TCONS_00026930 (transcript) - C. hemisphaerica

Overview
NameTCONS_00026930
Unique NameTCONS_00026930
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1488

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00026930 ID=TCONS_00026930|Name=TCONS_00026930|organism=Clytia hemisphaerica|type=transcript|length=1488bp
tttgttttcaattttgtttttctttcagagctagataaaaaacatcaaga
aATTTCTGATACAGGTGGAAAATCATGAATTCATCCATCAAAGAGCTTTT
TATTTGGTCATTAAACAACGGAGTTCAGATACGAGGTTTAACAATCAAAG
ATTTCCCTCTATCAGGGCGTGGAGTCATGACGACGCGCcatataaataaa
aatgatcTAATCATCAAAATTCCAAGACGCTTTTTAATCACTTTTGATAC
AGTATTGATATCAATGAAATGGTGCATCCGAGATGAATCGAACCATGGTT
TAACAGCCAAagatttatttctatttttcatcTTAGTGGAAAAATGGAAA
GGAAAAGCTTCTAAATTTCGTATTTACATTGAAAGTATCCCTGAGACATA
CACTACGCCGTCATGCATACCTGAATCTAAGGCTTCTCTTTTACCAGACT
TTGTGAGTTTAGAAAGGAACAAACAACGAGCAAAGATCGCAGGACATTTT
AAACGACTGACACATTTTTTAACCGCCTATCAaagtaaaatgaaagaaaa
gagACTTAATTTTGATGATGTGATGTGGGCCTGGAATGTTGTGAACACTC
GTTCAGTGTATCTGAACCCACGTAACTTAACCtgttcactggatgcattt
acGAAGTTATCGGAAGTTGATTTTGCATTGGCACCGCTTCTTGATATGTT
GAATCATGAGAGTGGAGCTCAGGTGGAAGCAAAATTTAACACCAAATCAA
ACCATTacgaaattcgaacgttcgatagTTACGAACCGAAAGAACAAGTT
TTTATCAATTACGGTAGTCATGGTAACCGAATGCTTTTTTTCGAATACGG
GTttattttaccgaacaatatTCATGCGGTATGTCCTATATCAAGACATC
TCTTTTTGATACATTTTCCAATGAATAGTCAATGTCAAGATTCAgaactt
ttgaaaattggtatTTCTCTTGAGAAAATGAACTGCACGCGTGAAGGTTA
TTTTAATTGGGCTTTCATAAACGCCGCTCATATATTATTCGAACAACATT
CGCCAGATATAAGGAAACTACCCAGCCAATGTGTGGGAGGTCGTTGTAAA
GTTTATGAGCGAGTTTTAAATCTCATCCATGATTTAGAGAAATTTTACGA
TAACCATTTGAGCAAACTACGAAATGAACAAAATGGTGCTTTGAGACAAG
TGTTTTATCTACTGGAAAACGAACGCAATATTTTGTActtgacaaaagaa
aagtggaCAACCGATTGTCAAATTATGCTGAGTTGAGATTTCTTGCTACG
AAAACTCCAGAATGGGAAATGAagtcacttatttcccatcctggACACGT
GACCcgtgtgtttttcaaaaaaaaaatttaaatgaggGGTAAAGTTAacg
cttcactttttcttgcttgagaaaggttgaaaattCATCTCTAGTCCCTT
CGCCCCACTCAATGGTTTGAACATTCTTAAGAAAAACN
Run BLAST on NCBI

protein sequence of TCONS_00026930-protein

>TCONS_00026930-protein ID=TCONS_00026930-protein|Name=TCONS_00026930-protein|organism=Clytia hemisphaerica|type=polypeptide|length=403bp
MNSSIKELFIWSLNNGVQIRGLTIKDFPLSGRGVMTTRHINKNDLIIKIP
RRFLITFDTVLISMKWCIRDESNHGLTAKDLFLFFILVEKWKGKASKFRI
YIESIPETYTTPSCIPESKASLLPDFVSLERNKQRAKIAGHFKRLTHFLT
AYQSKMKEKRLNFDDVMWAWNVVNTRSVYLNPRNLTCSLDAFTKLSEVDF
ALAPLLDMLNHESGAQVEAKFNTKSNHYEIRTFDSYEPKEQVFINYGSHG
NRMLFFEYGFILPNNIHAVCPISRHLFLIHFPMNSQCQDSELLKIGISLE
KMNCTREGYFNWAFINAAHILFEQHSPDIRKLPSQCVGGRCKVYERVLNL
IHDLEKFYDNHLSKLRNEQNGALRQVFYLLENERNILYLTKEKWTTDCQI
MLS
Run BLAST on NCBI

transcript from alignment at sc0000596:175994..178224-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00026930 ID=TCONS_00026930|Name=TCONS_00026930|organism=Clytia hemisphaerica|type=transcript|length=2231bp|location=Sequence derived from alignment at sc0000596:175994..178224- (Clytia hemisphaerica)
TTTGTTTTCAATTTTGTTTTTCTTTCAGAGCTAGATAAAAAACATCAAGA
AATTTCTGATACAGGTGGAAAATCATGAATTCATCCATCAAAGAGCTTTT
TATTTGGTCATTAAACAACGGAGTTCAGATACGAGGTTTAACAATCAAAG
ATTTCCCTCTATCAGGGCGTGGAGTCATGACGACGCGCCATATAAATAAA
AATGATCTAATCATCAAAATTCCAAGACGCTTTTTAATCACTTTTGATAC
AGTATTGATATCAATGAAATGGTGCATCCGAGATGAATCGAACCATGGTT
TAACAGCCAAAGATTTATTTCTATTTTTCATCTTAGTGGAAAAATGGAAA
GGAAAAGCTTCTAAATTTCGTATTTACATTGAAAGTATCCCTGAGACATA
CACTACGCCGTCATGCATACCTGAATCTAAGGCTTCTCTTTTACCAGACT
TTGTGAGTTTAGAAAGGAACAAACAACGAGCAAAGATCGCAGGACATTTT
AAACGACTGACACATTTTTTAACCGCCTATCAAAGTAAAATGAAAGAAAA
GAGACTTAATTTTGATGATGTGATGTGGGCCTGGAATGTTGTGAACACTC
GTTCAGTGTATCTGAACCCACGTAACTTAACCTGTTCACTGGATGCATTT
ACGAAGTTATCGGAAGTTGATTTTGCATTGGCACCGCTTCTTGATATGTT
GAATCATGAGAGTGGAGCTCAGGTTAGTTATCATTAGATTAGTTTGATAT
AGTTAGAGAATTCTTTTTTTTTTGTTCCACCCAATACGTCAATTTTTCTA
TTGTTTAAGTGACGTATAGGCCATTTCACAGTCGAAATGGATCATGGGTA
ATCAGGACTGATTGCGCCTCCATTACGGCTTTCTGACANGTCGAAATGGA
TCATGGGTAATCAGGACTGATTGCGCCTCCATTACGGCTTTCTGTTGGCT
AGACGCAATAATCTTCAAAAAATTTCAAAACTCTGGACCAATAGTAAGTC
GTCATTAGCGCGCAGTGGTCCTGATTACCCATTACGCTTTGCGACCGTGA
AATGGCCTATTGGGTGGAAAATTTTAAAAGTTCTCAGAAGACTCTCCAGT
GGTGCATATCACGAATACATTTTGTACGTCAAACTATCTAAATATTATGA
TACTATGGTATGTTAGATTAAAAGACCCTTATAGTCACGTGATCGACGTG
GGTGATAGATAACCGGGAAGAAACTGATATGGTCTCCTCTGCGTTTCAAG
AGAAAAAATGAAATTAAATTTTATTTGATAATTTAAGTCTTTCCTAGTCA
AACCAACGAACATTCTGATTTTGAACGAAGATTGCCTCTTCTTTTACTAA
TGGAAATTCAGATCAATTCTTGAAAACGTTAAATAGCACTCAACCGGTAC
AAACATTGGATAGATAATACTGACTGGCCAAATGTTCTTTTTAATATATT
ACATTTCGTTTTCAGGTGGAAGCAAAATTTAACACCAAATCAAACCATTA
CGAAATTCGAACGTTCGATAGTTACGAACCGAAAGAACAAGTTTTTATCA
ATTACGGTAGTCATGGTAACCGAATGCTTTTTTTCGAATACGGGTTTATT
TTACCGAACAATATTCATGCGGTATGTCCTATATCAAGACATCTCTTTTT
GATACATTTTCCAATGAATAGTCAATGTCAAGATTCAGAACTTTTGAAAA
TTGGTATTTCTCTTGAGAAAATGAACTGCACGCGTGAAGGTTATTTTAAT
TGGGCTTTCATAAACGCCGCTCATATATTATTCGAACAACATTCGCCAGA
TATAAGGAAACTACCCAGCCAATGTGTGGGAGGTCGTTGTAAAGTTTATG
AGCGAGTTTTAAATCTCATCCATGATTTAGAGAAATTTTACGATAACCAT
TTGAGCAAACTACGAAATGAACAAAATGGTGCTTTGAGACAAGTGTTTTA
TCTACTGGAAAACGAACGCAATATTTTGTACTTGACAAAAGAAAAGTGGA
CAACCGATTGTCAAATTATGCTGAGTTGAGATTTCTTGCTACGAAAACTC
CAGAATGGGAAATGAAGTCACTTATTTCCCATCCTGGACACGTGACCCGT
GTGTTTTTCAAAAAAAAAATTTAAATGAGGGGTAAAGTTAACGCTTCACT
TTTTCTTGCTTGAGAAAGGTTGAAAATTCATCTCTAGTCCCTTCGCCCCA
CTCAATGGTTTGAACATTCTTAAGAAAAACN

Coding sequence (CDS) from alignment at sc0000596:175994..178224-

>TCONS_00026930 ID=TCONS_00026930|Name=TCONS_00026930|organism=Clytia hemisphaerica|type=CDS|length=2424bp|location=Sequence derived from alignment at sc0000596:175994..178224- (Clytia hemisphaerica)
GTGGAAGCAAAATTTAACACCAAATCAAACCATTACGAAATTCGAACGTT
CGATAGTTACGAACCGAAAGAACAAGTTTTTATCAATTACGGTAGTCATG
GTAACCGAATGCTTTTTTTCGAATACGGGTTTATTTTACCGAACAATATT
CATGCGGTATGTCCTATATCAAGACATCTCTTTTTGATACATTTTCCAAT
GAATAGTCAATGTCAAGATTCAGAACTTTTGAAAATTGGTATTTCTCTTG
AGAAAATGAACTGCACGCGTGAAGGTTATTTTAATTGGGCTTTCATAAAC
GCCGCTCATATATTATTCGAACAACATTCGCCAGATATAAGGAAACTACC
CAGCCAATGTGTGGGAGGTCGTTGTAAAGTTTATGAGCGAGTTTTAAATC
TCATCCATGATTTAGAGAAATTTTACGATAACCATTTGAGCAAACTACGA
AATGAACAAAATGGTGCTTTGAGACAAGTGTTTTATCTACTGGAAAACGA
ACGCAATATTTTGTACTTGACAAAAGAAAAGTGGACAACCGATTGTCAAA
TTATGCTGAGTTGAATGAATTCATCCATCAAAGAGCTTTTTATTTGGTCA
TTAAACAACGGAGTTCAGATACGAGGTTTAACAATCAAAGATTTCCCTCT
ATCAGGGCGTGGAGTCATGACGACGCGCCATATAAATAAAAATGATCTAA
TCATCAAAATTCCAAGACGCTTTTTAATCACTTTTGATACAGTATTGATA
TCAATGAAATGGTGCATCCGAGATGAATCGAACCATGGTTTAACAGCCAA
AGATTTATTTCTATTTTTCATCTTAGTGGAAAAATGGAAAGGAAAAGCTT
CTAAATTTCGTATTTACATTGAAAGTATCCCTGAGACATACACTACGCCG
TCATGCATACCTGAATCTAAGGCTTCTCTTTTACCAGACTTTGTGAGTTT
AGAAAGGAACAAACAACGAGCAAAGATCGCAGGACATTTTAAACGACTGA
CACATTTTTTAACCGCCTATCAAAGTAAAATGAAAGAAAAGAGACTTAAT
TTTGATGATGTGATGTGGGCCTGGAATGTTGTGAACACTCGTTCAGTGTA
TCTGAACCCACGTAACTTAACCTGTTCACTGGATGCATTTACGAAGTTAT
CGGAAGTTGATTTTGCATTGGCACCGCTTCTTGATATGTTGAATCATGAG
AGTGGAGCTCAGGTGGAAGCAAAATTTAACACCAAATCAAACCATTACGA
AATTCGAACGTTCGATAGTTACGAACCGAAAGAACAAGTTTTTATCAATT
ACGGTAGTCATGGTAACCGAATGCTTTTTTTCGAATACGGGTTTATTTTA
CCGAACAATATTCATGCGGTATGTCCTATATCAAGACATCTCTTTTTGAT
ACATTTTCCAATGAATAGTCAATGTCAAGATTCAGAACTTTTGAAAATTG
GTATTTCTCTTGAGAAAATGAACTGCACGCGTGAAGGTTATTTTAATTGG
GCTTTCATAAACGCCGCTCATATATTATTCGAACAACATTCGCCAGATAT
AAGGAAACTACCCAGCCAATGTGTGGGAGGTCGTTGTAAAGTTTATGAGC
GAGTTTTAAATCTCATCCATGATTTAGAGAAATTTTACGATAACCATTTG
AGCAAACTACGAAATGAACAAAATGGTGCTTTGAGACAAGTGTTTTATCT
ACTGGAAAACGAACGCAATATTTTGTACTTGACAAAAGAAAAGTGGACAA
CCGATTGTCAAATTATGCTGAGTTGAATGAATTCATCCATCAAAGAGCTT
TTTATTTGGTCATTAAACAACGGAGTTCAGATACGAGGTTTAACAATCAA
AGATTTCCCTCTATCAGGGCGTGGAGTCATGACGACGCGCCATATAAATA
AAAATGATCTAATCATCAAAATTCCAAGACGCTTTTTAATCACTTTTGAT
ACAGTATTGATATCAATGAAATGGTGCATCCGAGATGAATCGAACCATGG
TTTAACAGCCAAAGATTTATTTCTATTTTTCATCTTAGTGGAAAAATGGA
AAGGAAAAGCTTCTAAATTTCGTATTTACATTGAAAGTATCCCTGAGACA
TACACTACGCCGTCATGCATACCTGAATCTAAGGCTTCTCTTTTACCAGA
CTTTGTGAGTTTAGAAAGGAACAAACAACGAGCAAAGATCGCAGGACATT
TTAAACGACTGACACATTTTTTAACCGCCTATCAAAGTAAAATGAAAGAA
AAGAGACTTAATTTTGATGATGTGATGTGGGCCTGGAATGTTGTGAACAC
TCGTTCAGTGTATCTGAACCCACGTAACTTAACCTGTTCACTGGATGCAT
TTACGAAGTTATCGGAAGTTGATTTTGCATTGGCACCGCTTCTTGATATG
TTGAATCATGAGAGTGGAGCTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015121XLOC_015121Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026930-proteinTCONS_00026930-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026930-exon-sc0000596-1575043694:177503..178224TCONS_00026930-exon-sc0000596-1575043694:177503..178224Clytia hemisphaericaexon
TCONS_00026930-exon-sc0000596-1575043694:175994..176759TCONS_00026930-exon-sc0000596-1575043694:175994..176759Clytia hemisphaericaexon
TCONS_00026930-exon-sc0000596-1510915933:177503..178224TCONS_00026930-exon-sc0000596-1510915933:177503..178224Clytia hemisphaericaexon
TCONS_00026930-exon-sc0000596-1510915933:175994..176759TCONS_00026930-exon-sc0000596-1510915933:175994..176759Clytia hemisphaericaexon
TCONS_00026930-exon-sc0000596-1491911889:177503..178224TCONS_00026930-exon-sc0000596-1491911889:177503..178224Clytia hemisphaericaexon
TCONS_00026930-exon-sc0000596-1491911889:175994..176759TCONS_00026930-exon-sc0000596-1491911889:175994..176759Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000596supercontigsc0000596:175994..178224 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.27095	3.86322	1.13066	1.25981	3.77645	2.6406	3.86901	4.6229	2.29973	2.61705	3.28527	2.16852	2.34384	1.95661	3.68087	4.06225	4.28674	3.4755	3.21422	1.82049	3.01041	2.83006	18.3149	15.1128	2.1095	2.73546	3.17846	2.54974	14.1021	14.3027
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001214SET_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00026930 vs. Swiss-Prot (Human)
Match: SETD4 (SET domain-containing protein 4 OS=Homo sapiens GN=SETD4 PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 7.496e-45
Identity = 102/300 (34.00%), Postives = 151/300 (50.33%), Query Frame = 3 
Query:   75 MNSSIKELFI----WSLNNGVQIRGLTIKDFPLSGRGVMTTRHINKNDLIIKIPRRFLITFDTVLISMKWCIRDESNHGLTAKDLFLFFILVEKWKGKASKFRIYIESIPETYTTPSCIPESKASLLPDFVSLERNKQRAKIAGHFKRLTHFLTAYQSKMKEKR---LNFDDVMWAWNVVNTRSVYLNPRNLTCSLDAFTKLSEVD-FALAPLLDMLNHESGAQVEAKFNTKSNHYEIRTFDSYEPKEQVFINYGSHGNRMLFFEYGFILPNNIHAVCPISRHLFLIHFPMNSQCQDSEL 950
            +N S K  FI    W      Q   L    FP +GRG+M+   + +  +II +P   L+T DTV+ S       +     +       F++ EK  G  S ++ Y+E +P+ YT P C+     +LLP  +  +  +QRA +   F     F ++ Q    E      ++  ++WAW  VNTR+VYL PR   C L A     E D  ALAP LD+LNH    QV+A FN +++ YEIRT   +   E+VFI YG H N+ LF EYGF+  +N HA   +SR + + + P   +  D ++
Sbjct:   25 VNESHKSEFIELRKWLKARKFQDSNLAPACFPGTGRGLMSQTSLQEGQMIISLPESCLLTTDTVIRSYLGAYITKWKPPPSPLLALCTFLVSEKHAGHRSLWKPYLEILPKAYTCPVCLEPEVVNLLPKSLKAKAEEQRAHVQEFFASSRDFFSSLQPLFAEAVDSIFSYSALLWAWCTVNTRAVYLRPRQREC-LSA-----EPDTCALAPYLDLLNHSPHVQVKAAFNEETHSYEIRTTSRWRKHEEVFICYGPHDNQRLFLEYGFVSVHNPHACVYVSREILVKYLPSTDKQMDKKI 318
The following BLAST results are available for this feature:
BLAST of TCONS_00026930 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SETD47.496e-4534.00SET domain-containing protein 4 OS=Homo sapiens GN... [more]
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