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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026927 ID=TCONS_00026927|Name=TCONS_00026927|organism=Clytia hemisphaerica|type=transcript|length=977bpRun BLAST on NCBI protein sequence of TCONS_00026927-protein >TCONS_00026927-protein ID=TCONS_00026927-protein|Name=TCONS_00026927-protein|organism=Clytia hemisphaerica|type=polypeptide|length=290bp MSKTFDLQSQLPPLPLPTLQDTCNKYLDSVKPFLTKDEFMETGFKVELFQRun BLAST on NCBI transcript from alignment at sc0000596:145990..160786- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00026927 ID=TCONS_00026927|Name=TCONS_00026927|organism=Clytia hemisphaerica|type=transcript|length=14797bp|location=Sequence derived from alignment at sc0000596:145990..160786- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000596:145990..160786- >TCONS_00026927 ID=TCONS_00026927|Name=TCONS_00026927|organism=Clytia hemisphaerica|type=CDS|length=6111bp|location=Sequence derived from alignment at sc0000596:145990..160786- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00026927 vs. Swiss-Prot (Human)
Match: OCTC (Peroxisomal carnitine O-octanoyltransferase OS=Homo sapiens GN=CROT PE=1 SV=2) HSP 1 Score: 142.51 bits (358), Expect = 1.007e-37 Identity = 86/264 (32.58%), Postives = 145/264 (54.92%), Query Frame = 2
Query: 158 DTCNKYLDSVKPFLTKDEFMETGFKVELFQNGIGKELHNKLMQLAKHSKNWAQDRWYD-SYFDYRGSNPMMSNISGGYESRFDFDQPCHGLVIERAANWIHSMTTIYQRVVKQEVPVQKLGRQFPMDMSQYANFFCGSRLPGEKRDTLMHNIHLLPQPDGSMHVVAPSKHIVVMKNAHIFHVKVIDDNNVILHPKSIQRQLERIHEICKDLEEGEGVAALTMGTRDKWYKAYKHLCILDRQNKTNINLINQSIFAFAFEDVETH 946
++ KYL+SVKPF ++E+ +T V+ FQ+GIG++LH KL++ AK +NW ++ W + +Y D R + + N +G + P G +ER + + +Q + K++VPV K+G P+DM+Q+ F ++PG RD++M+ + + +G +P+ HIVV+ F VI + ++ P + RQL IH+ C +G G+AALT R +W KA ++L LD +N + I S+ ++ ED H
Sbjct: 30 ESLKKYLESVKPFANQEEYKKTEEIVQKFQSGIGEKLHQKLLERAKGKRNWLEEWWLNVAYLDVRIPSQLNVNFAGPAAHFEHYWPPKEGTQLERGSITLWHNLNYWQLLRKEKVPVHKVGNT-PLDMNQFRMLFSTCKVPGITRDSIMN--YFRTESEGR----SPN-HIVVLCRGRAFVFDVIHE-GCLVTPPELLRQLTYIHKKCHSEPDGPGIAALTSEERTRWAKAREYLIGLDPENLALLEKIQSSLLVYSMEDSSPH 284 The following BLAST results are available for this feature:
BLAST of TCONS_00026927 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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