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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027003 ID=TCONS_00027003|Name=TCONS_00027003|organism=Clytia hemisphaerica|type=transcript|length=1873bp
GCTTTCTTGTGATGATTTGAAGTATTTGCAATTCAAGTGCTTTTAACTTA
ACCAGAAAACTCAAGACGAACGTAGGACAGAAGCCTATCGTATAGTAAGA
CAGAGATTGTTTTCGagaaaaattatctaaaaatgGCTGACGTTGTAAAT
ATGAATGAATTTAATGAACAATTTGCAGTGAACTTTAATACTGAAGAAGC
AAAAATTGCGAAAGAAGTCGCACAACAATTTGTTGTCAAACTGTCTGGTG
GATTATTAAAAACGACTCGAAGAGAGACAGAAGTTATGTTAAAATTAGTT
GCAGACGCGAATCCTCAACAAGTTGAACAATTATCAAATTTAGTGAGTGG
TATCAAATTTACAGAGGAAAATGGATATCGTACTCTAATGCGCATGTGCG
AATCTTTATTTGGTACTGGGATTAATTGGGGACGAATTATTACTTTGTTT
TTATATGTATCGCTACTGATAGACGATTTACACAAAGCTGGTAAAGATAC
TTTTAATGATAGAATTGGACATTGGTTAGGTTGTTGTATTGCTAAGCAAG
CTCCATGGATTAAAGAGAATGGCGGATGGGCTGCATTCCTTTCATCTATG
GGTGGTGCCAGTGAACTTAAAGATACAGTCTTCAAAGGTCTCTTCAATGT
CACTCTTGGCCTTGGTACGATAGCTGCAGCTCTTTACATCAAAGGACGTT
GAACTGGAGCTTCATCCCTGGGAGATGGGTTTGGGAATCCGTGGAGTAAA
CTGTTGAAAGGGTGCTGCAGCAAAAGCCAGCTCTTGGACTCGTGGAGATT
TACGAGGAATTCATCAGTTTTTTCAGATGGAAACCAAAAAATCAAGCACC
ATCTGAGCTAGATTTCACTAGATTGGTAATATCTACTGCTAACACGAGAC
TGGTTTTTGAATTGACAGAAACAAAACAACTAACattgaaaagtttcatt
tcTCTACAAGATTGCCTGCGAATTTTCATTTCTTAATAATTTTTACGAAA
ATATTGGTGTGAAAGTTTGGTTTGCGTGGTGGTATTGAATACAAcataca
aaatagaaaatttcattacgTTTGGATTGGTTGGTTACATActggttttt
attttgttattactAACTGACAGCCTTTGGCTGATAGACATTGAATATGG
CTGGTCCAAAGGATTCAATACAACATCAGATTGCTATTCGGAAATCTTAG
AAGGAGAGAATGGCATGagaaaattcatcaaagacCTGCTAATTTTTAGT
TGATGGGAAAAACATTACAAACTTTctagaaaagtcatacaaacaGAAAG
AATGTTGATTATTTATCAATCAAAAAGCTGTATCTGTATTTAGATTTTGC
TATTCCCAGCCTACTAAATCTACTATTAgttcattttttatcaattttaa
attCTCTATTGAAAAATACTGCTATTTATTACTATGCCCCCTTTATCCCC
CTGTAAATATTAGATAATATAAAAAGGACATTTTTTGTGATGGTATTACT
CTCTGAGTTGGTATTTTGATTTAATATTGATGTATGAAACCGACTTTGAA
AGGTATGCGATTTGATCCTATTAAATTTGCAATATCGATTGACAGTCAAA
AGTAGTCAATGTCAATATCAAAATACCAATAAACTGAGAATACTGAGGGT
GCGAGTTGAGTGAGAGTTTGTGTGTAAATTTTATTCATGATGAGAGAAGG
GTTCGACTTTTAACCCcagataaagattttattttatttagaaaacaaaa
gaattgtaCATAAGTAAATAGAGATAACTAAAAATAAATCTTAACAAGAA
GTTAAACCgttgtcattatttttatttCCCAATACAAAAAGATTGTGTTT
CAAACAATAAAGATGTAATTGTG Run BLAST on NCBI transcript from alignment at sc0000600:27881..36381+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027003 ID=TCONS_00027003|Name=TCONS_00027003|organism=Clytia hemisphaerica|type=transcript|length=8501bp|location=Sequence derived from alignment at sc0000600:27881..36381+ (Clytia hemisphaerica)
GCTTTCTTGTGATGATTTGAAGTATTTGCAATTCAAGTGCTTTTAACTTA
ACCAGGTACTGTATTGCGCATTTACTTGCGTTTATTACGAAAATGTTGTT
TGCAGGAGCCTAAGCAACCTTTTATAAAGTGAAGACGTTTTTAGAAATTG
CAAATATATTACTGGTCGATGCTTTGAGTACATATTTTCTTTGTATGTTT
ACAcgcaattaaaattttggtTATAAGAatttctttcaacaaatttcttt
attttgcttcttCGTTTTGCGTTTTTGCATTTTCAGTTCGTTTGCGTTTC
AACTTTTcttaatcttttgatttttagtatGTTTGAGAAATGTTTTGAGC
TAAAGGTGTTTTGTAGTAGCTGAAGTTTGATggtttaatgttttttgtaa
GATGCGATTTGGGCAGTTTGAATTTTCGCTATTAAAGCTTTGGACAACAG
TTTTTCCCTTCACTAGCTAGAATATTTCCAGATTTTAGAATGAAAGAGAT
CCACGATTTTAGAAATCGCCAGAGTAAATTTCAGTTATATTTGTTTGATC
CTTTTTCGCCGTCCCAAGACAGAATATTTCAACTCTTCGTTCCTAAATCG
GAGATTATTTGGGAGATTTTCCAAACTATTTTCCATGGAGAAATCGACCT
CGCATGTGCGATGATATGGTTAATCCAAAGCAGAATGCTTTTAGGAAAGG
TGTTTTGGTTTTCTTTAGTGCTGCCGATTTTATCTTTCGCATAggaagcc
cggggggggggggNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNTTCAAAAAGggagcccgggggggggggggcagtgggtttacca
actgacggtatgtgcggcgaaaaattggcttttagaatcgcacctttaca
gtgcaaaaaaaatcaacattttcgagcaaaaatttgcaatttttcccaga
tttgctgaaatttccacccttacagtgcatttatcaaaagtacaccctta
cagtgcatttctaatattttgaaaaacatacccttaagcGCCGCACATAC
CTGTCGGttaatttgcctgactgccccccccctgGGATAGGAAGCCAGAG
CTATGAAACAGGGGTAAATCTGGTTTAGACTTAGTATTTGGATTACTGTC
TTTTTTGTCAGTTGTGTTTTAAAGAACCTTCTGTGTGGTTTGATCTTTCT
CTAAATTGATTAAAtcatttgatgaaattttaagTAATTCAATAACAGGT
ATCTGGGTTGACCTGAAGTATCACCTTTCGTACTTAAACTCAGAGAAAAA
cccttaaaatgcaaaaatgatgTCGATATTTGTATGTATATATTCAGTTT
CAAATTAATCTTCTCGTATTTCAAGGGAGTTATCGAGGCAAATGTGTTGT
CAATTTTTCAAGCTCGGTAATAATATTGTAAATGATACATGGtattttat
gagaacatccaaaaaattttaagccttgggatgttcttatttttttaagt
tttaaagcctagaaatgttcttaacttgttcttaatttcaccatttcgtG
AGAATCTTTTAataatttcctaagaaattgccTGTTTTTAGAGCCCATTA
agccttaaaacgttcttaatttgttcttgttattttgaccatcgaaggcA
TATGctcttagtttgttcttataaaaaaaacttggtGGTGTAAGACAAAT
TGCTCAggactattcatgatatgcaccattgcaatgtcttccagggaccc
aacagctgattggtcgaAAGTGACGCATTGACTGATCAAACGTCGCTtgc
aatcagctgttgggtccgtggaagacattgcaatggtgcatatcatgaat
tgagaCAATTCTGAAAATACTGTCATCTCTCTGTGGGGTGAATTTGCAAC
GCTCAGGGCTGAAACATATGTGCCCAGCCCTATGGGCACGCAACGTCTTA
TGGACATTCCACGGCTTTAAGATCGttggacgtcctagaaacgtacatca
gacgtccaaaagacgggTGTGCCCATTGGGAGGGGCGaagaaaaatgtaa
atatcAATGGCTAGATCATATTGATGTATCCTCAAGCCATGAATCGATTC
TTCGGGACAAGGTAAATGCTCAAAAAGTTATAGCCAGGATTTGTACAGCA
ATTATACACTTGGGGGTAACTGGTGGGTGGGTGGTTTTTCTCTAGTGGGG
GCAGGGGTTTTAGGGGTCTTTAATATTGTCATACCGACTAAATTTTGGGC
CAAATACCTTAACACTGTCCTTTTTTCACGTAATACCGATTTGTGGGgaa
aaaaaggcccaataccgtcatatCTTAAAAGTGAACCCCCTCTAGTGGCA
AGTATTGCCAATTTGAGGTAATTTCCCCGTAATTTCCCGCTCGTGGGGAA
TGTTTATAATATACGATGACTCTGACGATGGGGTGGATTTCTTACCCAAG
TGTTCATATTCAAAAATGAAAGTTCTTTTCTCGAGCTAGTTGTTTTTTGT
TCAAATATTTGTTACAAGCTAGGCTTATAGAAACTGTCAAACATTACGTA
AACATTACGTACCAAAACTGGTACTAAACAACAAGAGGGCTCATACCGTT
CTTAATGTCAATGTCAATGTTTATGTACGTAAGATGAGTGTTGTAACGAT
CTTGTATGTCTAAAATACCCCTATATCATTGAACCAGTCAGATCCACCCG
GTGGAACTCCCGGTGGAGGAAATTGCCATAAGTCTCCAAATATTTAACCC
CGGTGTAATAACATGGACAAAAGagatggaaatatttttggttctagact
acCTCAACTAATAATCATAAAGTGGTAATTCAACCcggtaaaaattgaaa
aaaattgaaagagatTTTTGTTCCCTACCCTGGTGAAGATCGAATAAACG
CTCTGAGTTTTTTGAGATCTCAAATTTAAAACCGgtgaaatttaatattt
tttcatagtCAACCCGGTGGAATTCAAAACTGCaggttactgagacaggg
gtatttaAAAGCTTGTATTCATTCATTGACTATTAGTGTATAACTCTGAG
ATTTTTAAACTagagttattgattttttttttcaaaactaaaacTCCACA
TTACGTCCAAAGTACATTACCGATGTTTATGATAACTAGTAATTCTTTTT
TAAGTGAAGGAAGCATGCTGTCccaaaaatagtatttaaacaGGCAATTG
CACCTGCGCTTCCCTGTTCATTTATTGTACCAAAGGGAAAAACAAAATGC
CCTGACTGACTGGGAATAagactttgttgtttttaatgTTGCATATCTAC
AGAATTTACCCATTGTCCTATGATTATGTTTAAGGTAATAGCCCTGTAAC
AGTTCAAAGAgcaattgaaactttttttaaagtgcTGAAAGTACGTGGAG
CTGTAAGATTCTTTTTTAGTACTCCGACTTTCAGCCCTATTAAAATGCTA
TTAGATAGAGGGCTGAATCTGTTCTACTGCCTACAGCTAACAGTTGAAAG
TAGGATGGAGTATAAACAAAAAGTAAACATTGCATAATTTATTCGACGCC
ATTCCTCCTCTTGTTCCCCAGGTTACTAGTAAAAATTAGcataaattaac
ataaatttACGTCACTTTTTGTTTCAATACAAAAAGCCTTTCTCAATAGG
TCTGTGATGAAAGGgaacttttttaaataattaaaaaattttcaacgaAT
GAGTGACGTCTGAGAACAATAGCTCTATTGTTATGCTACCCCCGTGATTG
AGTAAGAAATGAAGGAATAGTATATAGGTTCGCAGCTTCTGTTTCTCAGC
AGCTTATATATATCTTTCTCTTTCTCTATACTCTAGAAAACTCAAGACGA
ACGTAGGACAGAAGCCTATCGTATAGTAAGACAGAGATTGTTTTCGagaa
aaattatctaaaaatgGCTGACGTTGTAAATATGAATGAATTTAATGAAC
AATTTGCAGTGAACTTTAATACTGAAGAAGCAAAAATTGCGAAAGAAGTC
GCACAACAATTTGTTGTCAAACTGTCTGGTGGATTATTAAAAACGACTCG
AAGAGAGACAGAAGTTATGTTAAAATTAGTTGCAGACGCGAATCCTCAAC
AAGTTGAACAATTATCAAATTTAGTGAGTGGTATCAAATTTACAGAGGAA
AATGGATATCGTACTCTAATGCGCATGTGCGAATCTTTATTTGGTACTGG
GATTAATTGGGGACGAATTATTACTTTGTTTTTATATGTATCGCTACTGA
TAGACGATTTACACAAAGCTGGTAAAGATACTTTTAATGATAGAATTGGA
CATTGGTTAGGTTGTTGTATTGCTAAGCAAGCTCCATGGATTAAAGAGAA
TGGCGGATGGGTAAgtcatcaaaagttttctatAGGAAACCTTCTTATTT
TGATTTGGATAATCGAGGAAAGATGTCCCATAGAAAACACTGTTATTTGT
GTCTGGTGTCATCAAGTTTTAAATGATGCCTTGATTATTCATACCATATT
AAGCGGCCAAAATCTGAAGGAAGAGGAAGAGGAAatatctgattttgaaa
aaaaaacattaaaaaacaaaaaaaaaatgattttaagcaCATATTCTTAT
AAGATTGGGACATGAATTTTATAAATCAGTCTGTGTTTAGCACCGGGGTA
GCACCCAAAGACCTAAATGAGGCGTTTTTTGCATGTAAACATGATACGGC
ATGAAAACTCCAAATGTTTACTACTGGTCTTAtagtaagaaaaaaaaact
tgatatgaaaaaatgatatttaCTCAAAATACAGTTGATGTGTAGTAAAT
GTATTCTTGAATCAATACCTAAAATAAACAGTTGCCTTTTATTTTCCCTG
TGTCTCATattttttctcatattttcaTCTAAGTTTTTCAAGGACATATA
ATACAGACGAGGAAGAGTGAAAAGAACTCCGCAATGGAGAGCATACCTTC
GAAAgaggagaaaaaaaacatcctCTACAATTTGAAACCGCAACCGGAGC
TATCGAATTTTGTTATAGACGGCACCCCGTTGTAAAATGACGACGTACTT
TTTCGGTTCCGTACAGATTTCTTTTCTATTGTATTAATGGGGTGCGGAAA
TATGTTGTTGCTAGGCAACATTGTAATTGCGTTGTGTGGTACTTAGCGTA
TCACCGTCATCGatagaaagtattttttctACTGCCTATATTACAAATCT
TACATAATTACCAAGTGATTGGGTGAAATATTGACATAATTTAACATTCT
TTCAAAGTTATGGTATTTTTCATAAtaaaaaattgtacaaaatcaaaaca
agagatTCTTATGAAGTTACTTTTACATCATAACGTCGCCAGATTAAGCA
TAAAGTAATACGGCTTAGCTATGATGATCTGTATATGGGTTCATTGTACA
AAAACTCTTTTAAGAAAATGCAGTACAAAGTTTTGACCTTTATTTATAAC
GTCTTTTGAATGTAAAATTGATAACCTCAAAACTacgtttattaaaaaaa
aatgaagattccCGAAAAAAGCTATTTTTCACTTGCTGGTGAGAACTAAA
ACAGTTCATTTCCAGATTTTCTTGTTATAACTTTTGTTACAGAAAACacc
aaatatttttcatttacaaggcaaaatagaaaattattttttcaaacgaT
ATAAGGTGTAAAGTTTTTCGACTATTTTCGTATTTCTAAtacataatatt
tttcaaaattggtgTTTTTTAGCTGGCACTAGATGATTAGACTAAAAAAA
TATTATGTTGATCTCAATAAAACAAAGTTCACTTCAAAATcatatgagca
aaaaaaatacaaaaaaaacagGCAATAAATTTACTAGTCCAAAAATGACG
CAAAAAATGTCATTTGTCAACCTTTCTgggaaaagaaaaattcttttttg
tcgttttcTCAAATAGCACTGGAAACCAAATCAAATTGTCAAtatcaaat
tttgatcaaatttctcTGGCattaaaatgagaaaaaaatgtacaagTAAT
CAGAGATATATCATTATCTCAAATTCCAAACATTTTTGACCAACCAAATT
TGAATATGAGCATCATGTGACTTTTATCTCCAATTTCTATTGGTTCAGTA
AAAAAGGTGTGTATTTAAAGTTATATTACTGGTTATAATTCATCAAAAAA
AGTATTATAGCTGTTTTTGAGTGGTTCAAGGTCTTGACCGTCTCTAGGTC
CCTCCATAGACAATTCATAAAAATTAATCaccaattttttatctaaatat
TTATCAAGCACTTGAAATCAGTCATATGCAATGAGAAGTAATTACCTTGT
AGAGATAacgaaattcaattttaaaacctCTTAATCATTTCCCATAAGGT
AAGAAAATTTAGTGGGCTGGTTTCTTTACTATACTTCCTTAGTATGCACT
AAAGTATAGATTAGTCGAAGTTCTATTTCTGACTCTCTTAAGAAAAGTGA
CTCATTTCTTCTCACATATCTTTATATCTTGACataaaagaagatgaaaa
tgaagaatagacttaaacatttattttgattAGACGTCCTTTGCCTCACC
TCACAAgcctttcaaaaaagaaaattgattatAAGAAAAAGATAAATGAT
TATCAAAAAGTTGTAAAACCTTAGAAAAAGACATCATCAGAACTTAAAAG
GAAAGTATTTCAACAGGAAAAAAATACATTATACTCCAATGTTGTTGACA
TGTCTACGATATAGACTGGCGATAAATCattgatgtttttttctttagtt
ttccttaattttccttttctcATACACTTGTTCTTCTTTCTTCCTCGTTT
GCTTCAGTTTTTAtcgcttataaaaaaaggatatttgaaagattttcctc
ATCCTCTTCTTCTCATCTTTTTAATCCAGATGGttttcagaatcttcatt
ttaaagCATGAGTCATGTTAACAACAAAGTCTCGATTAAGAAATTGAGTA
TCTCTCCACTTTAATTTCTCAAATCCAGTCCAAACATTTGTAAATATTAC
TAAATCTAAGTGCGCTCACTTTCTCGCCTCAAAAAGCTTTATATGAAAAC
ATCAATACTTGAGATAGCTTCAATATATtcaaaattaacttttattcaat
tttataGGCTGCATTCCTTTCATCTATGGGTGGTGCCAGTGAACTTAAAG
ATACAGTCTTCAAAGGTCTCTTCAATGTCACTCTTGGCCTTGGTACGATA
GCTGCAGCTCTTTACATCAAAGGACGTTGAACTGGAGCTTCATCCCTGGG
AGATGGGTTTGGGAATCCGTGGAGTAAACTGTTGAAAGGGTGCTGCAGCA
AAAGCCAGCTCTTGGACTCGTGGAGATTTACGAGGAATTCATCAGTTTTT
TCAGATGGAAACCAAAAAATCAAGCACCATCTGAGCTAGATTTCACTAGA
TTGGTAATATCTACTGCTAACACGAGACTGGTTTTTGAATTGACAGAAAC
AAAACAACTAACattgaaaagtttcatttcTCTACAAGATTGCCTGCGAA
TTTTCATTTCTTAATAATTTTTACGAAAATATTGGTGTGAAAGTTTGGTT
TGCGTGGTGGTATTGAATACAAcatacaaaatagaaaatttcattacgTT
TGGATTGGTTGGTTACATActggtttttattttgttattactAACTGACA
GCCTTTGGCTGATAGACATTGAATATGGCTGGTCCAAAGGATTCAATACA
ACATCAGATTGCTATTCGGAAATCTTAGAAGGAGAGAATGGCATGagaaa
attcatcaaagacCTGCTAATTTTTAGTTGATGGGAAAAACATTACAAAC
TTTctagaaaagtcatacaaacaGAAAGAATGTTGATTATTTATCAATCA
AAAAGCTGTATCTGTATTTAGATTTTGCTATTCCCAGCCTACTAAATCTA
CTATTAgttcattttttatcaattttaaattCTCTATTGAAAAATACTGC
TATTTATTACTATGCCCCCTTTATCCCCCTGTAAATATTAGATAATATAA
AAAGGACATTTTTTGTGATGGTATTACTCTCTGAGTTGGTATTTTGATTT
AATATTGATGTATGAAACCGACTTTGAAAGGTATGCGATTTGATCCTATT
AAATTTGCAATATCGATTGACAGTCAAAAGTAGTCAATGTCAATATCAAA
ATACCAATAAACTGAGAATACTGAGGGTGCGAGTTGAGTGAGAGTTTGTG
TGTAAATTTTATTCATGATGAGAGAAGGGTTCGACTTTTAACCCcagata
aagattttattttatttagaaaacaaaagaattgtaCATAAGTAAATAGA
GATAACTAAAAATAAATCTTAACAAGAAGTTAAACCgttgtcattatttt
tatttCCCAATACAAAAAGATTGTGTTTCAAACAATAAAGATGTAATTGT
G
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027003-exon-sc0000600-1491911889:27881..27935 | TCONS_00027003-exon-sc0000600-1491911889:27881..27935 | Clytia hemisphaerica | exon |
| TCONS_00027003-exon-sc0000600-1510915933:27881..27935 | TCONS_00027003-exon-sc0000600-1510915933:27881..27935 | Clytia hemisphaerica | exon |
| TCONS_00027003-exon-sc0000600-1575043694:27881..27935 | TCONS_00027003-exon-sc0000600-1575043694:27881..27935 | Clytia hemisphaerica | exon |
| TCONS_00027003-exon-sc0000600-1491911889:31817..32340 | TCONS_00027003-exon-sc0000600-1491911889:31817..32340 | Clytia hemisphaerica | exon |
| TCONS_00027003-exon-sc0000600-1510915933:31817..32340 | TCONS_00027003-exon-sc0000600-1510915933:31817..32340 | Clytia hemisphaerica | exon |
| TCONS_00027003-exon-sc0000600-1575043694:31817..32340 | TCONS_00027003-exon-sc0000600-1575043694:31817..32340 | Clytia hemisphaerica | exon |
| TCONS_00027003-exon-sc0000600-1491911889:35088..36381 | TCONS_00027003-exon-sc0000600-1491911889:35088..36381 | Clytia hemisphaerica | exon |
| TCONS_00027003-exon-sc0000600-1510915933:35088..36381 | TCONS_00027003-exon-sc0000600-1510915933:35088..36381 | Clytia hemisphaerica | exon |
| TCONS_00027003-exon-sc0000600-1575043694:35088..36381 | TCONS_00027003-exon-sc0000600-1575043694:35088..36381 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000600 | supercontig | sc0000600:27881..36381 + |
Blast
The following BLAST results are available for this feature:
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