TCONS_00027010 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027010
Unique NameTCONS_00027010
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length355

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027010 ID=TCONS_00027010|Name=TCONS_00027010|organism=Clytia hemisphaerica|type=transcript|length=355bp
TCCTAGATCTTTGCCATCACTATCGCCAAGACCTAGACTTAGTCCAAGAC
AGCCCTTCAAACCAGCTGGTGCGAACAAGCAGCAACCATACAGGTATGCT
ATCAAAAAATCTTGCAACGGATGTGCTGAAAAATCCAAGATCATTAATGA
TCAGACAGCCACCATCAAGCCTTAGAGGAAGAAAATGATAGACTTCAAAA
GACAATTAATGACGGCTTTCATCTGGATACTTATGAACCAAAGTCAGGAA
AGTTGGCACCCAAAGTGGCAGAAAAGTATATGATGACACAGCTTCATCAA
AAATGCCCAAATGTCTATCTAACACAGATTGACTTTTCTGTTTTGAAAAC
AAAGA
Run BLAST on NCBI

transcript from alignment at sc0000600:148766..149766+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027010 ID=TCONS_00027010|Name=TCONS_00027010|organism=Clytia hemisphaerica|type=transcript|length=1001bp|location=Sequence derived from alignment at sc0000600:148766..149766+ (Clytia hemisphaerica)
TCCTAGATCTTTGCCATCACTATCGCCAAGACCTAGACTTAGTCCAAGAC
AGCCCTTCAAACCAGCTGGTGCGAACAAGCAGCAACCATACAGGTATGCT
ATCAAAAAATCTTGCAACGGATGTGCTGAAAAATCCAAGATCATTAATGA
TCAGACAGCCACCATCAAGCCTTAGAGGAAGAAAATGATAGACTTCAAAA
GACAATTAATGACGGCTTTCATCTGGGTAAGTGTGCtaaccgtgaagtcg
ggtaacttgcatcagtggtggcaaacatgcatagccatcaaatgactgac
caatcaaagcagcaaaatttcaaaacaaattaactaCGCAGCCTCGCTCG
CAACtgtactctaccatttttgttttgatttaagtttgtattttaatgac
cagacaggtcagtcaattgagggctatgcatgtttgcctccactgatgca
agttatccgACTGACTTCACGGTATTATTTTATACTTTTATGAAGTTTTT
AACTTCAAAAGTTTAGCaataaatcttcaaatttttttggtttCATCCTA
AAATCTGAAGGATTTCAACTCTCATCTCACTCTAAAAGTTGATTGGTGAA
CTTTTGAACACATGCTATTCTCTTCTATAGACATACAGACGGTGAGATTC
TAAATATATATTAAATCTTGTCCCTTTTTTCTAGATACTTATGAACCAAA
GTCAGGAAAGTTGGCACCCAAAGTGGCAGAAAAGTATATGGTGAGTattg
tttaattttctttaaatgatTGGCTGGACTCTCTTTGAATAATATACTTT
TGGTAGACCTAAGTGTTGAATTTATTATGAATCCTGATAAATCATAATTA
TGAAGATAAGGTGAACATATGGATTAGGACATAATGTCTTAACTAAGAAA
CTAAAAAGAAGTATTATTATCTTTTCAGATGACACAGCTTCATCAAAAAT
GCCCAAATGTCTATCTAACACAGATTGACTTTTCTGTTTTGAAAACAAAG
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015169XLOC_015169Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027010-exon-sc0000600-1491911889:148766..148991TCONS_00027010-exon-sc0000600-1491911889:148766..148991Clytia hemisphaericaexon
TCONS_00027010-exon-sc0000600-1510915933:148766..148991TCONS_00027010-exon-sc0000600-1510915933:148766..148991Clytia hemisphaericaexon
TCONS_00027010-exon-sc0000600-1575043694:148766..148991TCONS_00027010-exon-sc0000600-1575043694:148766..148991Clytia hemisphaericaexon
TCONS_00027010-exon-sc0000600-1491911889:149450..149505TCONS_00027010-exon-sc0000600-1491911889:149450..149505Clytia hemisphaericaexon
TCONS_00027010-exon-sc0000600-1510915933:149450..149505TCONS_00027010-exon-sc0000600-1510915933:149450..149505Clytia hemisphaericaexon
TCONS_00027010-exon-sc0000600-1575043694:149450..149505TCONS_00027010-exon-sc0000600-1575043694:149450..149505Clytia hemisphaericaexon
TCONS_00027010-exon-sc0000600-1491911889:149694..149766TCONS_00027010-exon-sc0000600-1491911889:149694..149766Clytia hemisphaericaexon
TCONS_00027010-exon-sc0000600-1510915933:149694..149766TCONS_00027010-exon-sc0000600-1510915933:149694..149766Clytia hemisphaericaexon
TCONS_00027010-exon-sc0000600-1575043694:149694..149766TCONS_00027010-exon-sc0000600-1575043694:149694..149766Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000600supercontigsc0000600:148766..149766 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.236961	0	0	8.52011	9.5181	3.64362	5.55706	6.7574	5.97029	1.96952	2.71334	1.73773	3.31223	0.413947	0	1.42304	0.747889	0.258312	0.810916	0.146194	0	0.278617	0	4.17434	2.09559	0.333199	0.355599	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027010 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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