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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026944 ID=TCONS_00026944|Name=TCONS_00026944|organism=Clytia hemisphaerica|type=transcript|length=2699bp
AAACATAGGCTGCTACACAAATCTCTATATACTTAAGCTTTTGAGAAAAT
CGTTTTATACATCTACTTTAAAGACAAGATTCGTACATAGTGAAGATATC
GATTGGCTCACGTCTAGAAATACAAGAACTTGTAACcatttcatgaattt
ttgctttacACCCTTTGAACCATGAATAGCTTGAACATTGGTTTATCATC
TGGTGCTCATCAGAGACGATCATTCTACTGGCCAACGACATCATTCCTCA
TCAGTGAACAACATAAGAAACATGCCCAACGAAGTCGTCGGAGAAGCAGG
TCTGCAAGCATGGAGGAACCGCAAAGCAAGAAATTGACAGGCTCACAACG
CGATATGTTTAGAAGATCCACAGGCTATTCACTAGACTCTTGCATGAAAC
AAAATGATGTCCATGTAGTTGAGTTTCGGAAGAAACGGCGATCACACTCT
TGTACAGATGAAAGAAATCTTCCTACGGTGAATTCTAATTGCTCGAATAC
AAGAAAGAGTAGATATTTGGGAGTTCCTTCTGTCACATACGGAAACAAAC
TACCTAACGAGTTTTCAGAAAGAAACCTTCATCTTCCAGGCAACAGAGTA
CGAAGCAAATCACATGAGCCTCAAACTCTATTGACATCTAACCTCGTACA
AGTTCCAGTAATGGTACACACACGTCGTGAATTTGTTGACAGAATNATTT
GCAATATCATATATATCCTGAGATAGATTAAACATAGGCTGCTACACAAA
TCTCTATATACTTAAGCTTTTGAGAAAATCGTTTTATACATCTACTTTAA
AGACAAGATTCGTACATAGTGAAGATATCGATTGGCTCACGTCTAGAAAT
ACAAGAACTTGTAACcatttcatgaatttttgctttacACCCTTTGAACC
ATGAATAGCTTGAACATTGGTTTATCATCTGGTGCTCATCAGAGACGATC
ATTCTACTGGCCAACGACATCATTCCTCATCAGTGAACAACATAAGAAAC
ATGCCCAACGAAGTCGTCGGAGAAGCAGGTCTGCAAGCATGGAGGAACCG
CAAAGCAAGAAATTGACAGGCTCACAACGCGATATGTTTAGAAGATCCAC
AGGCTATTCACTAGACTCTTGCATGAAACAAAATGATGTCCATGTAGTTG
AGTTTCGGAAGAAACGGCGATCACACTCTTGTACAGATGAAAGAAATCTT
CCTACGGTGAATTCTAATTGCTCGAATACAAGAAAGAGTAGATATTTGGG
AGTTCCTTCTGTCACATACGGAAACAAACTACCTAACGAGTTTTCAGAAA
GAAACCTTCATCTTCCAGGCAACAGAGTACGAAGCAAATCACATGAGCCT
CAAACTCTATTGACATCTAACCTCGTACAAGTTCCAGTAATGGTACACAC
ACGTCGTGAATTTGTTGACAGAATAAAACGGCAGAGGAGTAAATCATATG
AAACAACAGAAACTAAAAGCGACAAGTGTAGATATTCAGATCGCTTACGA
AGCAAGTCAGCTACGGATGGAGATGAAACAACTATCGACAATAATTGTGa
cttgaaattatttaaaacagtTGAAAACAAAGATTCGACAGATTTCTCTA
TAGAGACAAGAGATGCTCATAATGGAAATCTTCGAAGGCTAAGTAACTCT
AAAGTATCATTCGACGTGAGTGGAAACTCGCTTTGTAATGAAAAACCTGA
AACAAGTGAAAACGAAATTGAAGCAAAATTATCCTCGAACCAAATGGTCG
GACCATCACCTTTAACCAAACAATCTGCCGTCAATATTGATATTATATGC
AGCAAAGAAGTCGACTCGAATCCGGAAGCTCTCATCCAGGATGAAAACGA
TGAAAATCAATCTGATCTTTCCAAAACTGATAGTAAAACACTCAATGAGA
CAAAAGTGTTACCCTCTTCACCGAAAGAAAGCCAACAACTAAACAAGAAA
GACAATGTTATCAAAGCAAGAAGTTCACAATTAACAAACTCTGTGCAGAA
TTTATTTTCCTGCTTTTCCCACCTTACAGTAAAACAcaaatcgaaacaaa
aaagacaaattCGTTTTTGATTCATGAAACTATGATTGAAGAATACACCC
CGTGTCGCCAGctccactgagaaattgactttgatttcatccccaatcga
aattcattgtttagaaattgcactccaaaaccatccccactgggtttttt
aaccttgaaacagaatttttatccccattgagattttaaccgaaattttt
atccccgctggaGGAAAAAGTTTcgccggggctgtgagacaggggtgtaa
gaatAAGAGCATAAGTGGAAAGTGGTGATGGACTCAGTCACCTATAAGGG
ATCTACGTTTTAGAATATGTAAATTAAATTCGTATCTTGAATGGTGTTAA
AAAAATGATTACGTATACGTTAAATAATCTAATACTTCGTTGGTGAAAAC
AACTTCCtaatatttttaccaaaaataacAAAGTAACAAAGTGGAAGACA
CGATCTTTTCCCCGCAGATATTGCATTGTTTTTAGAAGATCGTTATTGTT
TTGTTGCTAACAGATTAGGATTTTCCGGAATTTTCTCTATGACTATTTTA
AACTATTGGATAATTCAATGTTTCGAAATACTTTCCAATGTATGCATGTA
ATATTTATTAATCTTTAATTTCATTAATACAATTGATATCTTGTAAAAG Run BLAST on NCBI protein sequence of TCONS_00026944-protein >TCONS_00026944-protein ID=TCONS_00026944-protein|Name=TCONS_00026944-protein|organism=Clytia hemisphaerica|type=polypeptide|length=389bp
MNSLNIGLSSGAHQRRSFYWPTTSFLISEQHKKHAQRSRRRSRSASMEEP
QSKKLTGSQRDMFRRSTGYSLDSCMKQNDVHVVEFRKKRRSHSCTDERNL
PTVNSNCSNTRKSRYLGVPSVTYGNKLPNEFSERNLHLPGNRVRSKSHEP
QTLLTSNLVQVPVMVHTRREFVDRIKRQRSKSYETTETKSDKCRYSDRLR
SKSATDGDETTIDNNCDLKLFKTVENKDSTDFSIETRDAHNGNLRRLSNS
KVSFDVSGNSLCNEKPETSENEIEAKLSSNQMVGPSPLTKQSAVNIDIIC
SKEVDSNPEALIQDENDENQSDLSKTDSKTLNETKVLPSSPKESQQLNKK
DNVIKARSSQLTNSVQNLFSCFSHLTVKHKSKQKRQIRF Run BLAST on NCBI transcript from alignment at sc0000596:30867..33565 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00026944 ID=TCONS_00026944|Name=TCONS_00026944|organism=Clytia hemisphaerica|type=transcript|length=2699bp|location=Sequence derived from alignment at sc0000596:30867..33565 (Clytia hemisphaerica)
CTTTTACAAGATATCAATTGTATTAATGAAATTAAAGATTAATAAATATT
ACATGCATACATTGGAAAGTATTTCGAAACATTGAATTATCCAATAGTTT
AAAATAGTCATAGAGAAAATTCCGGAAAATCCTAATCTGTTAGCAACAAA
ACAATAACGATCTTCTAAAAACAATGCAATATCTGCGGGGAAAAGATCGT
GTCTTCCACTTTGTTACTTTgttatttttggtaaaaatattaGGAAGTTG
TTTTCACCAACGAAGTATTAGATTATTTAACGTATACGTAATCATTTTTT
TAACACCATTCAAGATACGAATTTAATTTACATATTCTAAAACGTAGATC
CCTTATAGGTGACTGAGTCCATCACCACTTTCCACTTATGCTCTTattct
tacacccctgtctcacagccccggcgAAACTTTTTCCtccagcggggata
aaaatttcggttaaaatctcaatggggataaaaattctgtttcaaggtta
aaaaacccagtggggatggttttggagtgcaatttctaaacaatgaattt
cgattggggatgaaatcaaagtcaatttctcagtggagCTGGCGACACGG
GGTGTATTCTTCAATCATAGTTTCATGAATCAAAAACGaatttgtctttt
ttgtttcgatttgTGTTTTACTGTAAGGTGGGAAAAGCAGGAAAATAAAT
TCTGCACAGAGTTTGTTAATTGTGAACTTCTTGCTTTGATAACATTGTCT
TTCTTGTTTAGTTGTTGGCTTTCTTTCGGTGAAGAGGGTAACACTTTTGT
CTCATTGAGTGTTTTACTATCAGTTTTGGAAAGATCAGATTGATTTTCAT
CGTTTTCATCCTGGATGAGAGCTTCCGGATTCGAGTCGACTTCTTTGCTG
CATATAATATCAATATTGACGGCAGATTGTTTGGTTAAAGGTGATGGTCC
GACCATTTGGTTCGAGGATAATTTTGCTTCAATTTCGTTTTCACTTGTTT
CAGGTTTTTCATTACAAAGCGAGTTTCCACTCACGTCGAATGATACTTTA
GAGTTACTTAGCCTTCGAAGATTTCCATTATGAGCATCTCTTGTCTCTAT
AGAGAAATCTGTCGAATCTTTGTTTTCAactgttttaaataatttcaagt
CACAATTATTGTCGATAGTTGTTTCATCTCCATCCGTAGCTGACTTGCTT
CGTAAGCGATCTGAATATCTACACTTGTCGCTTTTAGTTTCTGTTGTTTC
ATATGATTTACTCCTCTGCCGTTTTATTCTGTCAACAAATTCACGACGTG
TGTGTACCATTACTGGAACTTGTACGAGGTTAGATGTCAATAGAGTTTGA
GGCTCATGTGATTTGCTTCGTACTCTGTTGCCTGGAAGATGAAGGTTTCT
TTCTGAAAACTCGTTAGGTAGTTTGTTTCCGTATGTGACAGAAGGAACTC
CCAAATATCTACTCTTTCTTGTATTCGAGCAATTAGAATTCACCGTAGGA
AGATTTCTTTCATCTGTACAAGAGTGTGATCGCCGTTTCTTCCGAAACTC
AACTACATGGACATCATTTTGTTTCATGCAAGAGTCTAGTGAATAGCCTG
TGGATCTTCTAAACATATCGCGTTGTGAGCCTGTCAATTTCTTGCTTTGC
GGTTCCTCCATGCTTGCAGACCTGCTTCTCCGACGACTTCGTTGGGCATG
TTTCTTATGTTGTTCACTGATGAGGAATGATGTCGTTGGCCAGTAGAATG
ATCGTCTCTGATGAGCACCAGATGATAAACCAATGTTCAAGCTATTCATG
GTTCAAAGGGTgtaaagcaaaaattcatgaaatgGTTACAAGTTCTTGTA
TTTCTAGACGTGAGCCAATCGATATCTTCACTATGTACGAATCTTGTCTT
TAAAGTAGATGTATAAAACGATTTTCTCAAAAGCTTAAGTATATAGAGAT
TTGTGTAGCAGCCTATGTTTAATCTATCTCAGGATATATATGATATTGCA
AATNATTCTGTCAACAAATTCACGACGTGTGTGTACCATTACTGGAACTT
GTACGAGGTTAGATGTCAATAGAGTTTGAGGCTCATGTGATTTGCTTCGT
ACTCTGTTGCCTGGAAGATGAAGGTTTCTTTCTGAAAACTCGTTAGGTAG
TTTGTTTCCGTATGTGACAGAAGGAACTCCCAAATATCTACTCTTTCTTG
TATTCGAGCAATTAGAATTCACCGTAGGAAGATTTCTTTCATCTGTACAA
GAGTGTGATCGCCGTTTCTTCCGAAACTCAACTACATGGACATCATTTTG
TTTCATGCAAGAGTCTAGTGAATAGCCTGTGGATCTTCTAAACATATCGC
GTTGTGAGCCTGTCAATTTCTTGCTTTGCGGTTCCTCCATGCTTGCAGAC
CTGCTTCTCCGACGACTTCGTTGGGCATGTTTCTTATGTTGTTCACTGAT
GAGGAATGATGTCGTTGGCCAGTAGAATGATCGTCTCTGATGAGCACCAG
ATGATAAACCAATGTTCAAGCTATTCATGGTTCAAAGGGTgtaaagcaaa
aattcatgaaatgGTTACAAGTTCTTGTATTTCTAGACGTGAGCCAATCG
ATATCTTCACTATGTACGAATCTTGTCTTTAAAGTAGATGTATAAAACGA
TTTTCTCAAAAGCTTAAGTATATAGAGATTTGTGTAGCAGCCTATGTTT Coding sequence (CDS) from alignment at sc0000596:30867..33565 >TCONS_00026944 ID=TCONS_00026944|Name=TCONS_00026944|organism=Clytia hemisphaerica|type=CDS|length=1170bp|location=Sequence derived from alignment at sc0000596:30867..33565 (Clytia hemisphaerica)
TCAAAAACGaatttgtcttttttgtttcgatttgTGTTTTACTGTAAGGT
GGGAAAAGCAGGAAAATAAATTCTGCACAGAGTTTGTTAATTGTGAACTT
CTTGCTTTGATAACATTGTCTTTCTTGTTTAGTTGTTGGCTTTCTTTCGG
TGAAGAGGGTAACACTTTTGTCTCATTGAGTGTTTTACTATCAGTTTTGG
AAAGATCAGATTGATTTTCATCGTTTTCATCCTGGATGAGAGCTTCCGGA
TTCGAGTCGACTTCTTTGCTGCATATAATATCAATATTGACGGCAGATTG
TTTGGTTAAAGGTGATGGTCCGACCATTTGGTTCGAGGATAATTTTGCTT
CAATTTCGTTTTCACTTGTTTCAGGTTTTTCATTACAAAGCGAGTTTCCA
CTCACGTCGAATGATACTTTAGAGTTACTTAGCCTTCGAAGATTTCCATT
ATGAGCATCTCTTGTCTCTATAGAGAAATCTGTCGAATCTTTGTTTTCAa
ctgttttaaataatttcaagtCACAATTATTGTCGATAGTTGTTTCATCT
CCATCCGTAGCTGACTTGCTTCGTAAGCGATCTGAATATCTACACTTGTC
GCTTTTAGTTTCTGTTGTTTCATATGATTTACTCCTCTGCCGTTTTATTC
TGTCAACAAATTCACGACGTGTGTGTACCATTACTGGAACTTGTACGAGG
TTAGATGTCAATAGAGTTTGAGGCTCATGTGATTTGCTTCGTACTCTGTT
GCCTGGAAGATGAAGGTTTCTTTCTGAAAACTCGTTAGGTAGTTTGTTTC
CGTATGTGACAGAAGGAACTCCCAAATATCTACTCTTTCTTGTATTCGAG
CAATTAGAATTCACCGTAGGAAGATTTCTTTCATCTGTACAAGAGTGTGA
TCGCCGTTTCTTCCGAAACTCAACTACATGGACATCATTTTGTTTCATGC
AAGAGTCTAGTGAATAGCCTGTGGATCTTCTAAACATATCGCGTTGTGAG
CCTGTCAATTTCTTGCTTTGCGGTTCCTCCATGCTTGCAGACCTGCTTCT
CCGACGACTTCGTTGGGCATGTTTCTTATGTTGTTCACTGATGAGGAATG
ATGTCGTTGGCCAGTAGAATGATCGTCTCTGATGAGCACCAGATGATAAA
CCAATGTTCAAGCTATTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00026944-exon-sc0000596-1491911889:30867..33565 | TCONS_00026944-exon-sc0000596-1491911889:30867..33565 | Clytia hemisphaerica | exon |
| TCONS_00026944-exon-sc0000596-1510915933:30867..33565 | TCONS_00026944-exon-sc0000596-1510915933:30867..33565 | Clytia hemisphaerica | exon |
| TCONS_00026944-exon-sc0000596-1575043694:30867..33565 | TCONS_00026944-exon-sc0000596-1575043694:30867..33565 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| sc0000596 | supercontig | sc0000596:30867..33565 . |
Blast
The following BLAST results are available for this feature:
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