|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026879 ID=TCONS_00026879|Name=TCONS_00026879|organism=Clytia hemisphaerica|type=transcript|length=1579bp
CCTTACGCTATATACGACGACGAAGATGCTAGCACACATTATTTTTTCGT
CCCTGCTACTAAAGACCGTCAAACATTTATGAGAGCTTTTCAAGAACTTA
ACAATATGCCAAAATCGAAAACCAACATGAACCCATCTTTATCACCGACT
TGTTCAAGAAATAGTAGTGGATATATTAACGATAGAGATTTGAATCGTAA
AACGACTTGTCCGACAAGGACATCAAGGACTAGAGCCAAATCATGTAGCT
CATACCCTACAAATAAATCACCTACACATACACCTTCATCTACGCCacaa
ttattaaaaaattcttCAGGACGTTTAAAACATATTCCGCCACCGCCAAC
AAGTTGTAATACTACTAACCATCTTTATCACCGACTTGTTCAAGAAATAG
TAGTGGATATATTAACGATAGAGATTTGAATCGTAAAACGACTTGTCCGA
CAAGGACATCAAGGACTAGAGCCAAATCATGTAGCTCATACCCTACAAAT
AAATCACCTACACATACACCTTCATCTACGCCacaattattaaaaaattc
ttCAGGACGTTTAAAACATATTCCGCCACCGCCAACAAGTTGTAATACTA
CTAAATTGAACGCTAAAAATCCTTCATCTCGTTTATTATCTTCAACAAAT
ACACAAAACACTTTTCCAGATTATAACACTCAAACTGAGGATGATTACTG
TCTTATAAAAGCTAATACCAAATCCAACTTCTCACCTTCTAAAAACACCT
GCAGCACTCAACAAAAAGACCATTATGTGAAATTCAAAGATACCCAACAT
TATAAAGAACTTATTAAGAAAAACACAATGGCTGAATACCAAAACGGCAG
TATAGAAACTGaatgtttaaaaaagaaaaagtcattaaaaCGTAATGGAG
TAATAGACACTTGTACATGCATGTGGTGTATAAAATCAGCTAATTTTAAG
GATGAAAAAGGGGAATTAATAGAACCATGCTCTTGTCAGGGCTCCACGAA
ATCTGTAGTTGGACGTTACGTTTGTATGGGACTTATGGCAATTTTCTTGC
CCTGTATGTTATGTTATTTGCCTGCAAAGGCATGTTGCGGTAGTAATCGT
AAatggaaacaatcaaaactCTCTCAAGATGATACATATGTATATTACCA
TTCTAATAACAATAAACCATTATAGCACACACATATAACATTTATCgaat
gtttttctctttttccttCTACCCTGTGATACTTATTTCCAAGAGCGATT
TTGTGTGTTTTTGACAGGCTTTTCAGAGTGAGACCCTAGATGGTATACAC
CGTTATTTCGACATCTATATAACGCTAGATGGACGTTATAACAACGTTCA
ACGTTACGTACAGTTTGGGATGTAAGATGTAGTATAAGAGATATTGAAAT
AACTTTTTCACTTTGCCAAtgtaaaaatgagaattttctcGGTCCTGTCA
CTAAACTGAataaattttattcaacttCTAAGTCCCcaaaaatgttattt
tgttcaaaaaaagaGCTTTTAtattattaaaaaattaaattactaTGCAg
aataagaaattttatttattatattcCCG Run BLAST on NCBI transcript from alignment at sc0000594:153194..155593+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00026879 ID=TCONS_00026879|Name=TCONS_00026879|organism=Clytia hemisphaerica|type=transcript|length=2400bp|location=Sequence derived from alignment at sc0000594:153194..155593+ (Clytia hemisphaerica)
CCTTACGCTATATACGACGACGAAGATGCTAGCACACATTATTTTTTCGT
CCCTGCTACTAAAGACCGTCAAACATTTATGAGAGCTTTTCAAGAACTTA
ACAATATGCCAAAATCGAAAACCAACATGAACCCATCTTTATCACCGACT
TGTTCAAGAAATAGTAGTGGATATATTAACGATAGAGATTTGAATCGTAA
AACGACTTGTCCGACAAGGACATCAAGGACTAGAGCCAAATCATGTAGCT
CATACCCTACAAATAAATCACCTACACATACACCTTCATCTACGCCacaa
ttattaaaaaattcttCAGGACGTTTAAAACATATTCCGCCACCGCCAAC
AAGTTGTAATACTACTAAATTGAACGCTAAAAATCCTTCATCTCGTTTAT
TATCTTCAACAAATACACAAAACACTTTTCCAGATTATAACACTCAAACT
GAGGATGATTACTGTCTTATAAAAGCTAATACCAAATCCAACTTCTCACC
TTCTAAAAACACCTGCAGCACTCAACAAAAAGACCATTATGTGNAGAAAG
TTCGTTTCATGTCAATGTTGTTATTGCTATTTCGTGTTTTCTTGCAGATG
TGTactttaagattttttaataaACTTTTATGACTTCGATTTCATACTTT
GGAATATATttgatttgtgttttttttggtATCTTAATAAAAAAAGCTTA
TTATGAAAAAGACATGTCCATTCATTTCAGATGTAATAGAGTACATTTTG
TGAAATCATTTTTCATACTTTGTTATAAGATTGAAGCGATTTGGTACGAT
TTATAGTTTTCTTTTGTGATACAAGGGTGAGAAGAGTAAGCGCGCGTTTT
TTCAGATATAGTCTCTCCCTTGATACAGCATATATACATTATtataactg
ttttaaattttacttaaaCTCAACTGAttcttaattattttttcagcaAT
AAACACGACAtgttaataaaatgataaaCGAAGATTATATGAACCTTCCC
GGTGTGGACAGAAGCACTAAACCATcaacatcaacaacaacaaagaaatT
TATCGACCCTTACGCTATATACGACGACGAAGATGCTAGCACACATTATT
TTTTCGTCCCTGCTACTAAAGACCGTCAAACATTTATGAGAGCTTTTCAA
GAACTTAACAATATGCCAAAATCGAAAACCAACATGAACCCATCTTTATC
ACCGACTTGTTCAAGAAATAGTAGTGGATATATTAACGATAGAGATTTGA
ATCGTAAAACGACTTGTCCGACAAGGACATCAAGGACTAGAGCCAAATCA
TGTAGCTCATACCCTACAAATAAATCACCTACACATACACCTTCATCTAC
GCCacaattattaaaaaattcttCAGGACGTTTAAAACATATTCCGCCAC
CGCCAACAAGTTGTAATACTACTAAATTGAACGCTAAAAATCCTTCATCT
CGTTTATTATCTTCAACAAATACACAAAACACTTTTCCAGATTATAACAC
TCAAACTGAGGATGATTACTGTCTTATAAAAGCTAATACCAAATCCAACT
TCTCACCTTCTAAAAACACCTGCAGCACTCAACAAAAAGACCATTATGTG
AAATTCAAAGATACCCAACATTATAAAGAACTTATTAAGAAAAACACAAT
GGCTGAATACCAAAACGGCAGTATAGAAACTGaatgtttaaaaaagaaaa
agtcattaaaaCGTAATGGAGTAATAGACACTTGTACATGCATGTGGTGT
ATAAAATCAGCTAATTTTAAGGATGAAAAAGGGGAATTAATAGAACCATG
CTCTTGTCAGGGCTCCACGAAATCTGTAGTTGGACGTTACGTTTGTATGG
GACTTATGGCAATTTTCTTGCCCTGTATGTTATGTTATTTGCCTGCAAAG
GCATGTTGCGGTAGTAATCGTAAatggaaacaatcaaaactCTCTCAAGA
TGATACATATGTATATTACCATTCTAATAACAATAAACCATTATAGCACA
CACATATAACATTTATCgaatgtttttctctttttccttCTACCCTGTGA
TACTTATTTCCAAGAGCGATTTTGTGTGTTTTTGACAGGCTTTTCAGAGT
GAGACCCTAGATGGTATACACCGTTATTTCGACATCTATATAACGCTAGA
TGGACGTTATAACAACGTTCAACGTTACGTACAGTTTGGGATGTAAGATG
TAGTATAAGAGATATTGAAATAACTTTTTCACTTTGCCAAtgtaaaaatg
agaattttctcGGTCCTGTCACTAAACTGAataaattttattcaacttCT
AAGTCCCcaaaaatgttattttgttcaaaaaaagaGCTTTTAtattatta
aaaaattaaattactaTGCAgaataagaaattttatttattatattcCCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00026879-exon-sc0000594-1491911889:153194..153561 | TCONS_00026879-exon-sc0000594-1491911889:153194..153561 | Clytia hemisphaerica | exon |
| TCONS_00026879-exon-sc0000594-1510915933:153194..153561 | TCONS_00026879-exon-sc0000594-1510915933:153194..153561 | Clytia hemisphaerica | exon |
| TCONS_00026879-exon-sc0000594-1575043694:153194..153561 | TCONS_00026879-exon-sc0000594-1575043694:153194..153561 | Clytia hemisphaerica | exon |
| TCONS_00026879-exon-sc0000594-1491911889:154383..155593 | TCONS_00026879-exon-sc0000594-1491911889:154383..155593 | Clytia hemisphaerica | exon |
| TCONS_00026879-exon-sc0000594-1510915933:154383..155593 | TCONS_00026879-exon-sc0000594-1510915933:154383..155593 | Clytia hemisphaerica | exon |
| TCONS_00026879-exon-sc0000594-1575043694:154383..155593 | TCONS_00026879-exon-sc0000594-1575043694:154383..155593 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000594 | supercontig | sc0000594:153194..155593 + |
Blast
The following BLAST results are available for this feature:
|
