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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026980 ID=TCONS_00026980|Name=TCONS_00026980|organism=Clytia hemisphaerica|type=transcript|length=1771bp
ATCGTTTTTTGTATTTACGTATACTGCACAGTGGTATAGCTTTCAAAAAT
TAAAGACAATTATTTATATGGTAAtatcttgcaaaaaaaaatttacgtaA
ATAAAGACTTggtattcaaaaacaaaacgcaGGAGTTAGAATTTCTGTTG
GGATTGCCTACTGTAAAGAAGATATTGAATATAACTCGTTGAGTCTTTTC
AAAGAGAGGCTTTATCTGGAAATCTCATCATTTGatacaaagaaagattt
tctttaaACTTCTTTGCTGGATTATACCACAGCTGACAGAACTTTGGAAA
CATTGACAATTTTAGCTGACATTAAAAGTGAAGATAACAGAATCACGAAA
TAAAAATGGCACTTTTCAAATACTTGAAAACGTCAAAATTAATTCTACTT
TTCACTTTAATGAGAGGTTTGAGTAATGGCCAAGACTCACTTGATCGAAA
CTCAACCCCTGACATTACTGGAGTAAACCAAATTGCCAATATAACCAAAT
CTAAAGTGTACACAACATTGATTCATGACGCTCCACCGACTACAAACATT
ACAAATCATTCTCAGGACAATTCTTGGTTAATACCGAATTTGATTCTAAT
CTCTATCGGATTGTTAGCAAACATCCTAGTCATCTTCTTGAGCTACTGGA
CATGGCGAATCTCCACACATTACAAGCTAACAACCTGTCTTGCTGTCTCG
GATGCATTTTACTGTCTATTGTTCCTAATCCTGAACACAATGAGAGCCTT
CGGTGAATATCCAACCGGAATCAGTTGCAAATTGCTACGTTCTCTCATCT
TTTCAAACATGTTTTCAGACGTTGGGTTAGTCCTTTTATTATCAACAGAT
CGATACATTTCTATTTGCCATCCACTCAAAGGTGGTAtcaaattgaaaaa
catttacaccattATTTTAACCATTGTTGCTTTCTCTATCATCTCTGTCA
TACCTTTGATGATCAATTACTGCGAACCTACCCATGACATGGCGTTCTAT
AAAGGATTTGCCTGGTATCAATTCATAGCGGTGGCATTTTTCCCATGTAT
TATCCTAACTGTCTTGTATTACCAGAGTATCACAACACTGCACGCCATTA
CCGAGTCGATTCTACATTGTTCCAATGATGCAACTCTAGAACGTCGCCAG
AAAGAGAATAAACGAATCTTAGCCATTATTATCACACTTGTTGTCACCTT
TTTCGTCTTGTTGGTACCATCAAGTCTTACCTACATTATTGGTTTCTATG
TACCAAACATACCACCGTTTTGGAACGAATTCATGGCTGTTTATACAGAA
AATGTGTTCCCCTTGCATACCATTTTCAATCCTGTCATATATTCGTTGGT
GGATCAACGGATTAGGAAAATCATCCGAGGCTTTTGGCGTACTGGAGTAA
ATAGGCGACAACTCAGTGAGTTTGGATCACTTAAAACATCTGCAACGGTG
GTTTAGTGAGAGatactttgaaaatgttgactttgaagttttttgaagAA
ACCTAATGCTAATCACATTTTGGTCATTGAAGGTCAAATAATAATTGCTT
TCATGATGCAATTTGTGTGATTTGGGAGAAAATTCAAATGCTTGAAGACT
ATACATTCCCATCAATAAGAAACCATACGCTAAATTTGCTGTGTAGAATG
GGGTAGAATCCATTTTCCGACTCAGACAAAAAGCTTGCTTTGAACACTGC
TTAAAAGATTGGAAAAATGATATATAGTTAGTAATAAGCTTACTAGTAAA
ACCTTTGCTAAAAGTGCCGTT Run BLAST on NCBI protein sequence of TCONS_00026980-protein >TCONS_00026980-protein ID=TCONS_00026980-protein|Name=TCONS_00026980-protein|organism=Clytia hemisphaerica|type=polypeptide|length=366bp
MALFKYLKTSKLILLFTLMRGLSNGQDSLDRNSTPDITGVNQIANITKSK
VYTTLIHDAPPTTNITNHSQDNSWLIPNLILISIGLLANILVIFLSYWTW
RISTHYKLTTCLAVSDAFYCLLFLILNTMRAFGEYPTGISCKLLRSLIFS
NMFSDVGLVLLLSTDRYISICHPLKGGIKLKNIYTIILTIVAFSIISVIP
LMINYCEPTHDMAFYKGFAWYQFIAVAFFPCIILTVLYYQSITTLHAITE
SILHCSNDATLERRQKENKRILAIIITLVVTFFVLLVPSSLTYIIGFYVP
NIPPFWNEFMAVYTENVFPLHTIFNPVIYSLVDQRIRKIIRGFWRTGVNR
RQLSEFGSLKTSATVV Run BLAST on NCBI transcript from alignment at sc0000597:12234..14004 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00026980 ID=TCONS_00026980|Name=TCONS_00026980|organism=Clytia hemisphaerica|type=transcript|length=1771bp|location=Sequence derived from alignment at sc0000597:12234..14004 (Clytia hemisphaerica)
AACGGCACTTTTAGCAAAGGTTTTACTAGTAAGCTTATTACTAACTATAT
ATCATTTTTCCAATCTTTTAAGCAGTGTTCAAAGCAAGCTTTTTGTCTGA
GTCGGAAAATGGATTCTACCCCATTCTACACAGCAAATTTAGCGTATGGT
TTCTTATTGATGGGAATGTATAGTCTTCAAGCATTTGAATTTTCTCCCAA
ATCACACAAATTGCATCATGAAAGCAATTATTATTTGACCTTCAATGACC
AAAATGTGATTAGCATTAGGTTTcttcaaaaaacttcaaagtcaacattt
tcaaagtatCTCTCACTAAACCACCGTTGCAGATGTTTTAAGTGATCCAA
ACTCACTGAGTTGTCGCCTATTTACTCCAGTACGCCAAAAGCCTCGGATG
ATTTTCCTAATCCGTTGATCCACCAACGAATATATGACAGGATTGAAAAT
GGTATGCAAGGGGAACACATTTTCTGTATAAACAGCCATGAATTCGTTCC
AAAACGGTGGTATGTTTGGTACATAGAAACCAATAATGTAGGTAAGACTT
GATGGTACCAACAAGACGAAAAAGGTGACAACAAGTGTGATAATAATGGC
TAAGATTCGTTTATTCTCTTTCTGGCGACGTTCTAGAGTTGCATCATTGG
AACAATGTAGAATCGACTCGGTAATGGCGTGCAGTGTTGTGATACTCTGG
TAATACAAGACAGTTAGGATAATACATGGGAAAAATGCCACCGCTATGAA
TTGATACCAGGCAAATCCTTTATAGAACGCCATGTCATGGGTAGGTTCGC
AGTAATTGATCATCAAAGGTATGACAGAGATGATAGAGAAAGCAACAATG
GTTAAAATaatggtgtaaatgtttttcaatttgaTACCACCTTTGAGTGG
ATGGCAAATAGAAATGTATCGATCTGTTGATAATAAAAGGACTAACCCAA
CGTCTGAAAACATGTTTGAAAAGATGAGAGAACGTAGCAATTTGCAACTG
ATTCCGGTTGGATATTCACCGAAGGCTCTCATTGTGTTCAGGATTAGGAA
CAATAGACAGTAAAATGCATCCGAGACAGCAAGACAGGTTGTTAGCTTGT
AATGTGTGGAGATTCGCCATGTCCAGTAGCTCAAGAAGATGACTAGGATG
TTTGCTAACAATCCGATAGAGATTAGAATCAAATTCGGTATTAACCAAGA
ATTGTCCTGAGAATGATTTGTAATGTTTGTAGTCGGTGGAGCGTCATGAA
TCAATGTTGTGTACACTTTAGATTTGGTTATATTGGCAATTTGGTTTACT
CCAGTAATGTCAGGGGTTGAGTTTCGATCAAGTGAGTCTTGGCCATTACT
CAAACCTCTCATTAAAGTGAAAAGTAGAATTAATTTTGACGTTTTCAAGT
ATTTGAAAAGTGCCATTTTTATTTCGTGATTCTGTTATCTTCACTTTTAA
TGTCAGCTAAAATTGTCAATGTTTCCAAAGTTCTGTCAGCTGTGGTATAA
TCCAGCAAAGAAGTttaaagaaaatctttctttgtatCAAATGATGAGAT
TTCCAGATAAAGCCTCTCTTTGAAAAGACTCAACGAGTTATATTCAATAT
CTTCTTTACAGTAGGCAATCCCAACAGAAATTCTAACTCCtgcgttttgt
ttttgaataccAAGTCTTTATTtacgtaaatttttttttgcaagataTTA
CCATATAAATAATTGTCTTTAATTTTTGAAAGCTATACCACTGTGCAGTA
TACGTAAATACAAAAAACGAT Coding sequence (CDS) from alignment at sc0000597:12234..14004 >TCONS_00026980 ID=TCONS_00026980|Name=TCONS_00026980|organism=Clytia hemisphaerica|type=CDS|length=1101bp|location=Sequence derived from alignment at sc0000597:12234..14004 (Clytia hemisphaerica)
CTAAACCACCGTTGCAGATGTTTTAAGTGATCCAAACTCACTGAGTTGTC
GCCTATTTACTCCAGTACGCCAAAAGCCTCGGATGATTTTCCTAATCCGT
TGATCCACCAACGAATATATGACAGGATTGAAAATGGTATGCAAGGGGAA
CACATTTTCTGTATAAACAGCCATGAATTCGTTCCAAAACGGTGGTATGT
TTGGTACATAGAAACCAATAATGTAGGTAAGACTTGATGGTACCAACAAG
ACGAAAAAGGTGACAACAAGTGTGATAATAATGGCTAAGATTCGTTTATT
CTCTTTCTGGCGACGTTCTAGAGTTGCATCATTGGAACAATGTAGAATCG
ACTCGGTAATGGCGTGCAGTGTTGTGATACTCTGGTAATACAAGACAGTT
AGGATAATACATGGGAAAAATGCCACCGCTATGAATTGATACCAGGCAAA
TCCTTTATAGAACGCCATGTCATGGGTAGGTTCGCAGTAATTGATCATCA
AAGGTATGACAGAGATGATAGAGAAAGCAACAATGGTTAAAATaatggtg
taaatgtttttcaatttgaTACCACCTTTGAGTGGATGGCAAATAGAAAT
GTATCGATCTGTTGATAATAAAAGGACTAACCCAACGTCTGAAAACATGT
TTGAAAAGATGAGAGAACGTAGCAATTTGCAACTGATTCCGGTTGGATAT
TCACCGAAGGCTCTCATTGTGTTCAGGATTAGGAACAATAGACAGTAAAA
TGCATCCGAGACAGCAAGACAGGTTGTTAGCTTGTAATGTGTGGAGATTC
GCCATGTCCAGTAGCTCAAGAAGATGACTAGGATGTTTGCTAACAATCCG
ATAGAGATTAGAATCAAATTCGGTATTAACCAAGAATTGTCCTGAGAATG
ATTTGTAATGTTTGTAGTCGGTGGAGCGTCATGAATCAATGTTGTGTACA
CTTTAGATTTGGTTATATTGGCAATTTGGTTTACTCCAGTAATGTCAGGG
GTTGAGTTTCGATCAAGTGAGTCTTGGCCATTACTCAAACCTCTCATTAA
AGTGAAAAGTAGAATTAATTTTGACGTTTTCAAGTATTTGAAAAGTGCCA
T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00026980-exon-sc0000597-1491911889:12234..14004 | TCONS_00026980-exon-sc0000597-1491911889:12234..14004 | Clytia hemisphaerica | exon |
| TCONS_00026980-exon-sc0000597-1510915933:12234..14004 | TCONS_00026980-exon-sc0000597-1510915933:12234..14004 | Clytia hemisphaerica | exon |
| TCONS_00026980-exon-sc0000597-1575043694:12234..14004 | TCONS_00026980-exon-sc0000597-1575043694:12234..14004 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000597 | supercontig | sc0000597:12234..14004 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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