|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026993 ID=TCONS_00026993|Name=TCONS_00026993|organism=Clytia hemisphaerica|type=transcript|length=2035bp
CAAACAGCGTAGTACTGGAGACACGGAAAGTGAAAAATGTCGGAGGGAAA
AGAAAAAGACGATCTAAATGTAGACGATTTCTTAGGATTTGTAGGTGAAT
TTGGAAAATTCCAGAAAATCCTAACCCTCATTTTTGCGTTTATGTTATGG
CCTTATTTCTTCGTTTACTATGTAATGTACTTTGCAGCCTTAAAGCCAGA
GTGGAGATGCGCTGCAAACCGTACCGCATGCCAATTCAATGGGACTTTTA
CTCATGAAGATAAATACCGTTGTGGAATATCAAGATCAGATTGGGAATAT
GTTCAACCGAAAGATTACTCTATTATTGTTCAATATGATCTCTCTTGTGA
TAATGATTGGTTAGTTTTCCTTGCCACCTCAATAACCTTCGTTGGCGGAG
TATTTGGCGCCGTATTTCTTGGGTGGTACAGTGACAATTTTGGGCGGAAA
AAGATTCTTTATGTTTGCTTCTTCTTTGTTATTTTAACGAATTTCTTATT
GATTTTCATGCCGAGTATTGCATCGTTTATTGTGTTCCGATTTATGACCG
GCTTCTTGGTAGCGTCCGTATATCCGTGTTACTATGTCACACTAAATGAA
ACTGTAGGTGAGAAATACCGTGCCATTGCTGGTAACACGCTCTGGTTTCT
CTACACGGCAGCTCTTTGTATGATGTCCTTGAAATCGTACCTACTTGATA
ACTGGAAGTATTTCATTATCGCTTGTACCCTACCTTATTTACCGTTTCTA
CTGAGCTACAATTTTGTTCCTGAATCAGTCCGTTGGTTGAGGTTAAAAGG
ACGCATGTACGAGGCTATGAAGATCTTTCGACGAATGGCAGATTGGAATG
GGAAGGTACTTGATCCAACTGTAATGTTATCTCCAGGTGCACATGCAGCT
AAAATGACCAGCCCCATTGATGTATTCCGGAATGGCAAACGAATGGCTAT
CCATACAGTGATCCTAATTTATTGCTTCTATGCGACAGCTTTGATTTATT
ACGGCCTTTCACTGGCAGCTGATAATCTAGGGGCCGGCTCCATTCATTTA
AATTTTGTTCTGCTCAGTTTGGTTGAATTTCCTGCTGCTATTATTTCAGC
CTACTCAGCTAATCGATTTGGTCGATTGAAATCTACGGCTATACCGATCT
TTCTAAGCGGAGTCTTGACCGTAATAATCCCTTTTATCCCCGATACGTCT
ACTACGACCCGCGTAATTCGTGTTTTCGTTGGCATATTTGGTAAATTCTG
GATCACATTTTGTTTCGATGTTATCGAGGTTCTCGTTTGTGAAGTTTACC
CGACCAATATCCGATCGGAGGCGTTCAGCATAATGTCCATTTCAAATTGG
GTGGGCGGCGCCAGCGCACCATGGGTGTCCAAAGGGCTAGAAAGATTTGA
TATCGCTCTACCGTATNGGAGTCTTGACCGTAATAATCCCTTTTATCCCC
GATACGTCTACTACGACCCGCGTAATTCGTGTTTTCGTTGGCATATTTGG
TAAATTCTGGATCACTTTTTGTTTCGATGTTATCGAGGTTCTCGTTTGTG
AAGTTTACCCGACCAATATCCGATCGGAGGCGTTCAGCATAATGTCCATT
TCAAATTGGGTGGGCGGCGCCAGCGCACCATGGGTGTCCAAAGGGCTAGA
AAGATTTGATATCGCTCTACCGTATTACGTCATGGGTATAATTGGTATCG
TTGCAGGATGTCTTTGCTATTTTTTACCAGAAACAAACGGTGCTGCTTTA
AAGGAAATTAATGATGAAGTCAATAATACCTCGAATAAAGTTGACACAGA
AATGGCTAACTTCTCTAAAGACAGAAATGATTAACTTCAATGACGAAAAT
TACTAGTTACTCCAGTGTAATGAAAGCATAGAATTGTGAGGTAAAGCCTT
ATTTATACTCGAACTTTAAGTTTATCCAGtgccagtttgcagagtgtgAA
ATCTTGAATGCACAACTCGGGAAAAGTCGAGTGCaggtgtaaaatttgag
gttttcaggtgcaagtTCAGACGGTTTTTAATCTC Run BLAST on NCBI transcript from alignment at sc0000597:139780..141814 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00026993 ID=TCONS_00026993|Name=TCONS_00026993|organism=Clytia hemisphaerica|type=transcript|length=2035bp|location=Sequence derived from alignment at sc0000597:139780..141814 (Clytia hemisphaerica)
GAGATTAAAAACCGTCTGAacttgcacctgaaaacctcaaattttacacc
tGCACTCGACTTTTCCCGAGTTGTGCATTCAAGATTTcacactctgcaaa
ctggcaCTGGATAAACTTAAAGTTCGAGTATAAATAAGGCTTTACCTCAC
AATTCTATGCTTTCATTACACTGGAGTAACTAGTAATTTTCGTCATTGAA
GTTAATCATTTCTGTCTTTAGAGAAGTTAGCCATTTCTGTGTCAACTTTA
TTCGAGGTATTATTGACTTCATCATTAATTTCCTTTAAAGCAGCACCGTT
TGTTTCTGGTAAAAAATAGCAAAGACATCCTGCAACGATACCAATTATAC
CCATGACGTAATACGGTAGAGCGATATCAAATCTTTCTAGCCCTTTGGAC
ACCCATGGTGCGCTGGCGCCGCCCACCCAATTTGAAATGGACATTATGCT
GAACGCCTCCGATCGGATATTGGTCGGGTAAACTTCACAAACGAGAACCT
CGATAACATCGAAACAAAAAGTGATCCAGAATTTACCAAATATGCCAACG
AAAACACGAATTACGCGGGTCGTAGTAGACGTATCGGGGATAAAAGGGAT
TATTACGGTCAAGACTCCNATACGGTAGAGCGATATCAAATCTTTCTAGC
CCTTTGGACACCCATGGTGCGCTGGCGCCGCCCACCCAATTTGAAATGGA
CATTATGCTGAACGCCTCCGATCGGATATTGGTCGGGTAAACTTCACAAA
CGAGAACCTCGATAACATCGAAACAAAATGTGATCCAGAATTTACCAAAT
ATGCCAACGAAAACACGAATTACGCGGGTCGTAGTAGACGTATCGGGGAT
AAAAGGGATTATTACGGTCAAGACTCCGCTTAGAAAGATCGGTATAGCCG
TAGATTTCAATCGACCAAATCGATTAGCTGAGTAGGCTGAAATAATAGCA
GCAGGAAATTCAACCAAACTGAGCAGAACAAAATTTAAATGAATGGAGCC
GGCCCCTAGATTATCAGCTGCCAGTGAAAGGCCGTAATAAATCAAAGCTG
TCGCATAGAAGCAATAAATTAGGATCACTGTATGGATAGCCATTCGTTTG
CCATTCCGGAATACATCAATGGGGCTGGTCATTTTAGCTGCATGTGCACC
TGGAGATAACATTACAGTTGGATCAAGTACCTTCCCATTCCAATCTGCCA
TTCGTCGAAAGATCTTCATAGCCTCGTACATGCGTCCTTTTAACCTCAAC
CAACGGACTGATTCAGGAACAAAATTGTAGCTCAGTAGAAACGGTAAATA
AGGTAGGGTACAAGCGATAATGAAATACTTCCAGTTATCAAGTAGGTACG
ATTTCAAGGACATCATACAAAGAGCTGCCGTGTAGAGAAACCAGAGCGTG
TTACCAGCAATGGCACGGTATTTCTCACCTACAGTTTCATTTAGTGTGAC
ATAGTAACACGGATATACGGACGCTACCAAGAAGCCGGTCATAAATCGGA
ACACAATAAACGATGCAATACTCGGCATGAAAATCAATAAGAAATTCGTT
AAAATAACAAAGAAGAAGCAAACATAAAGAATCTTTTTCCGCCCAAAATT
GTCACTGTACCACCCAAGAAATACGGCGCCAAATACTCCGCCAACGAAGG
TTATTGAGGTGGCAAGGAAAACTAACCAATCATTATCACAAGAGAGATCA
TATTGAACAATAATAGAGTAATCTTTCGGTTGAACATATTCCCAATCTGA
TCTTGATATTCCACAACGGTATTTATCTTCATGAGTAAAAGTCCCATTGA
ATTGGCATGCGGTACGGTTTGCAGCGCATCTCCACTCTGGCTTTAAGGCT
GCAAAGTACATTACATAGTAAACGAAGAAATAAGGCCATAACATAAACGC
AAAAATGAGGGTTAGGATTTTCTGGAATTTTCCAAATTCACCTACAAATC
CTAAGAAATCGTCTACATTTAGATCGTCTTTTTCTTTTCCCTCCGACATT
TTTCACTTTCCGTGTCTCCAGTACTACGCTGTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00026993-exon-sc0000597-1491911889:139780..141814 | TCONS_00026993-exon-sc0000597-1491911889:139780..141814 | Clytia hemisphaerica | exon |
| TCONS_00026993-exon-sc0000597-1510915933:139780..141814 | TCONS_00026993-exon-sc0000597-1510915933:139780..141814 | Clytia hemisphaerica | exon |
| TCONS_00026993-exon-sc0000597-1575043694:139780..141814 | TCONS_00026993-exon-sc0000597-1575043694:139780..141814 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000597 | supercontig | sc0000597:139780..141814 . |
Blast
BLAST of TCONS_00026993 vs. Swiss-Prot (Human)
Match: S22A3 (Solute carrier family 22 member 3 OS=Homo sapiens GN=SLC22A3 PE=1 SV=1) HSP 1 Score: 163.696 bits (413), Expect = 4.802e-43 Identity = 137/493 (27.79%), Postives = 227/493 (46.04%), Query Frame = 1
Query: 73 DDFLGFVGEFGKFQKILTLI-------FAFML--------WPXXXXXXXXXXAAL--------KPEWRCAANRTACQFNGTFTHEDKYRCG----------------------------------ISRSDWEYVQPKDYSIIVQYDLSCDNDWLVFLATSITXXXXXXXXXXLGWYSDNFGRKKILYVCFFFVILTNFLLIFMPSIASFIVFRFMTGFLVASVYPCYYVTLNETVGEKYRAIAGNTLWFLYTAALCMMSLKSYLLDNWKYFIIACTLPYLPFLLSYNFVPESVRWLRLKGRMYEAMKIFRRMADWNGKVLDPT-VMLSPGAHAAKMTSPIDVFRNGKRMAIHTVILIYCFYATALIYYGLSLAADNLGAGSIHLNFVLLSLVEFPAAIISAYSANRFGRLKSTAIPIFLSGVLTVIIPFIPDTSTTTRVIRVFVGIFGKFWITFCFDVIEVLVCEVYPTNIRSEAFSIMSISNWVGGASAPWV 1377
D+ L VGEFG+FQ+ + L+ FAF+ P + AAL + EW NRTA G E + RC R W Y Q +I+ ++DL C N W++ L +I +G + GA LG+ +D +GR I + V +T ++ F P+ F++FRF+ G + YV + E VG K R I G + +T + ++ +Y + NW+ +A TLP FLL Y VPES RWL + + +A++I RR+A NGK L ++ S +D+ R +M T+IL++ ++ +A++Y GL + +G G+++++F + +VE P A++ + R GR A ++GV ++ F+P+ +R V G+ IT F+++ ++ E+YPT +R+ S+ S GG AP++
Sbjct: 5 DEALQRVGEFGRFQRRVFLLLCLTGVTFAFLFVGVVFLGTQPDHYWCRGPSAAALAERCGWSPEEEW----NRTAPASRGPEPPERRGRCQRYLLEAANDSASATSALSCADPLAAFPNRSAPLVPCRGGWRYAQAHS-TIVSEFDLVCVNAWMLDLTQAILNLGFLTGAFTLGYAADRYGRIVIYLLSCLGVGVTGVVVAFAPNFPVFVIFRFLQGVFGKGTWMTCYVIVTEIVGSKQRRIVGIVIQMFFTLGIIILPGIAYFIPNWQGIQLAITLPSFLFLLYYWVVPESPRWLITRKKGDKALQILRRIAKCNGKYLSSNYSEITVTDEEVSNPSFLDLVRT-PQMRKCTLILMFAWFTSAVVYQGLVMRLGIIG-GNLYIDFFISGVVELPGALLILLTIERLGRRLPFAASNIVAGVACLVTAFLPEGIAW---LRTTVATLGRLGITMAFEIVYLVNSELYPTTLRNFGVSLCSGLCDFGGIIAPFL 487
The following BLAST results are available for this feature:
|
