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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026882 ID=TCONS_00026882|Name=TCONS_00026882|organism=Clytia hemisphaerica|type=transcript|length=799bp
TGTGAATGGGAGGAGACATGCATCAACccaaacaaaaaatgtattcCAAA
CTACTCTAATGGTTCTTATGAATGTGTGTGCGAGCCTATTGGTAAATACG
ACATTCATTGCATAAATAGAAACATCGCATTTCAAAGACCAGTCAGTTTA
TCGGAACTACAACCGGGTCGTGGGAAACCTGCGTTTGTTACCGATGGTTA
TAAAGGAGAATTGTGCAATGATTTCTCAACCAATCTTATTCACTCGAAAG
CGGGAACTATGGAAATTTGGCTGAGAATTGATTTGGGTGGAATgaaacaa
atcaaatttattgatattttcGATCGTACAATAGGAGCACCTCATCATCA
ACGACTTGCTTTTACAGATATTATTGTGTATGGTCAGAATCCTATGGATA
ACCGCCAGCTTTGCAGTACTATAACATTGCAAGATACTGGAAATAGTGAT
AAGGTTTTTAAAGTCTGTAACGAGATTTTGACTGGGAGTGGAGTTGAACT
GTACAAGGCCCCCGGTAGATGGCAAATGATTCATCTTTGTGAAATAGCTG
TCTACGGGCCTATAGattaaatttcattatttttatccATGTCATATTAC
CCTCTAACCTACCCCACGGCACGCATTAGCCTAATTTATAGAATTCGTGC
ATCTGTTACATGCGTAAAAAAGTATtaagtcgaaacacaactatgagtaa
aAAGCTTATGTGCATATtcacaaaattatttttgagttttccctattttt
ccgTTGATTTTAAGGATAGCTAAATTTTTGCAACAGGAGAGTAATAAGA Run BLAST on NCBI protein sequence of TCONS_00026882-protein >TCONS_00026882-protein ID=TCONS_00026882-protein|Name=TCONS_00026882-protein|organism=Clytia hemisphaerica|type=polypeptide|length=189bp
CEWEETCINPNKKCIPNYSNGSYECVCEPIGKYDIHCINRNIAFQRPVSL
SELQPGRGKPAFVTDGYKGELCNDFSTNLIHSKAGTMEIWLRIDLGGMKQ
IKFIDIFDRTIGAPHHQRLAFTDIIVYGQNPMDNRQLCSTITLQDTGNSD
KVFKVCNEILTGSGVELYKAPGRWQMIHLCEIAVYGPID Run BLAST on NCBI transcript from alignment at sc0000594:9293..10836- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00026882 ID=TCONS_00026882|Name=TCONS_00026882|organism=Clytia hemisphaerica|type=transcript|length=1544bp|location=Sequence derived from alignment at sc0000594:9293..10836- (Clytia hemisphaerica)
TGTGAATGGGAGGAGACATGCATCAACCCAAACAAAAAATGTATTCCAAA
CTACTCTAATGGTTCTTATGAATGTGTGTGCGAGCCTATTGGTAAATACG
ACATTCATTGCATAAGTAAGTATTTTCAATGAGATAAAATGATAAGTATA
AGATTCCGAAAATGAATTTTTTTTGACAATTTTAAGATGAACAGTAAGAT
TCAGTATAGAACAAATTCATTTCAATTTTTAAAAGCAGCACTCTCCCATT
TTGCTTTTACGGGATTCGCTATTTTATCAAGATTTTGTACCAGTTGTAAT
ACTTTGCTCACCGATGAATTAAACCTTCCTCCGATATAATCATACACTGT
GATATGATATTCATTGTGGGATCTGGGATAACGTATTCATGACAAATGGT
ACAAAATTTTCGATTTATAGTTTTCTAATGGATTTCTAATTACATAAGAA
TATGTATATTATGGTCTCAGCTTACTTGATTTCACTGAATCTTTCCTCTG
TCTCTTATTCGTGATTTGATTCGTACGGTTTTCATCCAAGATCCTAGATG
ATTGCTATGGTTACTTTTGTTGTGCGTTGAATGAGATGGGTTTTATTGAA
GGGTTTCAAGGAAATAGAGACAGAACAGGTTTCAAATCTCCCAGCTCGCC
GTCCAGCCCTNAGGGTTTCAAGGAAATAGAGACAGAACAGGTTTCAAATC
TCCCAGTTCGCCGTCCAGCCCTTTCCCCGTGTATCCCAGGCTTTATTTAC
GTTCCTGATGAGGACAGAGCATACGGATATTATCTGACGCTATCAGTAAA
CATTAATAAGCCGATAATTATGCGGTTTGTTCACGATCACCAATATAAAT
TTCATTTCAGATAGAAACATCGCATTTCAAAGACCAGTCAGTTTATCGGA
ACTACAACCGGGTCGTGGGAAACCTGCGTTTGTTACCGATGGTTATAAAG
GAGAATTGTGCAATGATTTCTCAACCAATCTTATTCACTCGAAAGCGGGA
ACTATGGAAATTTGGCTGAGAATTGATTTGGGTGGAATGAAACAAATCAA
ATTTATTGATATTTTCGATCGTACAATAGGAGCACCTCATCATCAACGAC
TTGCTTTTACAGATATTATTGTGTATGGTCAGAATCCTATGGATAACCGC
CAGCTTTGCAGTACTATAACATTGCAAGATACTGGAAATAGTGATAAGGT
TTTTAAAGTCTGTAACGAGATTTTGACTGGGAGTGGAGTTGAACTGTACA
AGGCCCCCGGTAGATGGCAAATGATTCATCTTTGTGAAATAGCTGTCTAC
GGGCCTATAGATTAAATTTCATTATTTTTATCCATGTCATATTACCCTCT
AACCTACCCCACGGCACGCATTAGCCTAATTTATAGAATTCGTGCATCTG
TTACATGCGTAAAAAAGTATTAAGTCGAAACACAACTATGAGTAAAAAGC
TTATGTGCATATTCACAAAATTATTTTTGAGTTTTCCCTATTTTTCCGTT
GATTTTAAGGATAGCTAAATTTTTGCAACAGGAGAGTAATAAGA Coding sequence (CDS) from alignment at sc0000594:9293..10836- >TCONS_00026882 ID=TCONS_00026882|Name=TCONS_00026882|organism=Clytia hemisphaerica|type=CDS|length=1140bp|location=Sequence derived from alignment at sc0000594:9293..10836- (Clytia hemisphaerica)
ATAGAAACATCGCATTTCAAAGACCAGTCAGTTTATCGGAACTACAACCG
GGTCGTGGGAAACCTGCGTTTGTTACCGATGGTTATAAAGGAGAATTGTG
CAATGATTTCTCAACCAATCTTATTCACTCGAAAGCGGGAACTATGGAAA
TTTGGCTGAGAATTGATTTGGGTGGAATGAAACAAATCAAATTTATTGAT
ATTTTCGATCGTACAATAGGAGCACCTCATCATCAACGACTTGCTTTTAC
AGATATTATTGTGTATGGTCAGAATCCTATGGATAACCGCCAGCTTTGCA
GTACTATAACATTGCAAGATACTGGAAATAGTGATAAGGTTTTTAAAGTC
TGTAACGAGATTTTGACTGGGAGTGGAGTTGAACTGTACAAGGCCCCCGG
TAGATGGCAAATGATTCATCTTTGTGAAATAGCTGTCTACGGGCCTATAG
ATTAATGTGAATGGGAGGAGACATGCATCAACCCAAACAAAAAATGTATT
CCAAACTACTCTAATGGTTCTTATGAATGTGTGTGCGAGCCTATTGGTAA
ATACGACATTCATTGCATAAATAGAAACATCGCATTTCAAAGACCAGTCA
GTTTATCGGAACTACAACCGGGTCGTGGGAAACCTGCGTTTGTTACCGAT
GGTTATAAAGGAGAATTGTGCAATGATTTCTCAACCAATCTTATTCACTC
GAAAGCGGGAACTATGGAAATTTGGCTGAGAATTGATTTGGGTGGAATGA
AACAAATCAAATTTATTGATATTTTCGATCGTACAATAGGAGCACCTCAT
CATCAACGACTTGCTTTTACAGATATTATTGTGTATGGTCAGAATCCTAT
GGATAACCGCCAGCTTTGCAGTACTATAACATTGCAAGATACTGGAAATA
GTGATAAGGTTTTTAAAGTCTGTAACGAGATTTTGACTGGGAGTGGAGTT
GAACTGTACAAGGCCCCCGGTAGATGGCAAATGATTCATCTTTGTGAAAT
AGCTGTCTACGGGCCTATAGATTAATGTGAATGGGAGGAGACATGCATCA
ACCCAAACAAAAAATGTATTCCAAACTACTCTAATGGTTCTTATGAATGT
GTGTGCGAGCCTATTGGTAAATACGACATTCATTGCATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00026882-exon-sc0000594-1575043694:10722..10836 | TCONS_00026882-exon-sc0000594-1575043694:10722..10836 | Clytia hemisphaerica | exon |
| TCONS_00026882-exon-sc0000594-1575043694:9293..9976 | TCONS_00026882-exon-sc0000594-1575043694:9293..9976 | Clytia hemisphaerica | exon |
| TCONS_00026882-exon-sc0000594-1510915933:10722..10836 | TCONS_00026882-exon-sc0000594-1510915933:10722..10836 | Clytia hemisphaerica | exon |
| TCONS_00026882-exon-sc0000594-1510915933:9293..9976 | TCONS_00026882-exon-sc0000594-1510915933:9293..9976 | Clytia hemisphaerica | exon |
| TCONS_00026882-exon-sc0000594-1491911889:10722..10836 | TCONS_00026882-exon-sc0000594-1491911889:10722..10836 | Clytia hemisphaerica | exon |
| TCONS_00026882-exon-sc0000594-1491911889:9293..9976 | TCONS_00026882-exon-sc0000594-1491911889:9293..9976 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000594 | supercontig | sc0000594:9293..10836 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR008979 | Galactose-bd-like |
Blast
The following BLAST results are available for this feature:
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