TCONS_00027006 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027006
Unique NameTCONS_00027006
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length691

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027006 ID=TCONS_00027006|Name=TCONS_00027006|organism=Clytia hemisphaerica|type=transcript|length=691bp
ATAACTTTGACTTATATTTTAAGAGTACATGATGACTATAACCAATTAAA
AGATCAACTCATTTATAGCAACGTTAATAATAAAACACTGAAAGTATTGA
AGTACAAACTGGAGcatgatttcatcaaaatcgaTATCCAAGAAACTGCC
ATAAATCAACATACTGAATACCACATGTATCCGGTCAAGAAACCAAATCC
GGAAGGACCAGAATTCCGGAAATATGATCCCGTTAAAAGTCAATTCAATA
TTATGATGATTATGTTGGATTCAGTATCTCACGCATGCGCACAACGTTAT
ATACCGAAAACGTacaaatttcttcaaaacaacCCTTACACTACAATCAT
GGATGGTTACACTATCGTTGGAGATGCCACTACACCACAATTATCTGCTA
TCATGTTTGGTAATCAACCAAGTGGTTTAAAACCTGAAGGACGCCGTGGT
ATCAGAGGTTCTCGGCGTATCGATTCATGGCCTTCAATTCTAAAAGAGTT
GACCAAGAATGGGTATGCCACAGTTCATTCGAGTGATGAGCCACCTATTA
ATGCTTTCAATTTCCGGTTAAGAGGATTCAATAAGCAACCAACGCTGAAG
TATCTGCGCACTTGGTGGCGCCAGACGGATGATTTgcagaaaatcaaaaa
acataGATCAAAAACCTGCCCCATCACATTCGGGATGGATT
Run BLAST on NCBI

protein sequence of TCONS_00027006-protein

>TCONS_00027006-protein ID=TCONS_00027006-protein|Name=TCONS_00027006-protein|organism=Clytia hemisphaerica|type=polypeptide|length=230bp
ITLTYILRVHDDYNQLKDQLIYSNVNNKTLKVLKYKLEHDFIKIDIQETA
INQHTEYHMYPVKKPNPEGPEFRKYDPVKSQFNIMMIMLDSVSHACAQRY
IPKTYKFLQNNPYTTIMDGYTIVGDATTPQLSAIMFGNQPSGLKPEGRRG
IRGSRRIDSWPSILKELTKNGYATVHSSDEPPINAFNFRLRGFNKQPTLK
YLRTWWRQTDDLQKIKKHRSKTCPITFGMD
Run BLAST on NCBI

transcript from alignment at sc0000600:100148..102654+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027006 ID=TCONS_00027006|Name=TCONS_00027006|organism=Clytia hemisphaerica|type=transcript|length=2507bp|location=Sequence derived from alignment at sc0000600:100148..102654+ (Clytia hemisphaerica)
ATAACTTTGACTTATATTTTAAGAGTACATGATGACTATAACCAATTAAA
AGATCAACTCATTTATAGCAACGTTAATAATAAAACACTGAAAGGTAAGC
ATGCCATCCTATTATTTAGGCCACTGACCTTTGGACCCTATGGAcgaagt
ttctcaatcccgtatggtccagggatatataataAAGGTCAGGTGATTTA
GACCTGCTGTTTACAGACCAGGtgattttaggcaaaattttgTTCCTAGT
GGAAAATTATGctagaatttttatccctgctgaaaataatcaaataaaac
gaTTCCCAATGCAAAGTATCGCCCTATTTTTTCCACATCCACCCCCTATA
AATTTTAGAAGGATAGAATTCAAATACCAAGCTATAAAAAattgaacacc
cctgtctcagtgccccggtggcatgatttcagtacatgatttttNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNca
gtaatcaaatttttattgcactcatttgtgaattgagatataaattgaat
aaagacagcgacaataaaaaacagttcttgaattcccaagccatttagga
tgattgagacaggggtgtaattgaGAATATCAATTtcaatcgagtttcag
tccgttatttttactccCACTGACTGATGaaattctaccgggtctgtTAG
AACATTAACTAATAGACGGTATCACATATACCCTTGTCTCATATTTAGGA
ATCATTGTGAATCAGGATAGACCATAATAACGACTTCATACATTCGTCAG
TTCAGTTCGAGTACGACAAAAGATACAGTGATTTGAAATTGGTAAACATG
AAAATATCATTAAGGACATTCCACTTTTCCTTTCTGCCAATTCTTTAGAT
ATGGAGCTTGGTGTACTAAGCTGATCCCGAATCAACAAGAGAGATCTAAT
CAAatatttgttgttttctttcttATAGTATTGAAGTACAAACTGGAGca
tgatttcatcaaaatcgaTATCCAAGAAACTGCCATAAATCAACATACTG
AATACCACATGTATCCGGTCAAGAAACCAAATCCGGAAGGACCAGAATTC
CGGAAATATGATCCCGTTAAAAGTCAATTCAATATTATGATGATTATGTT
GGATTCAGTATCTCACGCATGCGCACAACGTTATATACCGAAAACGTaca
aatttcttcaaaacaacCCTTACACTACAATCATGGATGTAAGGAAATCT
ACAACCTCgatcaatcagtaacgtaaataaagcctgggatacacggggac
gaggttgggaaATATAAATCTAATagttttttagctttttgtgaaaattc
tgAATGTGCCCCCGCAAAGCTGTATTCTAAAGCTTATAACCaacttgtct
cccgaatagacggggggagggggtccgaataagcaggggggtaggaaaat
tttctaaattctaataagcggggtggatggaataagaggggggatAATTT
GAAGACATAAACAACAAAAGTGAAAcaaacaaatgaacacgtaaaataag
aaccaatactaacaaaaaggaaaatttaacaagtttaaggtctatctaca
ctgtaatgaaaaatttaattattcaaatttaattagcgggggggggggtc
ttaataagagcgggggggatggattttttttgctcttaataattagcggg
ggggacgtctattcgggagacaaaaGTAGTACCTAGACATTTACCTGTTT
CTGTTGTTTTGCTTAACAAAtcatttcatcattttcttgagTTCAGTGTC
TCGGTCAAGGACCTTCTTTATcgtttcatttatttactttacaTTCCACA
GTCTACTGTTTCTTGAAACTAGTTGTCtagtatacaccttttcgaccgta
gccgccaattgccgcacaGGCCTTTTTTCGTCCACTAAAACCCTCCCAGT
GTGTCAAAGAagaattggatcgagtttagggggataattaaatagtTGCC
TGACCACGCGACCAtgcgaaaaggtgtattgtgcTAGAGAACCTTTTTGT
ACGTTTGTCTCATTTTTTAGGGTTACACTATCGTTGGAGATGCCACTACA
CCACAATTATCTGCTATCATGTTTGGTAATCAACCAAGTGGTTTAAAACC
TGAAGGACGCCGTGGTATCAGAGGTTCTCGGCGTATCGATTCATGGCCTT
CAATTCTAAAAGAGTTGACCAAGAATGGGTATGCCACAGTTCATTCGAGT
GATGAGCCACCTATTAATGCTTTCAATTTCCGGTTAAGAGGATTCAATAA
GCAACCAACGCTGAAGTATCTGCGCACTTGGTGGCGCCAGACGGATGATT
TgcagaaaatcaaaaaacataGATCAAAAACCTGCCCCATCACATTCGGG
ATGGATT

Coding sequence (CDS) from alignment at sc0000600:100148..102654+

>TCONS_00027006 ID=TCONS_00027006|Name=TCONS_00027006|organism=Clytia hemisphaerica|type=CDS|length=2070bp|location=Sequence derived from alignment at sc0000600:100148..102654+ (Clytia hemisphaerica)
ATAACTTTGACTTATATTTTAAGAGTACATGATGACTATAACCAATTAAA
AGATCAACTCATTTATAGCAACGTTAATAATAAAACACTGAAAGTATTGA
AGTACAAACTGGAGcatgatttcatcaaaatcgaTATCCAAGAAACTGCC
ATAAATCAACATACTGAATACCACATGTATCCGGTCAAGAAACCAAATCC
GGAAGGACCAGAATTCCGGAAATATGATCCCGTTAAAAGTCAATTCAATA
TTATGATGATTATGTTGGATTCAGTATCTCACGCATGCGCACAACGTTAT
ATACCGAAAACGTacaaatttcttcaaaacaacCCTTACACTACAATCAT
GGATGGTTACACTATCGTTGGAGATGCCACTACACCACAATTATCTGCTA
TCATGTTTGGTAATCAACCAAGTGGTTTAAAACCTGAAGGACGCCGTGGT
ATCAGAGGTTCTCGGCGTATCGATTCATGGCCTTCAATTCTAAAAGAGTT
GACCAAGAATGGGTATGCCACAGTTCATTCGAGTGATGAGCCACCTATTA
ATGCTTTCAATTTCCGGTTAAGAGGATTCAATAAGCAACCAACGCTGAAG
TATCTGCGCACTTGGTGGCGCCAGACGGATGATTTgcagaaaatcaaaaa
acataGATCAAAAACCTGCCCCATCACATTCGGGATGGATATAACTTTGA
CTTATATTTTAAGAGTACATGATGACTATAACCAATTAAAAGATCAACTC
ATTTATAGCAACGTTAATAATAAAACACTGAAAGTATTGAAGTACAAACT
GGAGcatgatttcatcaaaatcgaTATCCAAGAAACTGCCATAAATCAAC
ATACTGAATACCACATGTATCCGGTCAAGAAACCAAATCCGGAAGGACCA
GAATTCCGGAAATATGATCCCGTTAAAAGTCAATTCAATATTATGATGAT
TATGTTGGATTCAGTATCTCACGCATGCGCACAACGTTATATACCGAAAA
CGTacaaatttcttcaaaacaacCCTTACACTACAATCATGGATGGTTAC
ACTATCGTTGGAGATGCCACTACACCACAATTATCTGCTATCATGTTTGG
TAATCAACCAAGTGGTTTAAAACCTGAAGGACGCCGTGGTATCAGAGGTT
CTCGGCGTATCGATTCATGGCCTTCAATTCTAAAAGAGTTGACCAAGAAT
GGGTATGCCACAGTTCATTCGAGTGATGAGCCACCTATTAATGCTTTCAA
TTTCCGGTTAAGAGGATTCAATAAGCAACCAACGCTGAAGTATCTGCGCA
CTTGGTGGCGCCAGACGGATGATTTgcagaaaatcaaaaaacataGATCA
AAAACCTGCCCCATCACATTCGGGATGGATATAACTTTGACTTATATTTT
AAGAGTACATGATGACTATAACCAATTAAAAGATCAACTCATTTATAGCA
ACGTTAATAATAAAACACTGAAAGTATTGAAGTACAAACTGGAGcatgat
ttcatcaaaatcgaTATCCAAGAAACTGCCATAAATCAACATACTGAATA
CCACATGTATCCGGTCAAGAAACCAAATCCGGAAGGACCAGAATTCCGGA
AATATGATCCCGTTAAAAGTCAATTCAATATTATGATGATTATGTTGGAT
TCAGTATCTCACGCATGCGCACAACGTTATATACCGAAAACGTacaaatt
tcttcaaaacaacCCTTACACTACAATCATGGATGGTTACACTATCGTTG
GAGATGCCACTACACCACAATTATCTGCTATCATGTTTGGTAATCAACCA
AGTGGTTTAAAACCTGAAGGACGCCGTGGTATCAGAGGTTCTCGGCGTAT
CGATTCATGGCCTTCAATTCTAAAAGAGTTGACCAAGAATGGGTATGCCA
CAGTTCATTCGAGTGATGAGCCACCTATTAATGCTTTCAATTTCCGGTTA
AGAGGATTCAATAAGCAACCAACGCTGAAGTATCTGCGCACTTGGTGGCG
CCAGACGGATGATTTgcagaaaatcaaaaaacataGATCAAAAACCTGCC
CCATCACATTCGGGATGGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015165XLOC_015165Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027006-proteinTCONS_00027006-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027006-exon-sc0000600-1491911889:100148..100241TCONS_00027006-exon-sc0000600-1491911889:100148..100241Clytia hemisphaericaexon
TCONS_00027006-exon-sc0000600-1510915933:100148..100241TCONS_00027006-exon-sc0000600-1510915933:100148..100241Clytia hemisphaericaexon
TCONS_00027006-exon-sc0000600-1575043694:100148..100241TCONS_00027006-exon-sc0000600-1575043694:100148..100241Clytia hemisphaericaexon
TCONS_00027006-exon-sc0000600-1491911889:101226..101485TCONS_00027006-exon-sc0000600-1491911889:101226..101485Clytia hemisphaericaexon
TCONS_00027006-exon-sc0000600-1510915933:101226..101485TCONS_00027006-exon-sc0000600-1510915933:101226..101485Clytia hemisphaericaexon
TCONS_00027006-exon-sc0000600-1575043694:101226..101485TCONS_00027006-exon-sc0000600-1575043694:101226..101485Clytia hemisphaericaexon
TCONS_00027006-exon-sc0000600-1491911889:102318..102654TCONS_00027006-exon-sc0000600-1491911889:102318..102654Clytia hemisphaericaexon
TCONS_00027006-exon-sc0000600-1510915933:102318..102654TCONS_00027006-exon-sc0000600-1510915933:102318..102654Clytia hemisphaericaexon
TCONS_00027006-exon-sc0000600-1575043694:102318..102654TCONS_00027006-exon-sc0000600-1575043694:102318..102654Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000600supercontigsc0000600:100148..102654 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.0815348	0.198522	0.313749	0.946312	1.1517	0.625845	0	0.223716	0.294124	1.76229	1.16927	0.83591	0.672795	0.331531	0.339809	0.625952	0.508641	0.284663	0.520682	0.168789	0.334342	1.26443	1.1716	0.302782	0.107712	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR004245DUF229
IPR017849Alkaline_Pase-like_a/b/a
IPR017850Alkaline_phosphatase_core
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
molecular_function GO:0003824 catalytic activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027006 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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