TCONS_00026954 (transcript) - C. hemisphaerica

Overview
NameTCONS_00026954
Unique NameTCONS_00026954
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length785

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00026954 ID=TCONS_00026954|Name=TCONS_00026954|organism=Clytia hemisphaerica|type=transcript|length=785bp
tgttttgttaGATGGACAGAGTTTTTTATATATTCAACATGAATTTGTGG
CTAACAAAAATATCTCTAGCTAAATAATGCCATTAgctcaataaaaaaat
atgaaaaataagaTCTATTAATTAGGAGCTGAACAATGGCTGTAGTTGTA
ATTTGATGATATATTTGAAATTCAACTAAAAGGAAGAATAAGTTAAGTTT
GAGTATATTCAGAAGtaaatttttgtaagaaaaaaaacacgatcatttgt
tttaacttttataaagtctttaagcagcTGTTGTGAGAGCAAATTCATCC
GTACATAATCCATAATTTTACACCGTTGACTGTCTATAAAATATGGTTTT
TTCAACGGATAGCCCGATTCACGAAATCTTGATGATTATACACAACACAG
TCTAAGATTTAGTTTATATTCAAAAATTGCCCAAGCATTGTATATAACAG
CATCGTATCATATCATGAACCCATCGGTTGATCTTTGACGAACAGGTGAC
AGGTTCAAAATCAGGAGTATTCAAACAAAAATGTGTCCTACAAAATTTGT
CTGTGTTGCCACTTGTAGCataattctatcaaaagaaTAGTATACATCCa
atattcaaatttcctttGAGAGTAATTTGTCTGCCATTAAAAGCACTTCC
TCTTTTGTTACTACAAACCAGATAACATCAACCATCAACAAGGCCATCAA
ATAAATAACAGCTTGTTTTCTCTCTACCATGCTTGCTAATTCAGCTAAAT
TCATTCATtctgtcatttgttttttttttctaaaa
Run BLAST on NCBI

transcript from alignment at sc0000596:210582..211366

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00026954 ID=TCONS_00026954|Name=TCONS_00026954|organism=Clytia hemisphaerica|type=transcript|length=785bp|location=Sequence derived from alignment at sc0000596:210582..211366 (Clytia hemisphaerica)
ttttagaaaaaaaaaacaaatgacagaATGAATGAATTTAGCTGAATTAG
CAAGCATGGTAGAGAGAAAACAAGCTGTTATTTATTTGATGGCCTTGTTG
ATGGTTGATGTTATCTGGTTTGTAGTAACAAAAGAGGAAGTGCTTTTAAT
GGCAGACAAATTACTCTCaaaggaaatttgaatattGGATGTATACTAtt
cttttgatagaattatGCTACAAGTGGCAACACAGACAAATTTTGTAGGA
CACATTTTTGTTTGAATACTCCTGATTTTGAACCTGTCACCTGTTCGTCA
AAGATCAACCGATGGGTTCATGATATGATACGATGCTGTTATATACAATG
CTTGGGCAATTTTTGAATATAAACTAAATCTTAGACTGTGTTGTGTATAA
TCATCAAGATTTCGTGAATCGGGCTATCCGTTGAAAAAACCATATTTTAT
AGACAGTCAACGGTGTAAAATTATGGATTATGTACGGATGAATTTGCTCT
CACAACAgctgcttaaagactttataaaagttaaaacaaatgatcgtgtt
ttttttcttacaaaaatttaCTTCTGAATATACTCAAACTTAACTTATTC
TTCCTTTTAGTTGAATTTCAAATATATCATCAAATTACAACTACAGCCAT
TGTTCAGCTCCTAATTAATAGAtcttatttttcatatttttttattgagc
TAATGGCATTATTTAGCTAGAGATATTTTTGTTAGCCACAAATTCATGTT
GAATATATAAAAAACTCTGTCCATCtaacaaaaca
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015133XLOC_015133Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026954-exon-sc0000596-1491911889:210582..211366TCONS_00026954-exon-sc0000596-1491911889:210582..211366Clytia hemisphaericaexon
TCONS_00026954-exon-sc0000596-1510915933:210582..211366TCONS_00026954-exon-sc0000596-1510915933:210582..211366Clytia hemisphaericaexon
TCONS_00026954-exon-sc0000596-1575043694:210582..211366TCONS_00026954-exon-sc0000596-1575043694:210582..211366Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000596supercontigsc0000596:210582..211366 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.22701	1.24682	0.696265	0.527385	4.51366	4.01636	5.61341	4.24141	2.36419	1.40985	1.21735	1.65958	1.64189	1.41678	2.4298	3.2577	4.03015	4.10345	4.28806	3.23585	7.21179	5.212	4.46017	5.25182	0.786667	1.08357	2.08075	1.57263	1.67593	1.94016
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00026954 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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