TCONS_00026900 (transcript) - C. hemisphaerica

Overview
NameTCONS_00026900
Unique NameTCONS_00026900
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2326

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00026900 ID=TCONS_00026900|Name=TCONS_00026900|organism=Clytia hemisphaerica|type=transcript|length=2326bp
GTTCGGATGTAAACAAACAACtggaaatcatcaaaacaaaatggcgacgG
AGTGAACAATCACAGATCAAAATCAGGAAAAGACCAGCCAGTGATCAGGT
TTTACAGCTCATTCATTGATTGAAAATGTCCTCACTTATCATGCATGGAA
GAAGAGAAGGTCAGGTGAAGAATGGAGGATTAGCATCAGAGTTACCAAGA
ATTGGTCTCATGGCTCAAGGAATCAATCCCAATgagGTTGCTGTCTTTCA
ACCAAAAGATTGGCAGCGAATACAAAATAATCTTGCACGGTACAATGAAG
CTTCAGAAAAAGCAGAACAAAAGAGACGTGATAGAGAGAATCTTCACGCA
GCGTCAAAAGAGTTGGTTAAACATTGGGAGAATACTATCGAAGGCCAGAG
GTTGAAAAAACTTCAAGCTAGAAAACTCCGCGAAGAACAAGAAGAGgAGG
AACGTAAAAAGATTGATATTGAAGAAGCTAAAATTCAAGCACAAAagcgt
aaagaagccattgagAGGGCTAAACAACAACAATATTATGAGACTGATCG
TGTCAAAGGCTTCCATGGTGCACTTTTATTGACTGAAGTTTTAAAGGAAA
GAGATGCACAAATTGCTTTCAAAAATTCCAGACAGGATTttcagaaagaa
agagaaaaccACTTGATCAAATTGCAAAAACAGAATCTTGACGATCTTCT
GAAAGCAGAACAAGAAAAATTACAGGAGACTAGACAAAGATCTACGGAAG
TtgcaaatttccaaaaattacaggtCAAAGATTGTGACAACATCAAACAA
TTGGAAAAAAGTGAGGATAAGGAGGAAGGAAAGACTCTGAAAGATCAATT
CGATGCTTATTGTAACACCAAGAAAACCATCGCGAATAAACACCGCCAAA
AGAAAAAGGCACTTCaagaattttataaaaatgaaatacaatTAAAAAGG
gaAAAAGAGCAAGAAGATCTTTTGAAAGAAGaagctgaaaatgaaaaaat
caaaaaattcgtCAAAGCGAAAAAGaaAATGGCTAACATGCGGAAAGAGA
AAGAACAACAGATTTTCGATAACTTCCAAGAACATACAGAGATGATGCGC
AGTAAACTACAAGACAGCATGCAACAACAAATTGATGACGAAGATGATCG
CATCGCCAAAGCTGTCGCCGAACGCGAACAAAAACGAATGGAAGAATTAA
ACCGCAAACAGCAAAAACAAAAGGACTCTTTACAAGCCATGAAAAATCAT
CGCATACAAATGATGACGGATTCTAATCATCAGCAACAAGAGAATAAAGC
AAAAGATCAAATGTTGTTGCAGCAACGTATCAAGCAAGACAATAAGTTTT
TCGAAGACAAGAAAAAGGAGCGTAAAGAGAAACGGCAAGTAGCAAGCAAA
TTACAAAGCACACACAAAGATCAGATGtTCCAGAAAGAAGACAAGAGTGC
GAAGGAAAGAAACGAGCAATTGGAAGTcgataaaaataataaagagCTTC
TAGTAAAGGAagaagaaattttccaaaattacgCTGATAAAGTCATCACA
AATGCTACCGATAATGGGCGTAACCCATTTCCTTTAATTAAAGCCGCCCG
AGAAGGTCCTGGTGGAGGACGTGGACCTAAATTTGAAGGTAATGCAGGTT
TGAGGCCGAGTTATATAGTTGCTGACGCTACTGGGGTCCAATTACCGCAT
TATTTGAAAGACGAAAGTGTCGGAAATCGCGTTTACGGACATGTCTGTAA
ATCAGGAACCAGACTTGGATTCACATGGTAATTTGTACATGgtacatttt
tctttcaattaattttttttatttccaaattttaatttctgatatatttt
tatattataaaatCCTTGGAAATGATTAATTTATAATGATGCCgtactgt
atatatttttaatgaTTAGATATAATAGAATTTGAACATAATGAACATAA
TTGTCCTGTTAATTCGTAGAATGCTGGAAGCATAGGGAATATTCTACAGA
TAATTGACTACTTGTTGACTATAGGTTGCTGACCCTTTCACGTCCCAGAG
CTTTACACTTTTTGAAGACAAATTCAAGAGTTTTGCACGAAttttttatc
aagttttttATCTAATTTCCACACACGGAGAATACTTTTCCTTGCAAGGA
GTGTGAGTTATCAAATACCGCAGAGAGTAATATGATATTTATAACTGAGG
TGAATCTTGGACTTGCATGACAGTAAAAGAAGTTTCGGTGTCTTCCATGT
GCGTTGTGGTTGTTGTAAACTCTCCTTCGTAAATTTCATCGTCTTCCTCT
AAAGTCATGCTTTCATTCGTTCTTCC
Run BLAST on NCBI

transcript from alignment at sc0000596:4950..21070+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00026900 ID=TCONS_00026900|Name=TCONS_00026900|organism=Clytia hemisphaerica|type=transcript|length=16121bp|location=Sequence derived from alignment at sc0000596:4950..21070+ (Clytia hemisphaerica)
GTTCGGATGTAAACAAACAACtggaaatcatcaaaacaaaatggcgacgG
AGTGAACAATCACAGATCAAAATCAGGAAAAGACCAGCCAGTGATCAGGT
TTTACAGCTCATTCATTGATTGAAAATGTCCTCACTTATCATGCATGGAA
GAAGAGAAGGTCAGGTGAAGAATGGAGGTACCAATTTTTGCCATATTTCA
CTTTCTGATTCGAAATGCAAGCAAAATCTTTGTGTTCTTTACTTTTTTAT
GGCGCGCCGAATTACTTTttattatcaacttttttttcgacaccaacttt
tgttttttgacaTCAGTTTTATTTTCTGATACCAACTTTTCGTTTTTTGC
GACCAACTTCATGTTTTTTCATACAGTCATCTTTTTTTCTCCgacaccaa
ttttttttttcggcaccaattttttttccaatagacctttttttaaagag
gtaaaccctgttgaataattatgtagtccagcataaaaacaatgatacag
ccatgcataattactgtttcatgcatattataataattaagcatggctat
atcattgttttttttgctggactacataattattcaacagggtggcctca
ttattaaaaaaaggtctataccaACTTCTTTTCAAGACCCGGTTACGAAA
CTTCTTTTTTACGAAGTCAACCTTTTTGGTTATTGTCTCGTCCACCCAAC
CTGATTAATATAATGTGTGTCTGGGGCTTTAACGAAATGCCCACCATGAA
ACTTTTCCAAAcgggattgaaaaaataaaaagctgAAACACCAGCATGAA
TACTGACTAGGACGAAGTCTGGAAGTTTGTTTCGGTTGAACTTGAAGTCA
TTCCTANATGCATGGAAGAAGAGAAGGTCAGGTGAAGAATGGAGGTACCA
ATTTTTGCCATATTTCACTTTCTGATTCGAAAtgcaagcaaaatcttttt
agTGTTCTTTACTTACTTTATGGCGCGCCGAATTACTTTttattatcaac
ttttttttcgacaccaacttttgttttttgacatcagttttattttctga
tacaaacttttcgttttttgcgaccaatttcatgttttttcatTTACAGT
CATCTTTTTTTCTCgacaccaattttttttttcgacaccaattttttttc
cgatacCAACTTCTTTTCAAGACCCGGTTACGAAACTTCTTTTTTACGAA
GTCAACCTTTTTGGTTATTGTCTCGTCCACCCAACCTGATTAATATAATT
TGTGTCTGGGGCTTTAACGAAATGCCCACCATGAAACTTTTCCAAAcgga
attgaaaaaataaaaagctgAAACACCAGCATGAATACTGACTAGGACGA
AGTCTGGAAGTTTGTTTCGGTTGAACTTGAAGTCATTCCTATAGTTTGTA
CTTGTATATACTTTGTGTTTTACTTCAAATTTGGTTTGTGaactttcagt
tttttttctgttgttttttcctatcgctagatttcactaaatgtagtcct
ccaaaacaaaagaatcactagatacaatccgtcgtcatgattggagtgcg
ttctatgcgcgtttggGAAAATAAGTAGcagggaaataagtagcttcaat
ttctcttgcctgagaagggttaaagattcgcctctagcccttcgggcttg
aaactcaatggtcatcACGCCCAATCGTGCCGCCTTTTTAGAGCAGAATA
GATTATTGGCAATGATGTAGTAAAGCCCGAAGCAGCCGAAGGGCTAGCTA
GATGTTGaataagtcacgtgacattctAATAGAATTTCAgagcttgacca
atcagaagatTTTCGGAAAGATtagcagaaatattttttccgatgttcac
tttttttgcttggaagagcttaaagcactccatctagcccttcgggcttt
acagaaatctggtATCGCGTTGTGTACCGtaaaaagcacaggtcgaaatc
ttATGTCGACGCTGTGctgacgaatcgagattctattcagcgcgcaatca
acgcagacaaaagtaaccatgacgaccatccaagatcttggatgaagttc
aaagttgatatttttattcccatttagtaattactgttatacatttgggg
atcacgtactgtaaaagatttcttttgaaagaaactcacttcaattaaAC
TTTCTGGGGAATTCTAATATCTTtaaggtttctggggaattcgtaaatag
taaactgcatactgatacagtctgctagatatttttaataaggtaatatt
tgctcttcatctttgatacgttctacagtgattagattgacacatacACG
ATATAATTCCTATTAtcggtcttcagaggttaatatattctttgaaaact
taacctctgatactcagggtacgtTAGAAGGTAATCGAGACAAGAGTtag
tatcggaaaataaaagTTGGTAGTAAGGGAAAAAAATGGTATCGGAAAAA
AAAGTTagtgtcgaaaaaaaaaagttggtgtcgaaaaaaaaaagttggtg
ttgaaaaaaaaaagttggtgtcgaaaaaaaaagttggtgtcgaaaaaaaa
gttggtaataAAATAGTTCTTTTCTAAAGCTGGGCACAGCACATAGATAG
GAAAAGACAGGCTGATTTAATTCATAAATTGAAAACATATAGTACTGCCA
TAAATATGtttcatattttttcttttaatcagTACACAATCTTTAATTtg
taaggggtcactcacataaaTTTTTGGTTAGAAAAATGTCAATTGacgaa
gcgatcaaaaaaaaagtttattacagtatttattttcaccagaatattaa
taaaagttcattctgggctgtttgttttggttttcaaaacagaCGAAGCA
AGTGGGTGGATGGGTTAAAAGTTGTTGGCGTTTTTTTCAAATCTAGCTAC
AGGTATATGTACCACAAAACCCACAGGTACCTCAAAACCAACAATTTCAG
TTCTAGAGttctagaaaaatctaaaatgtttttattagcaTAACTTTTTA
AGATTATGTTGGTATAATAgtttctttattatttaaaacaaaattgagcA
TTATTGGttgggtaaaagtttttttatcaagatttaTCGCTAGAAATcta
acttcaaaatttttgatttttttcaaaaaatggtcagataAGTCACTTGC
TATTGACTAACCTATcaatctttcgttttctaataCCTCTAGGGATAACA
CAAATGTAGGAAAAAAGTCCTAAGTGCTGTAAGCAATGTGTTTATTTTAA
TTGCTctcaaaaaactcatttttaaattgtgggttttgaggtacaaatga
gaaaaattgcaagttttagaatttttcgaTGTCaaactcaaaaatattta
tctatttctCAAACATACTTCTGGAATACATACAATTTTGTGacacattt
tcaagaaaaattatgcaaaaatacaACAATAATGTTAAGCATAACTCAAA
AGCTTAACAAAAAGTATGgatatattacattatatttacTAAAGCTAGTC
GGTTTATTCCTGATACTTTGttaaacatattttcaattGAATCATGGTCT
GGgatgttcatttttttcctcaAATGGGAATGACCTTTAATGGCCCATCT
ATGATGTCATGAACTGGGAAAATGCTTATATCTGGAAGATGGTCTGGGGT
GTCTTCAAGAACAGTGCCACTCCCAACTTTAGGCTTTAGACAGTGCAACT
GAATTGAGTCAACAGCGCCATCTTcatcttttaaaaatcttttcaacaaa
CGACCAATATacaacctttttgttttcttggtgGTGTAGATGGCAGCATA
CCATCTAGATGGCAGCATACCATCTACCAGTGACTTCAGTCTCTTTTGTT
GGCTATGCCAGGACTTTCCAGCAATTCTTCAGTTTTTGGGTGTCGTTTTC
ATCATCAGTTTCATCTTCGGAAATTTCGCTTTCTTCAGATTCAAATTCCT
CACCTTCCTCATCTGATGACGAATCCTCCTCAAACAATTGTTTAGAGTTT
GAATGCTGTTTGGCTGGTAATATTATCAGTGGTTTGATTCCATTAACTTA
CTTTAGCTTTGCTGCAAACTGAAGGATAATGCAATAGTGCAATACTGGGC
ACTGCTTTAATCCTAAAGCCAAAGATTTTTGTTGCAAACAGGTACATTGA
GTTTTGCATTTGATGAATGTTTCTCTGATCTACTCTCTCTTCTttgcttc
ttctttttcagtttccTTCTTCAGTTTCTCATCCCTGATTTctttgacct
tggttgctacaTCTTTAGCCCTCCTCAAGCCGTGTACCTGAGTCACCCTT
GTAGTTGCGGTTGCTTTCTTTTCTCCGTGTGGCTTAACCCTTTTTATTGT
CAGAAGCCCAGGAATTGCTTCTTTCTGCCATCTCCCTTATCAGGGACTGA
GCCTGGCCAGATTTAGCCTTCCAATAATCATGAgaaccttttcttttgtc
aGAAGGAGACATGATGAGTCTGGAGTTGATGTACTGTAGATGTTGATGGA
GGGATTTCTTCTTGTATACATGCTACTGCTCTGTCAAGCTTATCTTACTG
CATGAAGTTTACGCTCAATCCACTTGATGTTATTCCAACCCGCTTGGCAC
ATGAAACTAATGTATCTTTATCTGCCCATATTTAGGCCAAATCTCTCCCA
AGATAGTCATAAAAGCCTCACGatttttgttttgcatcggATTAAAATGG
GATTCTTTAGTTTTTCGATATTCATAGTGGAGATTGCACTGTAATTTCAA
CAACTTCATATGCTTTGCAAAAGTCTTCTTTTCATAGTAAATAATGGTTT
CATTTGCTTCAATTAATGCCTAAATCAGTTTGATTTGCTACCCAGACAat
gtaaaaaagtttctatcatTTGCAATAAATAACTATGTACGGTGATGTTT
TGTAACTTTCTTGAGTGATAACAACAGTCTATGCAGTTTCCAAAATCATT
TCAACACAATTAGGAAAACATGTAATCCttaatttttacatacaaaATAC
CTATATGAAATACAANTGGGACTCCTCGCACCATCAAACAAGTTTCTTGA
TAAAGGCAgcccaaaaaataattatttagatCAGAAATTTAGTGTGGGTT
TTGTGGTACATATACCTGTAGAAACATTGATATTTTTTACTCGCCATGTT
TCAGTTTGATCGCTTCGtctgttttgaaaaccaaaacaaatggCCCGGAA
TGAACTTTTATTGATATTTCTGGTGAAAATGAATACTGTAATAAATCACC
ACAAACATCATCAATTGTGTCAACTGgacaaacttaaaaaaattagcaaa
aatagAGTCAACAAGTCAGTAAACTTTATGCTATATATGTATTTTATAAT
TTAGGATTAGCATCAGAGTTACCAAGAATTGGTCTCATGGCTCAAGGAAT
CAATCCCAATgaggtaggtaaacatccaaaGGTTTATATATCTCACTATA
AATAGAAGAATTGAAAAACTCTTTAATATAAAATGCTATGGAGATCACTT
TCCTAGTTTCAGGTAGTGTGGTTTCTGTGTCAacattcaacaaaataaaa
cagaatttgtctaaaattaaaaaatatatactttttaatgaaaattgtaT
GCACTTGAAATTCTTATTTAGGTTGCTGTCTTTCAACCAAAAGATTGGCA
GCGAATACAAAATAATCTTGCACGGTACAATGAAGCTTCAGAAAAAGCAG
AACAAAAGAGACGTGATAGAGAGAATCTTCACGCAGCGTCAAAAGAGTTG
GTTAAACATTGGGAGAATACTATCGAAGGCCAGAGGTTGAAAAAACTTCA
AGCTAGAAAACTCCGCGAAGAACAAGAAGAGGTACCATACCAAATTTGCT
CTTTCAAGCGTACTCAATTTATTCTGTGTCTTTGTCACTTTGTTAgtctt
actttttctttttgctttataCTCTTCACTCTTTATATTAACTGAACTCT
GTATTAGTGAACAATTGATTAATTGAACCCCTTAGCGTTTGAGTTTTGTG
AAACTTTTGTATAGAAAGTGAATTATGATAGCTTTGGTTGGCTTTAGTTC
AAGATTCTTAAACATTCTCAAGTTAGCTATGTATCCCATCAAATACTCTA
AAAcgttttctttaattttgattacTCAATTTTCCAGGCATATACTGTaa
cctttttttgtaaaattatcattttcaggAGGAACGTAAAAAGATTGATA
TTGAAGAAGCTAAAATTCAAGCACAAAagcgtaaagaagccattgagAGG
GCTAAACAACAACAATATTATGAGACTGATCGTGTCAAAGGCTTCCATGT
GAGTAGTTTTAAAGTCcctacttaaaaaaaaatccattgATCCTAAGTCA
CAGCTGATGGTAGACAACTTTCACTAGAGGCCATTCTATTCAACGATACA
ATTAGTAAATGTCCTAGGACCTCAAAATGTAATACTTTGTAATGGTATGT
ATGCGTTATTCAACTTTAATGAATATCTTTCTTCTCATAGGGTGCACTTT
TATTGACTGAAGTTTTAAAGGAAAGAGATGCACAAATTGCTTTCAAAAAT
TCCAGACAGGATTttcagaaagaaagagaaaaccACTTGATCAAATTGCA
AAAACAGGTACCTATTTAGAGTTATGTTCAATAATTTGGTGCAAATCTAG
AGGACCCAATTTCTAAAAGAATAATacacaatttttcatatttcgttttt
ggacctaccccggtggggtggaggtcctataaattcacctctgtccgtcc
gtccgtccgttcgttaccagcttttcccaagattgaatcataggaatcat
ttggtttttggtacaaaggtgcaaaatggtagtggccaaaatgtgacgga
gacctattttcgaaaaaaaaatatgaaaagaatatttcaagatcatgaaa
ttttggtttctaaacgttttttttataagaaacaaacgactaattttaat
aaatcgtcactatttgtgttctgaatgatNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtttgtgttctga
atgattgtttaacgttcatgctcacgtagatatcaattatatatgtgtta
aatgcataaccaggtaggtccataaaagtatcacttgtttgtaTTGAAAT
TTCATCTCATATCATCAATATCTtagatttgattttcaaatacGCCACCA
AAATGACTTTTTACATATTTAACGTTTCTTTATCAGAATCTTGACGATCT
TCTGAAAGCAGAACAAGAAAAATTACAGGAGACTAGACAAAGATCTACGG
AAGTtgcaaatttccaaaaattacagtaagctatttttttctcaattttg
agtGGATTCATTGAATAATCTTTGAATAAATGTATATATCATTTGAATTT
CATTCTATAATCTGTAAGCTTTTTTGATAAAGGTTACTtttaaatttcat
gatttcaagatttttttttttaggttaaaCCAATCCATTTATTTGATCAC
TTTGAAAAGCTTAAGTAGAACTTTTAATCAATATTCAAGTTTTACTTTAC
AACTGATCGATGtgtcttttttttatataagggtCAAAGATTGTGACAAC
ATCAAACAATTGGAAAAAAGTGAGGATAAGGAGGAAGGAAAGACTCTGAA
AGATCAATTCGATGCTTATTGTAACACCAAGAAAACCATCGCGAATAAAC
ACCGCCAAAAGAAAAAGGCACTTCaagaattttataaaaatgaaatacaa
tTAAAAAGGGTAAGATCGTTTTTTGTTTGTGAAAACATGTAATATCTGTT
CGTGATACTTTTCCATTACTATCATACTTGTCTTTTCAATGATTTTATCC
AGGGGTACTAGGTGGTTTGCGAGATGATGGTTAAATATCCGagtcaaatt
tcgaaaatcgaccctcagagagaaaattttgtccatttttgacgtttttg
ctacCCTTAGAGTAATTTTAGACcaaatttcaataatttatgACCCCTAT
TTTTGAATTTGGTAATTTTGGAatccttacagagactcaattgctGTTTA
AATGGTTTCTGTATCCTTTTGAATGACTTTCGGAAGTGTGAAAAAAGAAC
CCTTATGacgcacccattttgcctaagtaacccccACCCGGATTTTAATC
CTATGGGATCCTTTTCAATGTTTTAGTAGCAATTTTATAATTGGTCAATA
ACCCGTCAATGGAAGAGGAAATATTGTCGGAGAAATTAATGACAcctcaa
tttttctttcaggaAAAAGAGCAAGAAGATCTTTTGAAAGAAGaagctga
aaatgaaaaaatcaaaaaattcgtCAAAGCGAAAAAGGTAAGAAATAACT
CTATCTACTCCCTACACATAATGATAGAGTCGATTTCAtgctttttaaat
gaaaaaagtaGGCACGCCTCgtatgctgaaaaaccccaatCAAAGAAAGA
ATTCCTCAAAAAAGGTTAGCAGACATTGTATAGCCTTTCATTAACCCTTT
Taaaagtgccaatgtcgtatttatcagacatgggctatgtaggatgggga
agccctcctgtaatgcccagtttgagttagaaatcgtcatttttggtcta
actcgtacgaatcggattgggcttcatagccaagcaaaaaaaaaaaatcN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNgcaaaaaaaaaaatcaaaagtgagtc
ttttcagcgagattttaagctaaaaagtcaaagaaatgcaaaaatttgac
aaaaatcaacttttttaagattttgacagttttttgataatttctgGTTT
CTGAACGAGttatccaagaacctccaaatttggactctaagctatccaac
agactataaacgagcttctaactccttctagatccggagatataagcttT
AAAGTtcgaactagcgattttctttaaaaaactaagaaaaaatgaccgtg
gcacttaaagggttaacgcCCTCATTAGATAATTGTGATTTATTAACTAG
AAGTAATATTCAACGGCGTGAAtatgttttatttactttttagaaAATGG
CTAACATGCGGAAAGAGAAAGAACAACAGATTTTCGAGTAAGTTTCCATT
TCTTCCAATTCTTGATAACATTTGATCTTGATTGTTTGTCCGTttagaag
aaaagaagaagaacgCTGAGATCTCCTGAACTCATTTAGGGTGTTTTTGC
TGAATTTTAATCTTATTGTCTTCTTTCTCCATTCTTCACAGTAACTTCCA
AGAACATACAGAGATGATGCGCAGTAAACTACAAGACAGCATGCAACAAC
AAATTGATGACGAAGATGATCGCATCGCCAAAGCTGTCGCCGAACGCGAA
CAAAAACGAATGGTGAGGAATTTTCATCGAATGTCTCTTTTCCGAGTCCA
TCTATGACAGATCTTCCATTCATGATGTATACgaggaaaaatatatttga
aaaattttgaatattaatTTGTTCATTCTTTTGATCTTTCCATGTAACAG
GAAGAATTAAACCGCAAACAGCAAAAACAAAAGGACTCTTTACAAGCCAT
GAAAAATCATCGCATACAAATGGTAAGAGCTCTTATTCATCTTACTTCTC
TATTAAACAAAGTCAAGCCCATCTTGAAAGACGATGTGAAGTCTTTGTTG
ATTTTTGCGTTTTCAACCATTGAGTCGAAAGCCCCAAAGGGACTAAGGAT
TAAACTCTTGCAtcggaaatgaagccacttagtTCCCCTCTTAAACGAGT
GACACGCGTTGTTTTCACAAGAAGGGCTGGATTGCAAGTAAAATATATCG
CCAGATCTCGAAAAACGTGTCGTGTGAAGAATAGAaaatcgctagattca
atctgtcattctaaatgcggcgcaaatcttaaaaggtttcactttttctt
gctcgAGAAAGCTCAAAGATTCCTTTCTAGCACTTCAGGCtttaatgttt
ttgataattgcATTATTTTATTGAAGCTAATGGCCAGATCAGATGGTTCC
AgtgatttcattgttttttttattgccAGATGACGGATTCTAATCATCAG
CAACAAGAGAATAAAGCAAAAGATCAAATGTTGTTGCAGCAACGTATCAA
GCAAGACAATAAGGTAAAAAAGTTTACATCCAAAAAGAACGAATGTAGTT
TAAACTCCNCTCCTGAACTCATTTAGGGTGTTTTTGCTGAATTTTAATCT
TATTGTCTTCTTTCTCCATTCTTCACAGTAACTTCCAAGAACATACAGAG
ATGATGCGCAGTAAACTACAAGACAGCATGCAACAACAAATTGATGACGA
AGATGATCGCATCGCCAAAGCTGTCGCCGAACGCGAACAAAAACGAATGG
TGAGGAATTTTCATCGAATGTCTCTTTTCCGAGTCCATCTATGACAGATC
TTCCATTCATGATGTATACgaggaaaaatatatttgaaaaattttgaata
ttaatTTGTTCATTCTTTTGATCTTTCCATGTAACAGGAAGAATTAAACC
GCAAACAGCAAAAACAAAAGGACTCTTTACAAGCCATGAAAAATCATCGC
ATACAAATGGTAAGAGCTCTTATTCATCTTACTTCTCTATTAAACAAAGT
CAAGCCCATCTTGAAAGACGATGTGAAGTCTTTGTTGATTTTTGCGTTTT
CAACCATTGAGTCGAAAGCCCCAAAGGGACTAAGGATTAAACTCTTGCAt
cggaaatgaagccacttagtTCCCCTCTTAAACGAGTGACACGCGTTGTT
TTCACAAGAAGGGCTGGATTGCAAGTAAAATATATCGCCAGATCTCGAAA
AACGTGTCGTGTGAAGAATAGAaaatcgctagattcaatctgtcattcta
aatgcggcgcaaatcttaaaaggtttcactttttcttgctcgAGAAAGCT
CAAAGATTTCTTTCTAGCACTTCAGGCtttaatgtttttgataattgcAT
TATTTTATTGAAGCTAATGGCCAGATCAGATGGTTCCAGtgatttaattg
ttttttttattgccAGATGACGGATTCTAATCATCAGCAACAAGAGAATA
AAGCAAAAGATCAAATGTTGTTGCAGCAACGTATCAAGCAAGACAATAAG
GTAAAAAAGTTTACATCCAAAAAGAACGAATGTAGTTTAAACTCCTTAGC
TGCTAAATCCTCAATCTAAACTTTCAAAGACACGATTTTTTGTGACTGTA
cgaaaattcatgatatgcaccatatAATATCAATATCTTTCACATAATCA
CCAACTGATTGGTtacaagtgacgtattgactgattttactgGATTTTAT
GTCACTTACAAACCAATCAGATATTGGGAATGTAATTTCAGAAGACATAG
CAATGGCGCATATGAAATATACCACTGGAAAGTCTTctaagaatttttaa
aattttccacccaataatacgtcactttttctattctttaagtgacgtat
tgggtgaaaattctcggaagactctccagtggtgcatatcatgaatagct
taATTCTTCACGATGATTTGAAACTCAGTATCACGTCAATCAACTACGTT
TAACATCTTTTTCCCCTTTCAGTTTTTCGAAGACAAGAAAAAGGAGCGTA
AAGAGAAACGGCAAGTAGCAAGCAAATTACAAAGCACACACAAAGATCAG
ATGGTACGTAACCattattttcttgaaatgaGCTTAGTAAcgctcaaatt
gcagatgtagaacgataaactcggtcTACAATCACTCACCATCTGGATAA
TGATATCACTTTatctcactaacattctgccgattggtagtgtgaaggtt
tcgatcacagactttcaccgcaatggactgtgtttGAATCCCAAGCTCTT
CCAGAGAGGATGTTAGGGAAATATGTTGATAGACTCTCCACCTTCACTCA
CATTATTTTCTTGGTTTCGGAACCTGTTTTCTTACTAACAAAAGTACGTA
TCACGTTTTATGGGGTAGTTACACCCTTTGCAGTTGAGCTAGTCTTGGTT
GGGCGTGCGTGAGAGGTGCGTTCCCTGAGAATGGCCTGAGAAATGTCAAA
TAGCGACAACAGGTGACAGAGATagttagcttctgatttgtctagatcct
gattgactgaAGAGCAGTTACTTCACCGtccaggggggggtcaagcctCA
GGGTACTAAAGCATAGCCTAGAGAGGGTACTTatctaaaaaaaactttga
ctcATACCACCCACCCAaataagtacccgggtacttaatGACTTTTCCCT
TCTAGACCCTATACCAACCcaaaaagtacccgggtacttaaggACTTTTC
TCTTCTAGACCCCATacctctttgtttttatttcaaaatgttcgAACACT
TTgttttgttatgattcgaaAGTACTTAGTGCTCTGTTTACATTGAGAGA
TCAACCTTGTTCTCAAGTGATacattgtttcttttttcttaactAGCTAC
TCGGCAATCATAATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGGCAATCATAATGAATG
AGGACTTAGGTATTCATCAAAATGTTGTACAGTTACAGTATACAAAAGGC
AAAATATTATTTCCCAAGTAAAACGCAGGAAAAGCTTCTTCAGGAGCTTT
GCTTTCTTATGGGCTTCTGattcacaagcttctgataaaAGATTCGAACG
TCTAGGaaacttttcgaatgtttttgaagtagaaaagaaaaaatgtaaga
gagagagagaaaatatATCAGTGAAAATAAACACTCAGAAGGAGTTCATT
ACATCACTATATCACGTGAAAACATAATAGAATAGAAGGAAAGGGAAACA
CTCAGATGGAGctcgatcaaaacaaacaaaacaggaccttggctttcact
ttcacttcaaaacttttccctaaatttctttttcttggcaGGTCTTGTTA
TGTTTTGATATTACATCAACAATATAAagcaatttaaaactttcttttca
tCGATAATATTTTTATATGGCAGAATCATGTTTCTTTCTGTTCTTCGtgt
caaattttatatttttaaccaTCCAAtgatggaataaaaatgtcacaGGT
TTTTAACAATACTTAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNCCCCCCCCCCTgcaccgtcctcaaaagtgcaaatacatgaAC
TCGATATTGTTCTGTCTTCGTGCACGCAAGGGGGAAATAAATTTCTTACa
cttttatttcgattttttttagtTCCAGAAAGAAGACAAGAGTGCGAAGG
AAAGAAACGAGCAATTGGAAGTcgataaaaataataaagagCTTCTAGTA
AAGGAagaagaaattttccaaaattacgCTGATAAAGTCATCACAAATGC
TACCGATAATGGGCGTAACCCATTTCCTTTAATTAAAGCCGCCCGAGAAG
GTCCTGGTGGAGGACGTGGACCTAAATTTGAAGGTAATGCAGGTTTGAGG
CCGAGTTATATAGTTGCTGACGCTACTGGGGTCCAATTACCGCATTATTT
GAAAGACGAAAGTGTCGGAAATCGCGTTTACGGACATGTCTGTAAATCAG
GAACCAGACTTGGATTCACATGGTAATTTGTACATGgtacatttttcttt
caattaattttttttatttccaaattttaatttctgatatatttttatat
tataaaatCCTTGGAAATGATTAATTTATAATGATGCCgtactgtatata
tttttaatgaTTAGATATAATAGAATTTGAACATAATGAACATAATTGTC
CTGTTAATTCGTAGAATGCTGGAAGCATAGGGAATATTCTACAGATAATT
GACTACTTGTTGACTATAGGTTGCTGACCCTTTCACGTCCCAGAGCTTTA
CACTTTTTGAAGACAAATTCAAGAGTTTTGCACGAAttttttatcaagtt
ttttATCTAATTTCCACACACGGAGAATACTTTTCCTTGCAAGGAGTGTG
AGTTATCAAATACCGCAGAGAGTAATATGATATTTATAACTGAGGTGAAT
CTTGGACTTGCATGACAGTAAAAGAAGTTTCGGTGTCTTCCATGTGCGTT
GTGGTTGTTGTAAACTCTCCTTCGTAAATTTCATCGTCTTCCTCTAAAGT
CATGCTTTCATTCGTTCTTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015112XLOC_015112Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026900-exon-sc0000596-1491911889:4950..5108TCONS_00026900-exon-sc0000596-1491911889:4950..5108Clytia hemisphaericaexon
TCONS_00026900-exon-sc0000596-1510915933:4950..5108TCONS_00026900-exon-sc0000596-1510915933:4950..5108Clytia hemisphaericaexon
TCONS_00026900-exon-sc0000596-1575043694:4950..5108TCONS_00026900-exon-sc0000596-1575043694:4950..5108Clytia hemisphaericaexon
TCONS_00026900-exon-sc0000596-1491911889:5826..5843TCONS_00026900-exon-sc0000596-1491911889:5826..5843Clytia hemisphaericaexon
TCONS_00026900-exon-sc0000596-1510915933:5826..5843TCONS_00026900-exon-sc0000596-1510915933:5826..5843Clytia hemisphaericaexon
TCONS_00026900-exon-sc0000596-1575043694:5826..5843TCONS_00026900-exon-sc0000596-1575043694:5826..5843Clytia hemisphaericaexon
TCONS_00026900-exon-sc0000596-1491911889:10304..10362TCONS_00026900-exon-sc0000596-1491911889:10304..10362Clytia hemisphaericaexon
TCONS_00026900-exon-sc0000596-1510915933:10304..10362TCONS_00026900-exon-sc0000596-1510915933:10304..10362Clytia hemisphaericaexon
TCONS_00026900-exon-sc0000596-1575043694:10304..10362TCONS_00026900-exon-sc0000596-1575043694:10304..10362Clytia hemisphaericaexon
TCONS_00026900-exon-sc0000596-1491911889:10571..10780TCONS_00026900-exon-sc0000596-1491911889:10571..10780Clytia hemisphaericaexon
TCONS_00026900-exon-sc0000596-1510915933:10571..10780TCONS_00026900-exon-sc0000596-1510915933:10571..10780Clytia hemisphaericaexon
TCONS_00026900-exon-sc0000596-1575043694:10571..10780TCONS_00026900-exon-sc0000596-1575043694:10571..10780Clytia hemisphaericaexon
TCONS_00026900-exon-sc0000596-1491911889:11128..11247TCONS_00026900-exon-sc0000596-1491911889:11128..11247Clytia hemisphaericaexon
TCONS_00026900-exon-sc0000596-1510915933:11128..11247TCONS_00026900-exon-sc0000596-1510915933:11128..11247Clytia hemisphaericaexon
TCONS_00026900-exon-sc0000596-1575043694:11128..11247TCONS_00026900-exon-sc0000596-1575043694:11128..11247Clytia hemisphaericaexon
TCONS_00026900-exon-sc0000596-1491911889:11440..11556TCONS_00026900-exon-sc0000596-1491911889:11440..11556Clytia hemisphaericaexon
TCONS_00026900-exon-sc0000596-1510915933:11440..11556TCONS_00026900-exon-sc0000596-1510915933:11440..11556Clytia hemisphaericaexon
TCONS_00026900-exon-sc0000596-1575043694:11440..11556TCONS_00026900-exon-sc0000596-1575043694:11440..11556Clytia hemisphaericaexon
TCONS_00026900-exon-sc0000596-1491911889:12986..13074TCONS_00026900-exon-sc0000596-1491911889:12986..13074Clytia hemisphaericaexon
TCONS_00026900-exon-sc0000596-1510915933:12986..13074TCONS_00026900-exon-sc0000596-1510915933:12986..13074Clytia hemisphaericaexon
TCONS_00026900-exon-sc0000596-1575043694:12986..13074TCONS_00026900-exon-sc0000596-1575043694:12986..13074Clytia hemisphaericaexon
TCONS_00026900-exon-sc0000596-1491911889:13331..13508TCONS_00026900-exon-sc0000596-1491911889:13331..13508Clytia hemisphaericaexon
TCONS_00026900-exon-sc0000596-1510915933:13331..13508TCONS_00026900-exon-sc0000596-1510915933:13331..13508Clytia hemisphaericaexon
TCONS_00026900-exon-sc0000596-1575043694:13331..13508TCONS_00026900-exon-sc0000596-1575043694:13331..13508Clytia hemisphaericaexon
TCONS_00026900-exon-sc0000596-1491911889:14012..14086TCONS_00026900-exon-sc0000596-1491911889:14012..14086Clytia hemisphaericaexon
TCONS_00026900-exon-sc0000596-1510915933:14012..14086TCONS_00026900-exon-sc0000596-1510915933:14012..14086Clytia hemisphaericaexon
TCONS_00026900-exon-sc0000596-1575043694:14012..14086TCONS_00026900-exon-sc0000596-1575043694:14012..14086Clytia hemisphaericaexon
TCONS_00026900-exon-sc0000596-1491911889:14843..14886TCONS_00026900-exon-sc0000596-1491911889:14843..14886Clytia hemisphaericaexon
TCONS_00026900-exon-sc0000596-1510915933:14843..14886TCONS_00026900-exon-sc0000596-1510915933:14843..14886Clytia hemisphaericaexon
TCONS_00026900-exon-sc0000596-1575043694:14843..14886TCONS_00026900-exon-sc0000596-1575043694:14843..14886Clytia hemisphaericaexon
TCONS_00026900-exon-sc0000596-1491911889:15041..15161TCONS_00026900-exon-sc0000596-1491911889:15041..15161Clytia hemisphaericaexon
TCONS_00026900-exon-sc0000596-1510915933:15041..15161TCONS_00026900-exon-sc0000596-1510915933:15041..15161Clytia hemisphaericaexon
TCONS_00026900-exon-sc0000596-1575043694:15041..15161TCONS_00026900-exon-sc0000596-1575043694:15041..15161Clytia hemisphaericaexon
TCONS_00026900-exon-sc0000596-1491911889:15300..15371TCONS_00026900-exon-sc0000596-1491911889:15300..15371Clytia hemisphaericaexon
TCONS_00026900-exon-sc0000596-1510915933:15300..15371TCONS_00026900-exon-sc0000596-1510915933:15300..15371Clytia hemisphaericaexon
TCONS_00026900-exon-sc0000596-1575043694:15300..15371TCONS_00026900-exon-sc0000596-1575043694:15300..15371Clytia hemisphaericaexon
TCONS_00026900-exon-sc0000596-1491911889:16816..16899TCONS_00026900-exon-sc0000596-1491911889:16816..16899Clytia hemisphaericaexon
TCONS_00026900-exon-sc0000596-1510915933:16816..16899TCONS_00026900-exon-sc0000596-1510915933:16816..16899Clytia hemisphaericaexon
TCONS_00026900-exon-sc0000596-1575043694:16816..16899TCONS_00026900-exon-sc0000596-1575043694:16816..16899Clytia hemisphaericaexon
TCONS_00026900-exon-sc0000596-1491911889:17372..17452TCONS_00026900-exon-sc0000596-1491911889:17372..17452Clytia hemisphaericaexon
TCONS_00026900-exon-sc0000596-1510915933:17372..17452TCONS_00026900-exon-sc0000596-1510915933:17372..17452Clytia hemisphaericaexon
TCONS_00026900-exon-sc0000596-1575043694:17372..17452TCONS_00026900-exon-sc0000596-1575043694:17372..17452Clytia hemisphaericaexon
TCONS_00026900-exon-sc0000596-1491911889:20172..21070TCONS_00026900-exon-sc0000596-1491911889:20172..21070Clytia hemisphaericaexon
TCONS_00026900-exon-sc0000596-1510915933:20172..21070TCONS_00026900-exon-sc0000596-1510915933:20172..21070Clytia hemisphaericaexon
TCONS_00026900-exon-sc0000596-1575043694:20172..21070TCONS_00026900-exon-sc0000596-1575043694:20172..21070Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000596supercontigsc0000596:4950..21070 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.090151	3.49737	1.38488	1.64309	30.9742	24.5776	13.3344	11.6711	10.5088	10.7663	8.9543	6.35217	2.85339	0.134264	0.457906	1.89667	0.988975	2.69022	2.81816	2.42801	0.0897942	1.41466	1.21709	0.772864	23.404	17.3677	8.21204	7.07738	2.5838	0.604646
Blast
[Close]
BLAST of TCONS_00026900 vs. Swiss-Prot (Human)
Match: CC173 (Coiled-coil domain-containing protein 173 OS=Homo sapiens GN=CCDC173 PE=2 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 5.737e-21
Identity = 67/171 (39.18%), Postives = 107/171 (62.57%), Query Frame = 3 
Query:  135 LIMHGRREGQVKNG-----GLASELPRIGLMAQGINPNEVAVFQPKDWQRIQNNLARYNEASEKAEQKRRDRENLHAASKELVKHWENTIEGQRLKKXXXXXXXXXXXXXXXXXXXXXXXXXQAQKRKEAIERAKQQQYYETDRVKGFHGALLLTEVLKERDAQIAFKNSR 632
            L+  GRR G+ K           ++  + L+   ++  +V +    +W+RIQ++L R    +     +R+ ++ +H  S+E+VKHW NT  G + +KL+A+K R+E+ E ER+ +D+EE   +  KRK+AIE AKQ Q+Y+T+RVK FH  LLL+ V+KERDAQI F+ S+
Sbjct:    8 LVRFGRRCGRAKESTEIRNSEEDQVLYLPLLPSKVDLQQVTIIPHDEWKRIQDSLDRLTREAACLRAERKAKKEMHLRSQEVVKHWTNTYAGMKEQKLEAKKKRDEEIEAERQILDLEEEIYKQGKRKKAIENAKQYQFYQTERVKNFHSGLLLSRVMKERDAQIEFRKSK 178
The following BLAST results are available for this feature:
BLAST of TCONS_00026900 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CC1735.737e-2139.18Coiled-coil domain-containing protein 173 OS=Homo ... [more]
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