TCONS_00026976 (transcript) - C. hemisphaerica

Overview
NameTCONS_00026976
Unique NameTCONS_00026976
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2721

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00026976 ID=TCONS_00026976|Name=TCONS_00026976|organism=Clytia hemisphaerica|type=transcript|length=2721bp
ttgccgTCATTTTCGATgagcaaaatatgaaaaagaaaacaaaaaatgga
cgacaagaaaatatttacaaaaataaacacgttcgtaaaacgctaaagtt
cttataataaaaaagacgcttttttagtgaaaaagcgtatggttttgaaa
agttcaaatactCCTGTATCATCTTGGAGGAGAGTTAAAGTATTACCTGC
GAGTGgagctctaattttttcttgCGAAAGATCGTTCGCGCACTGGTTCC
TCGTTTGCGGACTGGGTTCGCATAGCGCTCGCTTTAACgacttattattc
caagaaagagctttcaaataaagtgaaaacaaagtgaaagaaggacttca
agctCATCTACGAGATGGTCtaaaaggatttatgtaaaaaccaaaagtaa
gtgagaaaagtgaaaaatgagttTGGCCTTCGTGCATTGGGCACCCCCTC
tactaatcgataaattcgattatcgaagtAAACGATAATGCTCGAAGTAA
TCGAACGACCACTTATCGGTTAACAATCGAACAACCacttatcgattaac
aatcgaatgtcgagtaccaaaatttcaaaaatattgtgagtatttgatca
ctttcttaacaacccttcgaAGACTCAATAACCGttcgagtactttgatt
gttattgattactttcgataactttgacagctttgataaccaattgatta
cttcgataacTAATTACTATGATTAtcttgaagaaaaaacaaaaaaaatg
acctaaaaccaaagcacaaaaagaagcccCCCCTTATTCCCCAGCCATTT
CGCCCGCCGTTTTGTGTGTCTTCGCCCTGGGTTTCCTCTATTACCTCATA
TCGcgcgttttgattggtcagagaaaacgaaagtggttttggCGCGTTCT
GATTGTTTGGAGAAAACAAAAGTAGTTTTTGCAcgtgaataaaataaaat
tggtttcagattattttgaggcgctgctactggaaacatattttgcgtgT
GTGTGTGTGTATCGAAGGCTGGAAGGTACTCAATACAATCGAAAAGTAat
cgaaatgattgaacaaatcgaaaatggttgaagaaaatgccataatctgG
AGTCGAGTAAGTATTCTAACACCGATAAAATCGATAGGTGGTCACTGACC
accttcgattattatcgatcattattgattacttcgatcacaatcGAACA
TTCAATTAGTACCGTCTGGCTAAGAGTAAAGGTCTATGCACCTCAAATAT
GCTATAAACAAATGCAAAAgatctttgtttttattgagtTGCTTCTAAGG
CAAACATGAAATTGATATGATCAGAAAGTTAATTCAATGTTTTATTCAAT
CTCATTTGTAAATTTTGTGGTTTTGCTCTGGGAGATTATTCCAAAACCTT
GGGAATATTAGGTATTTGTATGTGTATGTGATGGCACTATGTCGAGGCCG
AAATATTCAGAataaagatcattgtaaaaacaCATCCTTTTAAAAACCTT
GGATGGGATTAATTTAATTAAGTAAGGGTTTCAGTCATTTAgattaaagc
ccaaagggctagagtagaatctctaagcttttccaggcaagaaaaagtga
aaccacttatttcccatccataACGCGACTAGAACGCGctgcaatcatga
cgacggattttATCTAgtagttcctttgtttttgaagactgCAATTCTTG
AAATCTAGCAATAGATTTaactttcaatctggcgtttgtgtaaaaaccac
acGCGGATGTTCTGGGCgaaaaataagtggcttcatttcccatccaggag
tctcgagtctagcccttcaggcttggAAGTAAGGGTTTAAATCCCCctct
tttcatttatttttgattaattaatttttaacactgaataaagaaagaag
aaaacgaTGTTACATGTAGTAAAAAAATTCGTTTTCAAGTACGCTTGTCA
ACCATTATTTTATGTTTGGATTACTCATGCAAGCTATGTCACAATCAAGA
TTACATATCTTTCACTGATGGCTTCGGTTAGGGGTATATCTGGCAGGAAG
GAGATAAAACAACAAACAGGACCTAAATCAACAGTGTTGTTTTTCCCTGA
TAAAAAGCAGTTATGTGGATCACTTGTGCAACAATCCAAGAAATGTCCAG
GATTAGAGACTTGTTTGTTTGGACATAAAGAAACATCACTTTGGAAACTG
ATTGATACACTTGAGTCAAGTCAATTTAAACTTGATGTTTGTGTTTTCGT
AATAACTTCACAAGATTTAGCAGACATTCTGATTAAGAAACACAAAGAGG
GTATTATAGTTCGTATTGTGACTGACTGTGAAAAAATGGACCTGAATTGC
TCACAAATAGAACAAATGCGTGCCAAAGGTATACAAGTACGACACGATAA
AACTTCATATTTCATGCATCATAAATTTGCCCTTGTTGATGATAAATTTC
TTGTTAACGGCTCTTTTAATTGGACTAAACAAGCAATAACTGGGAACCAA
GAAAATGTGATCATATCAGCTGAGAAAGATTTGATCACAccttataaaaa
acagttcGAAAAACTCTGGAATATGTATAAACCGGGTTCTCAACAGTgac
ttaaaaaacttttttacattttgtccaatatttttattgtgtatatttta
atttttaatatgTAAAATTACATGAAATTACAATATTGAATAAAGTGCTT
TATGTTGTAGTTGAAAAAAAC
Run BLAST on NCBI

transcript from alignment at sc0000597:193367..196087-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00026976 ID=TCONS_00026976|Name=TCONS_00026976|organism=Clytia hemisphaerica|type=transcript|length=2721bp|location=Sequence derived from alignment at sc0000597:193367..196087- (Clytia hemisphaerica)
TTGCCGTCATTTTCGATGAGCAAAATATGAAAAAGAAAACAAAAAATGGA
CGACAAGAAAATATTTACAAAAATAAACACGTTCGTAAAACGCTAAAGTT
CTTATAATAAAAAAGACGCTTTTTTAGTGAAAAAGCGTATGGTTTTGAAA
AGTTCAAATACTCCTGTATCATCTTGGAGGAGAGTTAAAGTATTACCTGC
GAGTGGAGCTCTAATTTTTTCTTGCGAAAGATCGTTCGCGCACTGGTTCC
TCGTTTGCGGACTGGGTTCGCATAGCGCTCGCTTTAACGACTTATTATTC
CAAGAAAGAGCTTTCAAATAAAGTGAAAACAAAGTGAAAGAAGGACTTCA
AGCTCATCTACGAGATGGTCTAAAAGGATTTATGTAAAAACCAAAAGTAA
GTGAGAAAAGTGAAAAATGAGTTTGGCCTTCGTGCATTGGGCACCCCCTC
TACTAATCGATAAATTCGATTATCGAAGTAAACGATAATGCTCGAAGTAA
TCGAACGACCACTTATCGGTTAACAATCGAACAACCACTTATCGATTAAC
AATCGAATGTCGAGTACCAAAATTTCAAAAATATTGTGAGTATTTGATCA
CTTTCTTAACAACCCTTCGAAGACTCAATAACCGTTCGAGTACTTTGATT
GTTATTGATTACTTTCGATAACTTTGACAGCTTTGATAACCAATTGATTA
CTTCGATAACTAATTACTATGATTATCTTGAAGAAAAAACAAAAAAAATG
ACCTAAAACCAAAGCACAAAAAGAAGCCCCCCCTTATTCCCCAGCCATTT
CGCCCGCCGTTTTGTGTGTCTTCGCCCTGGGTTTCCTCTATTACCTCATA
TCGCGCGTTTTGATTGGTCAGAGAAAACGAAAGTGGTTTTGGCGCGTTCT
GATTGTTTGGAGAAAACAAAAGTAGTTTTTGCACGTGAATAAAATAAAAT
TGGTTTCAGATTATTTTGAGGCGCTGCTACTGGAAACATATTTTGCGTGT
GTGTGTGTGTATCGAAGGCTGGAAGGTACTCAATACAATCGAAAAGTAAT
CGAAATGATTGAACAAATCGAAAATGGTTGAAGAAAATGCCATAATCTGG
AGTCGAGTAAGTATTCTAACACCGATAAAATCGATAGGTGGTCACTGACC
ACCTTCGATTATTATCGATCATTATTGATTACTTCGATCACAATCGAACA
TTCAATTAGTACCGTCTGGCTAAGAGTAAAGGTCTATGCACCTCAAATAT
GCTATAAACAAATGCAAAAGATCTTTGTTTTTATTGAGTTGCTTCTAAGG
CAAACATGAAATTGATATGATCAGAAAGTTAATTCAATGTTTTATTCAAT
CTCATTTGTAAATTTTGTGGTTTTGCTCTGGGAGATTATTCCAAAACCTT
GGGAATATTAGGTATTTGTATGTGTATGTGATGGCACTATGTCGAGGCCG
AAATATTCAGAATAAAGATCATTGTAAAAACACATCCTTTTAAAAACCTT
GGATGGGATTAATTTAATTAAGTAAGGGTTTCAGTCATTTAGATTAAAGC
CCAAAGGGCTAGAGTAGAATCTCTAAGCTTTTCCAGGCAAGAAAAAGTGA
AACCACTTATTTCCCATCCATAACGCGACTAGAACGCGCTGCAATCATGA
CGACGGATTTTATCTAGTAGTTCCTTTGTTTTTGAAGACTGCAATTCTTG
AAATCTAGCAATAGATTTAACTTTCAATCTGGCGTTTGTGTAAAAACCAC
ACGCGGATGTTCTGGGCGAAAAATAAGTGGCTTCATTTCCCATCCAGGAG
TCTCGAGTCTAGCCCTTCAGGCTTGGAAGTAAGGGTTTAAATCCCCCTCT
TTTCATTTATTTTTGATTAATTAATTTTTAACACTGAATAAAGAAAGAAG
AAAACGATGTTACATGTAGTAAAAAAATTCGTTTTCAAGTACGCTTGTCA
ACCATTATTTTATGTTTGGATTACTCATGCAAGCTATGTCACAATCAAGA
TTACATATCTTTCACTGATGGCTTCGGTTAGGGGTATATCTGGCAGGAAG
GAGATAAAACAACAAACAGGACCTAAATCAACAGTGTTGTTTTTCCCTGA
TAAAAAGCAGTTATGTGGATCACTTGTGCAACAATCCAAGAAATGTCCAG
GATTAGAGACTTGTTTGTTTGGACATAAAGAAACATCACTTTGGAAACTG
ATTGATACACTTGAGTCAAGTCAATTTAAACTTGATGTTTGTGTTTTCGT
AATAACTTCACAAGATTTAGCAGACATTCTGATTAAGAAACACAAAGAGG
GTATTATAGTTCGTATTGTGACTGACTGTGAAAAAATGGACCTGAATTGC
TCACAAATAGAACAAATGCGTGCCAAAGGTATACAAGTACGACACGATAA
AACTTCATATTTCATGCATCATAAATTTGCCCTTGTTGATGATAAATTTC
TTGTTAACGGCTCTTTTAATTGGACTAAACAAGCAATAACTGGGAACCAA
GAAAATGTGATCATATCAGCTGAGAAAGATTTGATCACACCTTATAAAAA
ACAGTTCGAAAAACTCTGGAATATGTATAAACCGGGTTCTCAACAGTGAC
TTAAAAAACTTTTTTACATTTTGTCCAATATTTTTATTGTGTATATTTTA
ATTTTTAATATGTAAAATTACATGAAATTACAATATTGAATAAAGTGCTT
TATGTTGTAGTTGAAAAAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015142XLOC_015142Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026976-exon-sc0000597-1575043694:193367..196087TCONS_00026976-exon-sc0000597-1575043694:193367..196087Clytia hemisphaericaexon
TCONS_00026976-exon-sc0000597-1510915933:193367..196087TCONS_00026976-exon-sc0000597-1510915933:193367..196087Clytia hemisphaericaexon
TCONS_00026976-exon-sc0000597-1491911889:193367..196087TCONS_00026976-exon-sc0000597-1491911889:193367..196087Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000597supercontigsc0000597:193367..196087 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.92485	3.2954	31.4861	40.2158	3.08992	2.40358	2.21587	3.09555	1.51003	1.90935	1.40308	1.87659	1.61312	1.78411	1.68549	1.71533	1.54301	1.79066	1.66507	1.83449	2.47183	2.27116	6.79045	5.43282	2.76852	3.32711	2.05541	1.41118	3.78394	3.93137
Blast
[Close]
BLAST of TCONS_00026976 vs. Swiss-Prot (Human)
Match: PLD6 (Mitochondrial cardiolipin hydrolase OS=Homo sapiens GN=PLD6 PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 5.992e-33
Identity = 67/175 (38.29%), Postives = 104/175 (59.43%), Query Frame = 2 
Query: 2084 VLFFPDK--------KQLCGSLVQQSKKCPGLETCLFGHKETSLWKLIDTLESSQFKLDVCVFVITSQDLADILIKKHKEGIIVRIVTDCEKMDLNCSQIEQMRAKGIQVRHDKTSYFMHHKFALVDDKFLVNGSFNWTKQAITGNQENVIISAEKDLITPYKKQFEKLWNMYKP 2584
             LFFP +        +     L +  + CP    C   H E++L +L+  L +++  LD+C+F  +S  L   +   H+ G+ VR+VTDC+ M LN SQI  +R  GIQVRHD+   +MHHKFA+VD + L+ GS NWT QAI  N+ENV+I+ + + +  + ++FE++W  + P
Sbjct:   41 ALFFPSQVTCTEALLRAPGAELAELPEGCP----CGLPHGESALSRLLRALLAARASLDLCLFAFSSPQLGRAVQLLHQRGVRVRVVTDCDYMALNGSQIGLLRKAGIQVRHDQDPGYMHHKFAIVDKRVLITGSLNWTTQAIQNNRENVLITEDDEYVRLFLEEFERIWEQFNP 211
The following BLAST results are available for this feature:
BLAST of TCONS_00026976 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PLD65.992e-3338.29Mitochondrial cardiolipin hydrolase OS=Homo sapien... [more]
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