TCONS_00026883 (transcript) - C. hemisphaerica

Overview
NameTCONS_00026883
Unique NameTCONS_00026883
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length505

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00026883 ID=TCONS_00026883|Name=TCONS_00026883|organism=Clytia hemisphaerica|type=transcript|length=505bp
CCCCTGTCCCATGTTGGGCCAAAACATAATCATATCTTTTGAAGACTTAT
GTAACGATATACAACAAGATGGCCAAATTCTACGTACTACTGATGGTCAT
GGTCATTTCACTCTCCAAACTCGTTAACAGCAATGCTATACCACTTATAC
CTTACAATACTTCCAAACCGTGCATCATCGACTGCTACAACAAGTGTGTT
CCAAATAACAAATGCTCTTATATACCTGAAGGCTTTGAGTGCAAAATGTA
TAGAAATTCATGTCGACTTGTCTGCGATAAAAGTTTCTGTCCTATCCAAG
GTGGATGTCAAGGATGTAATATGGTTGTAGATGAACTGAGATCAAAATAT
GGAGGTCAAGGGAAAATATTGCCTGCTCCACCTCAAacttgcaaaaataa
aaaagttttgaagaatATCTTGTTTGGAGCATAATTTTATCTACTTATAT
AACCCTGTCTCAGATTGACTTGTTGGAAATATTCTACCTAGTCAGAACAA
TGAAG
Run BLAST on NCBI

protein sequence of TCONS_00026883-protein

>TCONS_00026883-protein ID=TCONS_00026883-protein|Name=TCONS_00026883-protein|organism=Clytia hemisphaerica|type=polypeptide|length=121bp
MAKFYVLLMVMVISLSKLVNSNAIPLIPYNTSKPCIIDCYNKCVPNNKCS
YIPEGFECKMYRNSCRLVCDKSFCPIQGGCQGCNMVVDELRSKYGGQGKI
LPAPPQTCKNKKVLKNILFGA
Run BLAST on NCBI

transcript from alignment at sc0000594:35092..36000-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00026883 ID=TCONS_00026883|Name=TCONS_00026883|organism=Clytia hemisphaerica|type=transcript|length=909bp|location=Sequence derived from alignment at sc0000594:35092..36000- (Clytia hemisphaerica)
CCCCTGTCCCATGTTGGGCCAAAACATAATCATATCTTTTGAAGACTTAT
GTAACGATATACAACAAGATGGCCAAATTCTACGTAAGTATTAAATTCAC
TTGTTAGGTGGTCCAATATCAGCCGGTTTGTGGATCTGGTAAACATGGTT
TGATATTTAAACGGATTTTTTTTACTTTAAGGGCTCTAGTTTTGATTATT
ATTAATTTTGGCAGGTACGAGAAATCCATGAAAAATTAAATTTTTCTGTA
AAGCCTGAAGGCCTAGATGTCGTGCTTTAAGCTTTTCCAAGCAAAAAAAG
TGAATATCGCAATTAAATATTGCTGCTATTGTATTGTTTTCTGTAAACAG
ACCGATATTTACGGTAATTTCAAAGTACAGAGTAGGATAGGGCTTGTGGA
AGAAATAACTAAAATAATTTCTTGTAAATTTGAGCGAAATTGGCTAAATA
TTTTACGTGTCATTTAACTTATGGTCCTCATTTTTAGGTACTACTGATGG
TCATGGTCATTTCACTCTCCAAACTCGTTAACAGCAATGCTATACCACTT
ATACCTTACAATACTTCCAAACCGTGCATCATCGACTGCTACAACAAGTG
TGTTCCAAATAACAAATGCTCTTATATACCTGAAGGCTTTGAGTGCAAAA
TGTATAGAAATTCATGTCGACTTGTCTGCGATAAAAGTTTCTGTCCTATC
CAAGGTGGATGTCAAGGATGTAATATGGTTGTAGATGAACTGAGATCAAA
ATATGGAGGTCAAGGGAAAATATTGCCTGCTCCACCTCAAACTTGCAAAA
ATAAAAAAGTTTTGAAGAATATCTTGTTTGGAGCATAATTTTATCTACTT
ATATAACCCTGTCTCAGATTGACTTGTTGGAAATATTCTACCTAGTCAGA
ACAATGAAG

Coding sequence (CDS) from alignment at sc0000594:35092..36000-

>TCONS_00026883 ID=TCONS_00026883|Name=TCONS_00026883|organism=Clytia hemisphaerica|type=CDS|length=732bp|location=Sequence derived from alignment at sc0000594:35092..36000- (Clytia hemisphaerica)
GTACTACTGATGGTCATGGTCATTTCACTCTCCAAACTCGTTAACAGCAA
TGCTATACCACTTATACCTTACAATACTTCCAAACCGTGCATCATCGACT
GCTACAACAAGTGTGTTCCAAATAACAAATGCTCTTATATACCTGAAGGC
TTTGAGTGCAAAATGTATAGAAATTCATGTCGACTTGTCTGCGATAAAAG
TTTCTGTCCTATCCAAGGTGGATGTCAAGGATGTAATATGGTTGTAGATG
AACTGAGATCAAAATATGGAGGTCAAGGGAAAATATTGCCTGCTCCACCT
CAAACTTGCAAAAATAAAAAAGTTTTGAAGAATATCTTGTTTGGAGCATA
AATGGCCAAATTCTACGTACTACTGATGGTCATGGTCATTTCACTCTCCA
AACTCGTTAACAGCAATGCTATACCACTTATACCTTACAATACTTCCAAA
CCGTGCATCATCGACTGCTACAACAAGTGTGTTCCAAATAACAAATGCTC
TTATATACCTGAAGGCTTTGAGTGCAAAATGTATAGAAATTCATGTCGAC
TTGTCTGCGATAAAAGTTTCTGTCCTATCCAAGGTGGATGTCAAGGATGT
AATATGGTTGTAGATGAACTGAGATCAAAATATGGAGGTCAAGGGAAAAT
ATTGCCTGCTCCACCTCAAACTTGCAAAAATAAAAAAGTTTTGAAGAATA
TCTTGTTTGGAGCATAAATGGCCAAATTCTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015105XLOC_015105Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026883-proteinTCONS_00026883-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026883-exon-sc0000594-1575043694:35918..36000TCONS_00026883-exon-sc0000594-1575043694:35918..36000Clytia hemisphaericaexon
TCONS_00026883-exon-sc0000594-1575043694:35092..35513TCONS_00026883-exon-sc0000594-1575043694:35092..35513Clytia hemisphaericaexon
TCONS_00026883-exon-sc0000594-1510915933:35918..36000TCONS_00026883-exon-sc0000594-1510915933:35918..36000Clytia hemisphaericaexon
TCONS_00026883-exon-sc0000594-1510915933:35092..35513TCONS_00026883-exon-sc0000594-1510915933:35092..35513Clytia hemisphaericaexon
TCONS_00026883-exon-sc0000594-1491911889:35918..36000TCONS_00026883-exon-sc0000594-1491911889:35918..36000Clytia hemisphaericaexon
TCONS_00026883-exon-sc0000594-1491911889:35092..35513TCONS_00026883-exon-sc0000594-1491911889:35092..35513Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000594supercontigsc0000594:35092..36000 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.119857	0.11688	0	0	2.58615	2.42678	1.23276	0.432787	0.404006	0.500426	0	0.159649	0.398566	0.579481	0	0.146075	0	0.184446	3.82233	3.59981	0	0	0	0	0	0	0	0	3.19277	1.89754
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00026883 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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