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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026906 ID=TCONS_00026906|Name=TCONS_00026906|organism=Clytia hemisphaerica|type=transcript|length=2258bpRun BLAST on NCBI transcript from alignment at sc0000596:49426..87433- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00026906 ID=TCONS_00026906|Name=TCONS_00026906|organism=Clytia hemisphaerica|type=transcript|length=38008bp|location=Sequence derived from alignment at sc0000596:49426..87433- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00026906 vs. Swiss-Prot (Human)
Match: KCNA3 (Potassium voltage-gated channel subfamily A member 3 OS=Homo sapiens GN=KCNA3 PE=1 SV=3) HSP 1 Score: 213.386 bits (542), Expect = 1.552e-59 Identity = 142/412 (34.47%), Postives = 226/412 (54.85%), Query Frame = 2
Query: 1118 EKIRKKQPISDEMKVNDERVTLNVSGDIFETRKTTLRRFPGTLLGDEYRMLNFYCTKTQTYFMNRNRRAFEAILYFYQSDGDLRLPPDLRMEIFIQECIFYGIPKVYIDSMRLKAGVLSKTIERGRKEAKPIIESKTCRAKIWNFLENPETSQYAKAFAVFSFINITLSVLLACIDTVAALKSTNPF-------------------------WSNPFELGELYLNSWXXXXXXXXXXXCPKKYIFMRKWLNWVDLIAVVPYFIFL---IINRGGTS----SIGXXXXXXXXXXXXXXXXSKHSARIKEVGDILSDSFQDLYIFVLCLFIMTVFSGAILYFAELSHPYTQFTSIPESMWWALQTVVTLGYGDITPVTIVGRVYSAFFMVFGALTIALPVLSIVMKFTHMYSMD 2257
E + P + E ERV +N+SG FET+ TL +FP TLLGD R + ++ YF +RNR +F+AILY+YQS G +R P ++ ++IF +E FY + + ++ R G L R+E +P+ R ++W E PE+S A+ A+ S + I +S+++ C++T+ + + +S+PF + E WF FE L+RF CP K F R +N +D++A++PYFI L + R G S+ +L+++R VRV R+F+LS+HS ++ +G L S ++L + + LFI + + +YFAE P + F+SIP++ WWA+ T+ T+GYGD+ PVTI G++ + + G LTIALPV IV F + Y +
Sbjct: 87 EPLPPSLPAAGEQDCCGERVVINISGLRFETQLKTLCQFPETLLGDPKRRMRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRIRRPVNVPIDIFSEEIRFYQLGEEAMEKFREDEGFL-------REEERPLPRRDFQR-QVWLLFEYPESSGPARGIAIVSVLVILISIVIFCLETLPEFRDEKDYPASTSQDSFEAAGNSTSGSRAGASSFSDPFFVVETLCIIWFSFELLVRFFACPSKATFSRNIMNLIDIVAIIPYFITLGTELAERQGNGQQAMSLAILRVIRLVRVFRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEADDPTSGFSSIPDAFWWAVVTMTTVGYGDMHPVTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRE 490 The following BLAST results are available for this feature:
BLAST of TCONS_00026906 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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