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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026946 ID=TCONS_00026946|Name=TCONS_00026946|organism=Clytia hemisphaerica|type=transcript|length=1832bp
CAGCACAATTTCAACAAAAGAGATTTTTATCGTCATCAAAATTATCATCT
TCACTGACTTCCATATCAATGTCACTTTCCTCATCGTCACTCTCATCACT
TTCATACTCACATTCATCATTATCGTCCTCGTAATCAATTTCATATTCTT
CTGCTGGTTCCTCATTTGATTGAAAGTTGTCACATTCATGGTTGGTGCAA
GCATCTGTACATTTGAGGGAGTTATCCACACAAGGGCACGATCCACGGAC
ACACTTCTTTAAACACGTGCAAAACATCATTTCCAGAACTTCATCTGGAG
CCGGGTTCACCTTATTCCACGAAATAGTGAGATCACCTTCGTCATTCTGG
TCCCAAACAAAATCAACAGGCGATGGGATGATATGGGATGATAGGGTGAC
TTTGCAACAAGTTTCTCCATATGTAAACTTGATAGCAAGCACGTAGACTG
TGTTGCCTTAGGCTGTCAGCGCATGATGGGAACATTTTGGGGTCGAGATG
GCCATGTTTTGCAGCGTACATTTTGTAACGAATGTTGTTTGTGTTCGTGT
CTTTGTGGCCATACATATCGCAAACAAAACTTTGGATGGTATTGAACTGT
GCTTTGGTTAACTCTGGTGCATCTCCAAAAGTAGCAAATAGGTTGATGTA
TTGATCGTCTTTCATCATCGTTTTTAAAGGTTTCACTTTGCCCTTGCCAG
CAAAGGAACTGATCGTATCGCACCCAGTAAATCCATGAAGACCTAGGAGT
GCTCTCGAAACCCTTTCTACATCTTTGACGGCGTATCTTGTCTTAAGAGA
TTCCTTGATATCTTTTAGACTGATTATCCTGGTTTTACTTTTGACGCCAG
TTTTCATGTGAATTTCAGCTCCAATTTCAGTTGCAAGACCAAGAGCGATT
AATAGAACATCAGTATTAGGTGTATGGATGACTATCTTCTTGAAAGATCT
TGATATTTGTTTCGTGTGAAAGACCAGGCGCGTGTCTGCCTCCTCGTGGT
TGCAAGCTAATGTTCGGGCTTCAGTACCACCGAGTTTAACACAGATTTCT
TCATATGCCACATAAACTTGAGTCTAACCAATGCAAGTGTGTTTCTTTTG
CCATCTCTAAGCAAGAAACCGAATGAGGGTCATCTTATTTGCTCCGTTTG
AGAGAAGTGACGAGAATTGCTTCACCTTTTGACCACCAATGATCCTCTTC
ACCTCTAGTTTACCAGACTCACGGTTTACTTGTTCTGCATTTTAAATGCA
TTTGCCGATGTTGCGATTGCGGTTGTTAATAAATGGTCGGCGTAGCTGTC
ATAGGTGTGTCCAGTTGGTTTAGTCGTCCTCACCAATGCCATACCATGGA
TAACTGCAGCAaacggttttttgacattttgttgAAGAGAGACGTCTTTT
TCCAAATGACGCATCAGTGATgactttgttgttttgtttagtGCTCCGCT
ACTCTCAGCCAAGGACCATGGAACGGGACCAAGAGCAAAACAGAAAACCT
CTCTAAGATTGAGGGTGCGAAACTGTTGCAGACTTCTGTTGTTGGTGCAA
CACCTGATGTAATGCTTATCAAATCCACCTCATCGAAAGGATTCACAAAC
ATGGAGTCGATCGTGTCTTTGACAGTCTTGACATCCTTTTGGTCACGTCT
AATTCGTGCAGGACTTAAATCGGGATGCTTCGAATTCTTTGACATAGAGA
GAAATTCTTGCATGTGTTTGCGGACTTCGGCTCTGTACGCTGCGGTAAGT
ACCCATCTTTGAACGGCTCCGTGGTTTGTGCTGAACCCTTAAATGAAATA
ACAAAAGCTAAAGTAGTAAAATTAAAATCACA Run BLAST on NCBI protein sequence of TCONS_00026946-protein >TCONS_00026946-protein ID=TCONS_00026946-protein|Name=TCONS_00026946-protein|organism=Clytia hemisphaerica|type=polypeptide|length=164bp
MKTGVKSKTRIISLKDIKESLKTRYAVKDVERVSRALLGLHGFTGCDTIS
SFAGKGKVKPLKTMMKDDQYINLFATFGDAPELTKAQFNTIQSFVCDMYG
HKDTNTNNIRYKMYAAKHGHLDPKMFPSCADSLRQHSLRACYQVYIWRNL
LQSHPIIPYHPIAC Run BLAST on NCBI transcript from alignment at sc0000596:45532..47363 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00026946 ID=TCONS_00026946|Name=TCONS_00026946|organism=Clytia hemisphaerica|type=transcript|length=1832bp|location=Sequence derived from alignment at sc0000596:45532..47363 (Clytia hemisphaerica)
TGTGATTTTAATTTTACTACTTTAGCTTTTGTTATTTCATTTAAGGGTTC
AGCACAAACCACGGAGCCGTTCAAAGATGGGTACTTACCGCAGCGTACAG
AGCCGAAGTCCGCAAACACATGCAAGAATTTCTCTCTATGTCAAAGAATT
CGAAGCATCCCGATTTAAGTCCTGCACGAATTAGACGTGACCAAAAGGAT
GTCAAGACTGTCAAAGACACGATCGACTCCATGTTTGTGAATCCTTTCGA
TGAGGTGGATTTGATAAGCATTACATCAGGTGTTGCACCAACAACAGAAG
TCTGCAACAGTTTCGCACCCTCAATCTTAGAGAGGTTTTCTGTTTTGCTC
TTGGTCCCGTTCCATGGTCCTTGGCTGAGAGTAGCGGAGCactaaacaaa
acaacaaagtcATCACTGATGCGTCATTTGGAAAAAGACGTCTCTCTTca
acaaaatgtcaaaaaaccgttTGCTGCAGTTATCCATGGTATGGCATTGG
TGAGGACGACTAAACCAACTGGACACACCTATGACAGCTACGCCGACCAT
TTATTAACAACCGCAATCGCAACATCGGCAAATGCATTTAAAATGCAGAA
CAAGTAAACCGTGAGTCTGGTAAACTAGAGGTGAAGAGGATCATTGGTGG
TCAAAAGGTGAAGCAATTCTCGTCACTTCTCTCAAACGGAGCAAATAAGA
TGACCCTCATTCGGTTTCTTGCTTAGAGATGGCAAAAGAAACACACTTGC
ATTGGTTAGACTCAAGTTTATGTGGCATATGAAGAAATCTGTGTTAAACT
CGGTGGTACTGAAGCCCGAACATTAGCTTGCAACCACGAGGAGGCAGACA
CGCGCCTGGTCTTTCACACGAAACAAATATCAAGATCTTTCAAGAAGATA
GTCATCCATACACCTAATACTGATGTTCTATTAATCGCTCTTGGTCTTGC
AACTGAAATTGGAGCTGAAATTCACATGAAAACTGGCGTCAAAAGTAAAA
CCAGGATAATCAGTCTAAAAGATATCAAGGAATCTCTTAAGACAAGATAC
GCCGTCAAAGATGTAGAAAGGGTTTCGAGAGCACTCCTAGGTCTTCATGG
ATTTACTGGGTGCGATACGATCAGTTCCTTTGCTGGCAAGGGCAAAGTGA
AACCTTTAAAAACGATGATGAAAGACGATCAATACATCAACCTATTTGCT
ACTTTTGGAGATGCACCAGAGTTAACCAAAGCACAGTTCAATACCATCCA
AAGTTTTGTTTGCGATATGTATGGCCACAAAGACACGAACACAAACAACA
TTCGTTACAAAATGTACGCTGCAAAACATGGCCATCTCGACCCCAAAATG
TTCCCATCATGCGCTGACAGCCTAAGGCAACACAGTCTACGTGCTTGCTA
TCAAGTTTACATATGGAGAAACTTGTTGCAAAGTCACCCTATCATCCCAT
ATCATCCCATCGCCTGTTGATTTTGTTTGGGACCAGAATGACGAAGGTGA
TCTCACTATTTCGTGGAATAAGGTGAACCCGGCTCCAGATGAAGTTCTGG
AAATGATGTTTTGCACGTGTTTAAAGAAGTGTGTCCGTGGATCGTGCCCT
TGTGTGGATAACTCCCTCAAATGTACAGATGCTTGCACCAACCATGAATG
TGACAACTTTCAATCAAATGAGGAACCAGCAGAAGAATATGAAATTGATT
ACGAGGACGATAATGATGAATGTGAGTATGAAAGTGATGAGAGTGACGAT
GAGGAAAGTGACATTGATATGGAAGTCAGTGAAGATGATAATTTTGATGA
CGATAAAAATCTCTTTTGTTGAAATTGTGCTG Coding sequence (CDS) from alignment at sc0000596:45532..47363 >TCONS_00026946 ID=TCONS_00026946|Name=TCONS_00026946|organism=Clytia hemisphaerica|type=CDS|length=495bp|location=Sequence derived from alignment at sc0000596:45532..47363 (Clytia hemisphaerica)
ATGAAAACTGGCGTCAAAAGTAAAACCAGGATAATCAGTCTAAAAGATAT
CAAGGAATCTCTTAAGACAAGATACGCCGTCAAAGATGTAGAAAGGGTTT
CGAGAGCACTCCTAGGTCTTCATGGATTTACTGGGTGCGATACGATCAGT
TCCTTTGCTGGCAAGGGCAAAGTGAAACCTTTAAAAACGATGATGAAAGA
CGATCAATACATCAACCTATTTGCTACTTTTGGAGATGCACCAGAGTTAA
CCAAAGCACAGTTCAATACCATCCAAAGTTTTGTTTGCGATATGTATGGC
CACAAAGACACGAACACAAACAACATTCGTTACAAAATGTACGCTGCAAA
ACATGGCCATCTCGACCCCAAAATGTTCCCATCATGCGCTGACAGCCTAA
GGCAACACAGTCTACGTGCTTGCTATCAAGTTTACATATGGAGAAACTTG
TTGCAAAGTCACCCTATCATCCCATATCATCCCATCGCCTGTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00026946-exon-sc0000596-1491911889:45532..47363 | TCONS_00026946-exon-sc0000596-1491911889:45532..47363 | Clytia hemisphaerica | exon |
| TCONS_00026946-exon-sc0000596-1510915933:45532..47363 | TCONS_00026946-exon-sc0000596-1510915933:45532..47363 | Clytia hemisphaerica | exon |
| TCONS_00026946-exon-sc0000596-1575043694:45532..47363 | TCONS_00026946-exon-sc0000596-1575043694:45532..47363 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000596 | supercontig | sc0000596:45532..47363 . |
Blast
The following BLAST results are available for this feature:
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