TCONS_00026897 (transcript) - C. hemisphaerica

Overview
NameTCONS_00026897
Unique NameTCONS_00026897
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2327

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00026897 ID=TCONS_00026897|Name=TCONS_00026897|organism=Clytia hemisphaerica|type=transcript|length=2327bp
AGTTCGGATGTAAACAAACAACtggaaatcatcaaaacaaaatggcgacg
GAGTGAACAATCACAGATCAAAATCAGGAAAAGACCAGCCAGTGATCAGG
TTTTACAGCTCATTCATTGATTGAAAATGTCCTCACTTATCATGCATGGA
AGAAGAGAAGGTCAGGTGAAGAATGGAGGATTAGCATCAGAGTTACCAAG
AATTGGTCTCATGGCTCAAGGAATCAATCCCAATgagGTTGCTGTCTTTC
AACCAAAAGATTGGCAGCGAATACAAAATAATCTTGCACGGTACAATGAA
GCTTCAGAAAAAGCAGAACAAAAGAGACGTGATAGAGAGAATCTTCACGC
AGCGTCAAAAGAGTTGGTTAAACATTGGGAGAATACTATCGAAGGCCAGA
GGTTGAAAAAACTTCAAGCTAGAAAACTCCGCGAAGAACAAGAAGAGgAG
GAACGTAAAAAGATTGATATTGAAGAAGCTAAAATTCAAGCACAAAagcg
taaagaagccattgagAGGGCTAAACAACAACAATATTATGAGACTGATC
GTGTCAAAGGCTTCCATGGTGCACTTTTATTGACTGAAGTTTTAAAGGAA
AGAGATGCACAAATTGCTTTCAAAAATTCCAGACAGGATTttcagaaaga
aagagaaaaccACTTGATCAAATTGCAAAAACAGAATCTTGACGATCTTC
TGAAAGCAGAACAAGAAAAATTACAGGAGACTAGACAAAGATCTACGGAA
GTtgcaaatttccaaaaattacaggtCAAAGATTGTGACAACATCAAACA
ATTGGAAAAAAGTGAGGATAAGGAGGAAGGAAAGACTCTGAAAGATCAAT
TCGATGCTTATTGTAACACCAAGAAAACCATCGCGAATAAACACCGCCAA
AAGAAAAAGGCACTTCaagaattttataaaaatgaaatacaatTAAAAAG
GgaAAAAGAGCAAGAAGATCTTTTGAAAGAAGaagctgaaaatgaaaaaa
tcaaaaaattcgtCAAAGCGAAAAAGaaAATGGCTAACATGCGGAAAGAG
AAAGAACAACAGATTTTCGATAACTTCCAAGAACATACAGAGATGATGCG
CAGTAAACTACAAGACAGCATGCAACAACAAATTGATGACGAAGATGATC
GCATCGCCAAAGCTGTCGCCGAACGCGAACAAAAACGAATGGAAGAATTA
AACCGCAAACAGCAAAAACAAAAGGACTCTTTACAAGCCATGAAAAATCA
TCGCATACAAATGATGACGGATTCTAATCATCAGCAACAAGAGAATAAAG
CAAAAGATCAAATGTTGTTGCAGCAACGTATCAAGCAAGACAATAAGTTT
TTCGAAGACAAGAAAAAGGAGCGTAAAGAGAAACGGCAAGTAGCAAGCAA
ATTACAAAGCACACACAAAGATCAGATGtTCCAGAAAGAAGACAAGAGTG
CGAAGGAAAGAAACGAGCAATTGGAAGTcgataaaaataataaagagCTT
CTAGTAAAGGAagaagaaattttccaaaattacgCTGATAAAGTCATCAC
AAATGCTACCGATAATGGGCGTAACCCATTTCCTTTAATTAAAGCCGCCC
GAGAAGGTCCTGGTGGAGGACGTGGACCTAAATTTGAAGGTAATGCAGGT
TTGAGGCCGAGTTATATAGTTGCTGACGCTACTGGGGTCCAATTACCGCA
TTATTTGAAAGACGAAAGTGTCGGAAATCGCGTTTACGGACATGTCTGTA
AATCAGGAACCAGACTTGGATTCACATGGTAATTTGTACATGgtacattt
ttctttcaattaattttttttatttccaaattttaatttctgatatattt
ttatattataaaatCCTTGGAAATGATTAATTTATAATGATGCCgtactg
tatatatttttaatgaTTAGATATAATAGAATTTGAACATAATGAACATA
ATTGTCCTGTTAATTCGTAGAATGCTGGAAGCATAGGGAATATTCTACAG
ATAATTGACTACTTGTTGACTATAGGTTGCTGACCCTTTCACGTCCCAGA
GCTTTACACTTTTTGAAGACAAATTCAAGAGTTTTGCACGAAttttttat
caagttttttATCTAATTTCCACACACGGAGAATACTTTTCCTTGCAAGG
AGTGTGAGTTATCAAATACCGCAGAGAGTAATATGATATTTATAACTGAG
GTGAATCTTGGACTTGCATGACAGTAAAAGAAGTTTCGGTGTCTTCCATG
TGCGTTGTGGTTGTTGTAAACTCTCCTTCGTAAATTTCATCGTCTTCCTC
TAAAGTCATGCTTTCATTCGTTCTTCC
Run BLAST on NCBI

transcript from alignment at sc0000596:4949..21070+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00026897 ID=TCONS_00026897|Name=TCONS_00026897|organism=Clytia hemisphaerica|type=transcript|length=16122bp|location=Sequence derived from alignment at sc0000596:4949..21070+ (Clytia hemisphaerica)
AGTTCGGATGTAAACAAACAACtggaaatcatcaaaacaaaatggcgacg
GAGTGAACAATCACAGATCAAAATCAGGAAAAGACCAGCCAGTGATCAGG
TTTTACAGCTCATTCATTGATTGAAAATGTCCTCACTTATCATGCATGGA
AGAAGAGAAGGTCAGGTGAAGAATGGAGGTACCAATTTTTGCCATATTTC
ACTTTCTGATTCGAAATGCAAGCAAAATCTTTGTGTTCTTTACTTTTTTA
TGGCGCGCCGAATTACTTTttattatcaacttttttttcgacaccaactt
ttgttttttgacaTCAGTTTTATTTTCTGATACCAACTTTTCGTTTTTTG
CGACCAACTTCATGTTTTTTCATACAGTCATCTTTTTTTCTCCgacacca
attttttttttcggcaccaattttttttccaatagacctttttttaaaga
ggtaaaccctgttgaataattatgtagtccagcataaaaacaatgataca
gccatgcataattactgtttcatgcatattataataattaagcatggcta
tatcattgttttttttgctggactacataattattcaacagggtggcctc
attattaaaaaaaggtctataccaACTTCTTTTCAAGACCCGGTTACGAA
ACTTCTTTTTTACGAAGTCAACCTTTTTGGTTATTGTCTCGTCCACCCAA
CCTGATTAATATAATGTGTGTCTGGGGCTTTAACGAAATGCCCACCATGA
AACTTTTCCAAAcgggattgaaaaaataaaaagctgAAACACCAGCATGA
ATACTGACTAGGACGAAGTCTGGAAGTTTGTTTCGGTTGAACTTGAAGTC
ATTCCTANATGCATGGAAGAAGAGAAGGTCAGGTGAAGAATGGAGGTACC
AATTTTTGCCATATTTCACTTTCTGATTCGAAAtgcaagcaaaatctttt
tagTGTTCTTTACTTACTTTATGGCGCGCCGAATTACTTTttattatcaa
cttttttttcgacaccaacttttgttttttgacatcagttttattttctg
atacaaacttttcgttttttgcgaccaatttcatgttttttcatTTACAG
TCATCTTTTTTTCTCgacaccaattttttttttcgacaccaatttttttt
ccgatacCAACTTCTTTTCAAGACCCGGTTACGAAACTTCTTTTTTACGA
AGTCAACCTTTTTGGTTATTGTCTCGTCCACCCAACCTGATTAATATAAT
TTGTGTCTGGGGCTTTAACGAAATGCCCACCATGAAACTTTTCCAAAcgg
aattgaaaaaataaaaagctgAAACACCAGCATGAATACTGACTAGGACG
AAGTCTGGAAGTTTGTTTCGGTTGAACTTGAAGTCATTCCTATAGTTTGT
ACTTGTATATACTTTGTGTTTTACTTCAAATTTGGTTTGTGaactttcag
ttttttttctgttgttttttcctatcgctagatttcactaaatgtagtcc
tccaaaacaaaagaatcactagatacaatccgtcgtcatgattggagtgc
gttctatgcgcgtttggGAAAATAAGTAGcagggaaataagtagcttcaa
tttctcttgcctgagaagggttaaagattcgcctctagcccttcgggctt
gaaactcaatggtcatcACGCCCAATCGTGCCGCCTTTTTAGAGCAGAAT
AGATTATTGGCAATGATGTAGTAAAGCCCGAAGCAGCCGAAGGGCTAGCT
AGATGTTGaataagtcacgtgacattctAATAGAATTTCAgagcttgacc
aatcagaagatTTTCGGAAAGATtagcagaaatattttttccgatgttca
ctttttttgcttggaagagcttaaagcactccatctagcccttcgggctt
tacagaaatctggtATCGCGTTGTGTACCGtaaaaagcacaggtcgaaat
cttATGTCGACGCTGTGctgacgaatcgagattctattcagcgcgcaatc
aacgcagacaaaagtaaccatgacgaccatccaagatcttggatgaagtt
caaagttgatatttttattcccatttagtaattactgttatacatttggg
gatcacgtactgtaaaagatttcttttgaaagaaactcacttcaattaaA
CTTTCTGGGGAATTCTAATATCTTtaaggtttctggggaattcgtaaata
gtaaactgcatactgatacagtctgctagatatttttaataaggtaatat
ttgctcttcatctttgatacgttctacagtgattagattgacacatacAC
GATATAATTCCTATTAtcggtcttcagaggttaatatattctttgaaaac
ttaacctctgatactcagggtacgtTAGAAGGTAATCGAGACAAGAGTta
gtatcggaaaataaaagTTGGTAGTAAGGGAAAAAAATGGTATCGGAAAA
AAAAGTTagtgtcgaaaaaaaaaagttggtgtcgaaaaaaaaaagttggt
gttgaaaaaaaaaagttggtgtcgaaaaaaaaagttggtgtcgaaaaaaa
agttggtaataAAATAGTTCTTTTCTAAAGCTGGGCACAGCACATAGATA
GGAAAAGACAGGCTGATTTAATTCATAAATTGAAAACATATAGTACTGCC
ATAAATATGtttcatattttttcttttaatcagTACACAATCTTTAATTt
gtaaggggtcactcacataaaTTTTTGGTTAGAAAAATGTCAATTGacga
agcgatcaaaaaaaaagtttattacagtatttattttcaccagaatatta
ataaaagttcattctgggctgtttgttttggttttcaaaacagaCGAAGC
AAGTGGGTGGATGGGTTAAAAGTTGTTGGCGTTTTTTTCAAATCTAGCTA
CAGGTATATGTACCACAAAACCCACAGGTACCTCAAAACCAACAATTTCA
GTTCTAGAGttctagaaaaatctaaaatgtttttattagcaTAACTTTTT
AAGATTATGTTGGTATAATAgtttctttattatttaaaacaaaattgagc
ATTATTGGttgggtaaaagtttttttatcaagatttaTCGCTAGAAATct
aacttcaaaatttttgatttttttcaaaaaatggtcagataAGTCACTTG
CTATTGACTAACCTATcaatctttcgttttctaataCCTCTAGGGATAAC
ACAAATGTAGGAAAAAAGTCCTAAGTGCTGTAAGCAATGTGTTTATTTTA
ATTGCTctcaaaaaactcatttttaaattgtgggttttgaggtacaaatg
agaaaaattgcaagttttagaatttttcgaTGTCaaactcaaaaatattt
atctatttctCAAACATACTTCTGGAATACATACAATTTTGTGacacatt
ttcaagaaaaattatgcaaaaatacaACAATAATGTTAAGCATAACTCAA
AAGCTTAACAAAAAGTATGgatatattacattatatttacTAAAGCTAGT
CGGTTTATTCCTGATACTTTGttaaacatattttcaattGAATCATGGTC
TGGgatgttcatttttttcctcaAATGGGAATGACCTTTAATGGCCCATC
TATGATGTCATGAACTGGGAAAATGCTTATATCTGGAAGATGGTCTGGGG
TGTCTTCAAGAACAGTGCCACTCCCAACTTTAGGCTTTAGACAGTGCAAC
TGAATTGAGTCAACAGCGCCATCTTcatcttttaaaaatcttttcaacaa
aCGACCAATATacaacctttttgttttcttggtgGTGTAGATGGCAGCAT
ACCATCTAGATGGCAGCATACCATCTACCAGTGACTTCAGTCTCTTTTGT
TGGCTATGCCAGGACTTTCCAGCAATTCTTCAGTTTTTGGGTGTCGTTTT
CATCATCAGTTTCATCTTCGGAAATTTCGCTTTCTTCAGATTCAAATTCC
TCACCTTCCTCATCTGATGACGAATCCTCCTCAAACAATTGTTTAGAGTT
TGAATGCTGTTTGGCTGGTAATATTATCAGTGGTTTGATTCCATTAACTT
ACTTTAGCTTTGCTGCAAACTGAAGGATAATGCAATAGTGCAATACTGGG
CACTGCTTTAATCCTAAAGCCAAAGATTTTTGTTGCAAACAGGTACATTG
AGTTTTGCATTTGATGAATGTTTCTCTGATCTACTCTCTCTTCTttgctt
cttctttttcagtttccTTCTTCAGTTTCTCATCCCTGATTTctttgacc
ttggttgctacaTCTTTAGCCCTCCTCAAGCCGTGTACCTGAGTCACCCT
TGTAGTTGCGGTTGCTTTCTTTTCTCCGTGTGGCTTAACCCTTTTTATTG
TCAGAAGCCCAGGAATTGCTTCTTTCTGCCATCTCCCTTATCAGGGACTG
AGCCTGGCCAGATTTAGCCTTCCAATAATCATGAgaaccttttcttttgt
caGAAGGAGACATGATGAGTCTGGAGTTGATGTACTGTAGATGTTGATGG
AGGGATTTCTTCTTGTATACATGCTACTGCTCTGTCAAGCTTATCTTACT
GCATGAAGTTTACGCTCAATCCACTTGATGTTATTCCAACCCGCTTGGCA
CATGAAACTAATGTATCTTTATCTGCCCATATTTAGGCCAAATCTCTCCC
AAGATAGTCATAAAAGCCTCACGatttttgttttgcatcggATTAAAATG
GGATTCTTTAGTTTTTCGATATTCATAGTGGAGATTGCACTGTAATTTCA
ACAACTTCATATGCTTTGCAAAAGTCTTCTTTTCATAGTAAATAATGGTT
TCATTTGCTTCAATTAATGCCTAAATCAGTTTGATTTGCTACCCAGACAa
tgtaaaaaagtttctatcatTTGCAATAAATAACTATGTACGGTGATGTT
TTGTAACTTTCTTGAGTGATAACAACAGTCTATGCAGTTTCCAAAATCAT
TTCAACACAATTAGGAAAACATGTAATCCttaatttttacatacaaaATA
CCTATATGAAATACAANTGGGACTCCTCGCACCATCAAACAAGTTTCTTG
ATAAAGGCAgcccaaaaaataattatttagatCAGAAATTTAGTGTGGGT
TTTGTGGTACATATACCTGTAGAAACATTGATATTTTTTACTCGCCATGT
TTCAGTTTGATCGCTTCGtctgttttgaaaaccaaaacaaatggCCCGGA
ATGAACTTTTATTGATATTTCTGGTGAAAATGAATACTGTAATAAATCAC
CACAAACATCATCAATTGTGTCAACTGgacaaacttaaaaaaattagcaa
aaatagAGTCAACAAGTCAGTAAACTTTATGCTATATATGTATTTTATAA
TTTAGGATTAGCATCAGAGTTACCAAGAATTGGTCTCATGGCTCAAGGAA
TCAATCCCAATgaggtaggtaaacatccaaaGGTTTATATATCTCACTAT
AAATAGAAGAATTGAAAAACTCTTTAATATAAAATGCTATGGAGATCACT
TTCCTAGTTTCAGGTAGTGTGGTTTCTGTGTCAacattcaacaaaataaa
acagaatttgtctaaaattaaaaaatatatactttttaatgaaaattgta
TGCACTTGAAATTCTTATTTAGGTTGCTGTCTTTCAACCAAAAGATTGGC
AGCGAATACAAAATAATCTTGCACGGTACAATGAAGCTTCAGAAAAAGCA
GAACAAAAGAGACGTGATAGAGAGAATCTTCACGCAGCGTCAAAAGAGTT
GGTTAAACATTGGGAGAATACTATCGAAGGCCAGAGGTTGAAAAAACTTC
AAGCTAGAAAACTCCGCGAAGAACAAGAAGAGGTACCATACCAAATTTGC
TCTTTCAAGCGTACTCAATTTATTCTGTGTCTTTGTCACTTTGTTAgtct
tactttttctttttgctttataCTCTTCACTCTTTATATTAACTGAACTC
TGTATTAGTGAACAATTGATTAATTGAACCCCTTAGCGTTTGAGTTTTGT
GAAACTTTTGTATAGAAAGTGAATTATGATAGCTTTGGTTGGCTTTAGTT
CAAGATTCTTAAACATTCTCAAGTTAGCTATGTATCCCATCAAATACTCT
AAAAcgttttctttaattttgattacTCAATTTTCCAGGCATATACTGTa
acctttttttgtaaaattatcattttcaggAGGAACGTAAAAAGATTGAT
ATTGAAGAAGCTAAAATTCAAGCACAAAagcgtaaagaagccattgagAG
GGCTAAACAACAACAATATTATGAGACTGATCGTGTCAAAGGCTTCCATG
TGAGTAGTTTTAAAGTCcctacttaaaaaaaaatccattgATCCTAAGTC
ACAGCTGATGGTAGACAACTTTCACTAGAGGCCATTCTATTCAACGATAC
AATTAGTAAATGTCCTAGGACCTCAAAATGTAATACTTTGTAATGGTATG
TATGCGTTATTCAACTTTAATGAATATCTTTCTTCTCATAGGGTGCACTT
TTATTGACTGAAGTTTTAAAGGAAAGAGATGCACAAATTGCTTTCAAAAA
TTCCAGACAGGATTttcagaaagaaagagaaaaccACTTGATCAAATTGC
AAAAACAGGTACCTATTTAGAGTTATGTTCAATAATTTGGTGCAAATCTA
GAGGACCCAATTTCTAAAAGAATAATacacaatttttcatatttcgtttt
tggacctaccccggtggggtggaggtcctataaattcacctctgtccgtc
cgtccgtccgttcgttaccagcttttcccaagattgaatcataggaatca
tttggtttttggtacaaaggtgcaaaatggtagtggccaaaatgtgacgg
agacctattttcgaaaaaaaaatatgaaaagaatatttcaagatcatgaa
attttggtttctaaacgttttttttataagaaacaaacgactaattttaa
taaatcgtcactatttgtgttctgaatgatNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtttgtgttctg
aatgattgtttaacgttcatgctcacgtagatatcaattatatatgtgtt
aaatgcataaccaggtaggtccataaaagtatcacttgtttgtaTTGAAA
TTTCATCTCATATCATCAATATCTtagatttgattttcaaatacGCCACC
AAAATGACTTTTTACATATTTAACGTTTCTTTATCAGAATCTTGACGATC
TTCTGAAAGCAGAACAAGAAAAATTACAGGAGACTAGACAAAGATCTACG
GAAGTtgcaaatttccaaaaattacagtaagctatttttttctcaatttt
gagtGGATTCATTGAATAATCTTTGAATAAATGTATATATCATTTGAATT
TCATTCTATAATCTGTAAGCTTTTTTGATAAAGGTTACTtttaaatttca
tgatttcaagatttttttttttaggttaaaCCAATCCATTTATTTGATCA
CTTTGAAAAGCTTAAGTAGAACTTTTAATCAATATTCAAGTTTTACTTTA
CAACTGATCGATGtgtcttttttttatataagggtCAAAGATTGTGACAA
CATCAAACAATTGGAAAAAAGTGAGGATAAGGAGGAAGGAAAGACTCTGA
AAGATCAATTCGATGCTTATTGTAACACCAAGAAAACCATCGCGAATAAA
CACCGCCAAAAGAAAAAGGCACTTCaagaattttataaaaatgaaataca
atTAAAAAGGGTAAGATCGTTTTTTGTTTGTGAAAACATGTAATATCTGT
TCGTGATACTTTTCCATTACTATCATACTTGTCTTTTCAATGATTTTATC
CAGGGGTACTAGGTGGTTTGCGAGATGATGGTTAAATATCCGagtcaaat
ttcgaaaatcgaccctcagagagaaaattttgtccatttttgacgttttt
gctacCCTTAGAGTAATTTTAGACcaaatttcaataatttatgACCCCTA
TTTTTGAATTTGGTAATTTTGGAatccttacagagactcaattgctGTTT
AAATGGTTTCTGTATCCTTTTGAATGACTTTCGGAAGTGTGAAAAAAGAA
CCCTTATGacgcacccattttgcctaagtaacccccACCCGGATTTTAAT
CCTATGGGATCCTTTTCAATGTTTTAGTAGCAATTTTATAATTGGTCAAT
AACCCGTCAATGGAAGAGGAAATATTGTCGGAGAAATTAATGACAcctca
atttttctttcaggaAAAAGAGCAAGAAGATCTTTTGAAAGAAGaagctg
aaaatgaaaaaatcaaaaaattcgtCAAAGCGAAAAAGGTAAGAAATAAC
TCTATCTACTCCCTACACATAATGATAGAGTCGATTTCAtgctttttaaa
tgaaaaaagtaGGCACGCCTCgtatgctgaaaaaccccaatCAAAGAAAG
AATTCCTCAAAAAAGGTTAGCAGACATTGTATAGCCTTTCATTAACCCTT
TTaaaagtgccaatgtcgtatttatcagacatgggctatgtaggatgggg
aagccctcctgtaatgcccagtttgagttagaaatcgtcatttttggtct
aactcgtacgaatcggattgggcttcatagccaagcaaaaaaaaaaaatc
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNgcaaaaaaaaaaatcaaaagtgagt
cttttcagcgagattttaagctaaaaagtcaaagaaatgcaaaaatttga
caaaaatcaacttttttaagattttgacagttttttgataatttctgGTT
TCTGAACGAGttatccaagaacctccaaatttggactctaagctatccaa
cagactataaacgagcttctaactccttctagatccggagatataagctt
TAAAGTtcgaactagcgattttctttaaaaaactaagaaaaaatgaccgt
ggcacttaaagggttaacgcCCTCATTAGATAATTGTGATTTATTAACTA
GAAGTAATATTCAACGGCGTGAAtatgttttatttactttttagaaAATG
GCTAACATGCGGAAAGAGAAAGAACAACAGATTTTCGAGTAAGTTTCCAT
TTCTTCCAATTCTTGATAACATTTGATCTTGATTGTTTGTCCGTttagaa
gaaaagaagaagaacgCTGAGATCTCCTGAACTCATTTAGGGTGTTTTTG
CTGAATTTTAATCTTATTGTCTTCTTTCTCCATTCTTCACAGTAACTTCC
AAGAACATACAGAGATGATGCGCAGTAAACTACAAGACAGCATGCAACAA
CAAATTGATGACGAAGATGATCGCATCGCCAAAGCTGTCGCCGAACGCGA
ACAAAAACGAATGGTGAGGAATTTTCATCGAATGTCTCTTTTCCGAGTCC
ATCTATGACAGATCTTCCATTCATGATGTATACgaggaaaaatatatttg
aaaaattttgaatattaatTTGTTCATTCTTTTGATCTTTCCATGTAACA
GGAAGAATTAAACCGCAAACAGCAAAAACAAAAGGACTCTTTACAAGCCA
TGAAAAATCATCGCATACAAATGGTAAGAGCTCTTATTCATCTTACTTCT
CTATTAAACAAAGTCAAGCCCATCTTGAAAGACGATGTGAAGTCTTTGTT
GATTTTTGCGTTTTCAACCATTGAGTCGAAAGCCCCAAAGGGACTAAGGA
TTAAACTCTTGCAtcggaaatgaagccacttagtTCCCCTCTTAAACGAG
TGACACGCGTTGTTTTCACAAGAAGGGCTGGATTGCAAGTAAAATATATC
GCCAGATCTCGAAAAACGTGTCGTGTGAAGAATAGAaaatcgctagattc
aatctgtcattctaaatgcggcgcaaatcttaaaaggtttcactttttct
tgctcgAGAAAGCTCAAAGATTCCTTTCTAGCACTTCAGGCtttaatgtt
tttgataattgcATTATTTTATTGAAGCTAATGGCCAGATCAGATGGTTC
CAgtgatttcattgttttttttattgccAGATGACGGATTCTAATCATCA
GCAACAAGAGAATAAAGCAAAAGATCAAATGTTGTTGCAGCAACGTATCA
AGCAAGACAATAAGGTAAAAAAGTTTACATCCAAAAAGAACGAATGTAGT
TTAAACTCCNCTCCTGAACTCATTTAGGGTGTTTTTGCTGAATTTTAATC
TTATTGTCTTCTTTCTCCATTCTTCACAGTAACTTCCAAGAACATACAGA
GATGATGCGCAGTAAACTACAAGACAGCATGCAACAACAAATTGATGACG
AAGATGATCGCATCGCCAAAGCTGTCGCCGAACGCGAACAAAAACGAATG
GTGAGGAATTTTCATCGAATGTCTCTTTTCCGAGTCCATCTATGACAGAT
CTTCCATTCATGATGTATACgaggaaaaatatatttgaaaaattttgaat
attaatTTGTTCATTCTTTTGATCTTTCCATGTAACAGGAAGAATTAAAC
CGCAAACAGCAAAAACAAAAGGACTCTTTACAAGCCATGAAAAATCATCG
CATACAAATGGTAAGAGCTCTTATTCATCTTACTTCTCTATTAAACAAAG
TCAAGCCCATCTTGAAAGACGATGTGAAGTCTTTGTTGATTTTTGCGTTT
TCAACCATTGAGTCGAAAGCCCCAAAGGGACTAAGGATTAAACTCTTGCA
tcggaaatgaagccacttagtTCCCCTCTTAAACGAGTGACACGCGTTGT
TTTCACAAGAAGGGCTGGATTGCAAGTAAAATATATCGCCAGATCTCGAA
AAACGTGTCGTGTGAAGAATAGAaaatcgctagattcaatctgtcattct
aaatgcggcgcaaatcttaaaaggtttcactttttcttgctcgAGAAAGC
TCAAAGATTTCTTTCTAGCACTTCAGGCtttaatgtttttgataattgcA
TTATTTTATTGAAGCTAATGGCCAGATCAGATGGTTCCAGtgatttaatt
gttttttttattgccAGATGACGGATTCTAATCATCAGCAACAAGAGAAT
AAAGCAAAAGATCAAATGTTGTTGCAGCAACGTATCAAGCAAGACAATAA
GGTAAAAAAGTTTACATCCAAAAAGAACGAATGTAGTTTAAACTCCTTAG
CTGCTAAATCCTCAATCTAAACTTTCAAAGACACGATTTTTTGTGACTGT
AcgaaaattcatgatatgcaccatatAATATCAATATCTTTCACATAATC
ACCAACTGATTGGTtacaagtgacgtattgactgattttactgGATTTTA
TGTCACTTACAAACCAATCAGATATTGGGAATGTAATTTCAGAAGACATA
GCAATGGCGCATATGAAATATACCACTGGAAAGTCTTctaagaattttta
aaattttccacccaataatacgtcactttttctattctttaagtgacgta
ttgggtgaaaattctcggaagactctccagtggtgcatatcatgaatagc
ttaATTCTTCACGATGATTTGAAACTCAGTATCACGTCAATCAACTACGT
TTAACATCTTTTTCCCCTTTCAGTTTTTCGAAGACAAGAAAAAGGAGCGT
AAAGAGAAACGGCAAGTAGCAAGCAAATTACAAAGCACACACAAAGATCA
GATGGTACGTAACCattattttcttgaaatgaGCTTAGTAAcgctcaaat
tgcagatgtagaacgataaactcggtcTACAATCACTCACCATCTGGATA
ATGATATCACTTTatctcactaacattctgccgattggtagtgtgaaggt
ttcgatcacagactttcaccgcaatggactgtgtttGAATCCCAAGCTCT
TCCAGAGAGGATGTTAGGGAAATATGTTGATAGACTCTCCACCTTCACTC
ACATTATTTTCTTGGTTTCGGAACCTGTTTTCTTACTAACAAAAGTACGT
ATCACGTTTTATGGGGTAGTTACACCCTTTGCAGTTGAGCTAGTCTTGGT
TGGGCGTGCGTGAGAGGTGCGTTCCCTGAGAATGGCCTGAGAAATGTCAA
ATAGCGACAACAGGTGACAGAGATagttagcttctgatttgtctagatcc
tgattgactgaAGAGCAGTTACTTCACCGtccaggggggggtcaagcctC
AGGGTACTAAAGCATAGCCTAGAGAGGGTACTTatctaaaaaaaactttg
actcATACCACCCACCCAaataagtacccgggtacttaatGACTTTTCCC
TTCTAGACCCTATACCAACCcaaaaagtacccgggtacttaaggACTTTT
CTCTTCTAGACCCCATacctctttgtttttatttcaaaatgttcgAACAC
TTTgttttgttatgattcgaaAGTACTTAGTGCTCTGTTTACATTGAGAG
ATCAACCTTGTTCTCAAGTGATacattgtttcttttttcttaactAGCTA
CTCGGCAATCATAATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGGCAATCATAATGAAT
GAGGACTTAGGTATTCATCAAAATGTTGTACAGTTACAGTATACAAAAGG
CAAAATATTATTTCCCAAGTAAAACGCAGGAAAAGCTTCTTCAGGAGCTT
TGCTTTCTTATGGGCTTCTGattcacaagcttctgataaaAGATTCGAAC
GTCTAGGaaacttttcgaatgtttttgaagtagaaaagaaaaaatgtaag
agagagagagaaaatatATCAGTGAAAATAAACACTCAGAAGGAGTTCAT
TACATCACTATATCACGTGAAAACATAATAGAATAGAAGGAAAGGGAAAC
ACTCAGATGGAGctcgatcaaaacaaacaaaacaggaccttggctttcac
tttcacttcaaaacttttccctaaatttctttttcttggcaGGTCTTGTT
ATGTTTTGATATTACATCAACAATATAAagcaatttaaaactttcttttc
atCGATAATATTTTTATATGGCAGAATCATGTTTCTTTCTGTTCTTCGtg
tcaaattttatatttttaaccaTCCAAtgatggaataaaaatgtcacaGG
TTTTTAACAATACTTAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNCCCCCCCCCCTgcaccgtcctcaaaagtgcaaatacatgaA
CTCGATATTGTTCTGTCTTCGTGCACGCAAGGGGGAAATAAATTTCTTAC
acttttatttcgattttttttagtTCCAGAAAGAAGACAAGAGTGCGAAG
GAAAGAAACGAGCAATTGGAAGTcgataaaaataataaagagCTTCTAGT
AAAGGAagaagaaattttccaaaattacgCTGATAAAGTCATCACAAATG
CTACCGATAATGGGCGTAACCCATTTCCTTTAATTAAAGCCGCCCGAGAA
GGTCCTGGTGGAGGACGTGGACCTAAATTTGAAGGTAATGCAGGTTTGAG
GCCGAGTTATATAGTTGCTGACGCTACTGGGGTCCAATTACCGCATTATT
TGAAAGACGAAAGTGTCGGAAATCGCGTTTACGGACATGTCTGTAAATCA
GGAACCAGACTTGGATTCACATGGTAATTTGTACATGgtacatttttctt
tcaattaattttttttatttccaaattttaatttctgatatatttttata
ttataaaatCCTTGGAAATGATTAATTTATAATGATGCCgtactgtatat
atttttaatgaTTAGATATAATAGAATTTGAACATAATGAACATAATTGT
CCTGTTAATTCGTAGAATGCTGGAAGCATAGGGAATATTCTACAGATAAT
TGACTACTTGTTGACTATAGGTTGCTGACCCTTTCACGTCCCAGAGCTTT
ACACTTTTTGAAGACAAATTCAAGAGTTTTGCACGAAttttttatcaagt
tttttATCTAATTTCCACACACGGAGAATACTTTTCCTTGCAAGGAGTGT
GAGTTATCAAATACCGCAGAGAGTAATATGATATTTATAACTGAGGTGAA
TCTTGGACTTGCATGACAGTAAAAGAAGTTTCGGTGTCTTCCATGTGCGT
TGTGGTTGTTGTAAACTCTCCTTCGTAAATTTCATCGTCTTCCTCTAAAG
TCATGCTTTCATTCGTTCTTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015112XLOC_015112Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026897-exon-sc0000596-1491911889:4949..5126TCONS_00026897-exon-sc0000596-1491911889:4949..5126Clytia hemisphaericaexon
TCONS_00026897-exon-sc0000596-1510915933:4949..5126TCONS_00026897-exon-sc0000596-1510915933:4949..5126Clytia hemisphaericaexon
TCONS_00026897-exon-sc0000596-1575043694:4949..5126TCONS_00026897-exon-sc0000596-1575043694:4949..5126Clytia hemisphaericaexon
TCONS_00026897-exon-sc0000596-1491911889:10304..10362TCONS_00026897-exon-sc0000596-1491911889:10304..10362Clytia hemisphaericaexon
TCONS_00026897-exon-sc0000596-1510915933:10304..10362TCONS_00026897-exon-sc0000596-1510915933:10304..10362Clytia hemisphaericaexon
TCONS_00026897-exon-sc0000596-1575043694:10304..10362TCONS_00026897-exon-sc0000596-1575043694:10304..10362Clytia hemisphaericaexon
TCONS_00026897-exon-sc0000596-1491911889:10571..10780TCONS_00026897-exon-sc0000596-1491911889:10571..10780Clytia hemisphaericaexon
TCONS_00026897-exon-sc0000596-1510915933:10571..10780TCONS_00026897-exon-sc0000596-1510915933:10571..10780Clytia hemisphaericaexon
TCONS_00026897-exon-sc0000596-1575043694:10571..10780TCONS_00026897-exon-sc0000596-1575043694:10571..10780Clytia hemisphaericaexon
TCONS_00026897-exon-sc0000596-1491911889:11128..11247TCONS_00026897-exon-sc0000596-1491911889:11128..11247Clytia hemisphaericaexon
TCONS_00026897-exon-sc0000596-1510915933:11128..11247TCONS_00026897-exon-sc0000596-1510915933:11128..11247Clytia hemisphaericaexon
TCONS_00026897-exon-sc0000596-1575043694:11128..11247TCONS_00026897-exon-sc0000596-1575043694:11128..11247Clytia hemisphaericaexon
TCONS_00026897-exon-sc0000596-1491911889:11440..11556TCONS_00026897-exon-sc0000596-1491911889:11440..11556Clytia hemisphaericaexon
TCONS_00026897-exon-sc0000596-1510915933:11440..11556TCONS_00026897-exon-sc0000596-1510915933:11440..11556Clytia hemisphaericaexon
TCONS_00026897-exon-sc0000596-1575043694:11440..11556TCONS_00026897-exon-sc0000596-1575043694:11440..11556Clytia hemisphaericaexon
TCONS_00026897-exon-sc0000596-1491911889:12986..13074TCONS_00026897-exon-sc0000596-1491911889:12986..13074Clytia hemisphaericaexon
TCONS_00026897-exon-sc0000596-1510915933:12986..13074TCONS_00026897-exon-sc0000596-1510915933:12986..13074Clytia hemisphaericaexon
TCONS_00026897-exon-sc0000596-1575043694:12986..13074TCONS_00026897-exon-sc0000596-1575043694:12986..13074Clytia hemisphaericaexon
TCONS_00026897-exon-sc0000596-1491911889:13331..13508TCONS_00026897-exon-sc0000596-1491911889:13331..13508Clytia hemisphaericaexon
TCONS_00026897-exon-sc0000596-1510915933:13331..13508TCONS_00026897-exon-sc0000596-1510915933:13331..13508Clytia hemisphaericaexon
TCONS_00026897-exon-sc0000596-1575043694:13331..13508TCONS_00026897-exon-sc0000596-1575043694:13331..13508Clytia hemisphaericaexon
TCONS_00026897-exon-sc0000596-1491911889:14012..14086TCONS_00026897-exon-sc0000596-1491911889:14012..14086Clytia hemisphaericaexon
TCONS_00026897-exon-sc0000596-1510915933:14012..14086TCONS_00026897-exon-sc0000596-1510915933:14012..14086Clytia hemisphaericaexon
TCONS_00026897-exon-sc0000596-1575043694:14012..14086TCONS_00026897-exon-sc0000596-1575043694:14012..14086Clytia hemisphaericaexon
TCONS_00026897-exon-sc0000596-1491911889:14843..14886TCONS_00026897-exon-sc0000596-1491911889:14843..14886Clytia hemisphaericaexon
TCONS_00026897-exon-sc0000596-1510915933:14843..14886TCONS_00026897-exon-sc0000596-1510915933:14843..14886Clytia hemisphaericaexon
TCONS_00026897-exon-sc0000596-1575043694:14843..14886TCONS_00026897-exon-sc0000596-1575043694:14843..14886Clytia hemisphaericaexon
TCONS_00026897-exon-sc0000596-1491911889:15041..15161TCONS_00026897-exon-sc0000596-1491911889:15041..15161Clytia hemisphaericaexon
TCONS_00026897-exon-sc0000596-1510915933:15041..15161TCONS_00026897-exon-sc0000596-1510915933:15041..15161Clytia hemisphaericaexon
TCONS_00026897-exon-sc0000596-1575043694:15041..15161TCONS_00026897-exon-sc0000596-1575043694:15041..15161Clytia hemisphaericaexon
TCONS_00026897-exon-sc0000596-1491911889:15300..15371TCONS_00026897-exon-sc0000596-1491911889:15300..15371Clytia hemisphaericaexon
TCONS_00026897-exon-sc0000596-1510915933:15300..15371TCONS_00026897-exon-sc0000596-1510915933:15300..15371Clytia hemisphaericaexon
TCONS_00026897-exon-sc0000596-1575043694:15300..15371TCONS_00026897-exon-sc0000596-1575043694:15300..15371Clytia hemisphaericaexon
TCONS_00026897-exon-sc0000596-1491911889:15829..15912TCONS_00026897-exon-sc0000596-1491911889:15829..15912Clytia hemisphaericaexon
TCONS_00026897-exon-sc0000596-1510915933:15829..15912TCONS_00026897-exon-sc0000596-1510915933:15829..15912Clytia hemisphaericaexon
TCONS_00026897-exon-sc0000596-1575043694:15829..15912TCONS_00026897-exon-sc0000596-1575043694:15829..15912Clytia hemisphaericaexon
TCONS_00026897-exon-sc0000596-1491911889:17372..17452TCONS_00026897-exon-sc0000596-1491911889:17372..17452Clytia hemisphaericaexon
TCONS_00026897-exon-sc0000596-1510915933:17372..17452TCONS_00026897-exon-sc0000596-1510915933:17372..17452Clytia hemisphaericaexon
TCONS_00026897-exon-sc0000596-1575043694:17372..17452TCONS_00026897-exon-sc0000596-1575043694:17372..17452Clytia hemisphaericaexon
TCONS_00026897-exon-sc0000596-1491911889:20172..21070TCONS_00026897-exon-sc0000596-1491911889:20172..21070Clytia hemisphaericaexon
TCONS_00026897-exon-sc0000596-1510915933:20172..21070TCONS_00026897-exon-sc0000596-1510915933:20172..21070Clytia hemisphaericaexon
TCONS_00026897-exon-sc0000596-1575043694:20172..21070TCONS_00026897-exon-sc0000596-1575043694:20172..21070Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000596supercontigsc0000596:4949..21070 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.49469	1.92348	0.724467	0.912669	29.4879	15.6064	7.61961	12.7646	5.19947	6.17543	5.12397	4.85792	1.48986	0.0631863	0.23329	0.967671	0.531474	1.38752	1.57502	1.28888	4.28193	0.775102	0.647913	0.388213	23.5676	14.6163	4.29795	3.84855	1.38395	0.349778
Blast
[Close]
BLAST of TCONS_00026897 vs. Swiss-Prot (Human)
Match: CC173 (Coiled-coil domain-containing protein 173 OS=Homo sapiens GN=CCDC173 PE=2 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 5.751e-21
Identity = 67/171 (39.18%), Postives = 107/171 (62.57%), Query Frame = 1 
Query:  136 LIMHGRREGQVKNG-----GLASELPRIGLMAQGINPNEVAVFQPKDWQRIQNNLARYNEASEKAEQKRRDRENLHAASKELVKHWENTIEGQRLKKXXXXXXXXXXXXXXXXXXXXXXXXXQAQKRKEAIERAKQQQYYETDRVKGFHGALLLTEVLKERDAQIAFKNSR 633
            L+  GRR G+ K           ++  + L+   ++  +V +    +W+RIQ++L R    +     +R+ ++ +H  S+E+VKHW NT  G + +KL+A+K R+E+ E ER+ +D+EE   +  KRK+AIE AKQ Q+Y+T+RVK FH  LLL+ V+KERDAQI F+ S+
Sbjct:    8 LVRFGRRCGRAKESTEIRNSEEDQVLYLPLLPSKVDLQQVTIIPHDEWKRIQDSLDRLTREAACLRAERKAKKEMHLRSQEVVKHWTNTYAGMKEQKLEAKKKRDEEIEAERQILDLEEEIYKQGKRKKAIENAKQYQFYQTERVKNFHSGLLLSRVMKERDAQIEFRKSK 178
The following BLAST results are available for this feature:
BLAST of TCONS_00026897 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CC1735.751e-2139.18Coiled-coil domain-containing protein 173 OS=Homo ... [more]
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