAAKLQLSTALGGLLGAGFAICTQSPKGVVGCSPAAEETAAWVLPFTSGGFLYIALVNVLPDLLEEEDPWRSLQQLLLLCAGIVVM 363 The following BLAST results are available for this feature:
BLAST of TCONS_00026878 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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