TCONS_00027022 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027022
Unique NameTCONS_00027022
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length864

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027022 ID=TCONS_00027022|Name=TCONS_00027022|organism=Clytia hemisphaerica|type=transcript|length=864bp
CTGATGATTAAGTAATCAACTAATGTATTAAACTGTTTAATCCTTTTTCT
ACTGCAGCAATCGAAAAGATAAAGGTTACAACACAAAACCATTTGATGTG
TGTTTTGCATAAGAAATTCAAGATTTTTCGAAATGAACTTGCTGATCTGT
GCTCTGGAAAGTTGAATGATAATGTCATAGATGCATATATGAATTGTTTA
GAATTGGAAGCAAACAAAAGCACAAAGACGAAAAAGGAAAATCGAATCAT
GATATTTGAAACCCCTTACATTACAAGGATTGTGCAAAGACAAAACAAAA
TTTGTATGAAAAGAAAAAAACAGTTGCTTGAATGTGAAATGGCTTTGGGG
ATCTACAACAAAACAGGAGATCACTGGTGTTTATTGGTTATTTTACCACC
AAAGAAAACATTGTATGCCATCAATCCGTTAGGTTGTGACCAATCTTTCA
TTGAAGAACGCTGGAGGAAAATAATGCAAGCAAATGATATTGCAGGTGAA
TGGAAAGTGGAGAAACAGGAACATGCAAGACAAAATGATGTTATTTCGTG
TggagttttttgcttaaaagtaAGAATTTATATATGTCTATTGCATGAAT
TCCATGAGAAAATTAACATctaggtcaaaatttcaaattcagaaataaca
taagttttcattttctcttgaatAAACATATGTTGAAGTGTGAGAAtcca
gaaaatctttctttaaagtCCATTTTTCACGCTTCTGTGCTGGGGTGAAA
GCTTTatataatacaaaaaaatacaaaattgcttgaaaaaaccaagaact
ttgccagaaacttttttcatccaaatatGATTGTATCAGTACACAAATCT
GTGATAGAGTACTG
Run BLAST on NCBI

protein sequence of TCONS_00027022-protein

>TCONS_00027022-protein ID=TCONS_00027022-protein|Name=TCONS_00027022-protein|organism=Clytia hemisphaerica|type=polypeptide|length=175bp
MCVLHKKFKIFRNELADLCSGKLNDNVIDAYMNCLELEANKSTKTKKENR
IMIFETPYITRIVQRQNKICMKRKKQLLECEMALGIYNKTGDHWCLLVIL
PPKKTLYAINPLGCDQSFIEERWRKIMQANDIAGEWKVEKQEHARQNDVI
SCGVFCLKVRIYICLLHEFHEKINI
Run BLAST on NCBI

transcript from alignment at sc0000600:136632..138295-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027022 ID=TCONS_00027022|Name=TCONS_00027022|organism=Clytia hemisphaerica|type=transcript|length=1664bp|location=Sequence derived from alignment at sc0000600:136632..138295- (Clytia hemisphaerica)
CTGATGATTAAGTAATCAACTAATGTATTAAACTGTTTAATCCTTTTTCT
ACTGCAGCAATCGAAAAGATAAAGGTTACAACACAAAACCATTTGATGTG
TGTTTTGCATAAGAAATTCAAGATTTTTCGAAATGAACTTGCTGATCTGT
GCTCTGGAAAGTTGAATGATAATGTCATAGATGCATATATGAATTGTTTA
GAATTGGAAGCAAACAAAAGCACAAAGACGAAAAAGGTTTTCATTTCTTA
AAGAATAAAAATACTTTTATTCCTTCTTCACCCTAACTTTAATTTTTTTG
TTTCAGAAGATTGGAGTCGTTGTCTACTAAAGCATTTTACTGATTCAAAT
AATATCCTTTTTTGTTTTATTTAGGAAAATCGAATCATGATATTTGAAAC
CCCTTACATTACAAGGATTGTGCAAAGACAAAACAAAATTTGTATGAAAA
GAAAAGTAAGCATTTTTCTGAAATCAGCCACTATCATTCATTATATGATC
ATCACAAAGATCAAGAAAATACTGATGATTTTAATTGTATTATACATTAT
TGAATTGTATTTAATGTGCACCACCTTACCTCTTATTAATCATGGTGTGA
AGATAGTTAGAGAGTGTCATAAAGATATATTTTATTTCTGAAATTTTAGA
AACAGTTGCTTGAATGTGAAATGGCTTTGGGGATCTACAACAAAACAGGA
GATCACTGGTGTTTATTGGTATATTGTTATCTGACTTTAGAAATGCATTT
GCATTTTGCAACCTAATATTTCGTAAATTAGAAATACCTTCTAATAACGT
CTAGTGCCATTTCTAAAAATTGGATTCAAGGATGAAATAATTTCCAAGTG
TGAATTCTCTAAAAGTTTGGATGAATACAAACATTTTGTCAGTTTCTTAG
GAAGTTGTCAGGTTTATGATAAGTTCAATAGAACATCTTTGAAAGAATAC
CTATCATTTACTTTTCAACTTTCAGGTTATTTTACCACCAAAGAAAACAT
TGTATGCCATCAATCCGTTAGGTTGTGACCAATCTTTCATTGAAGAACGC
TGGAGGTAAAATACATTCAATTTTGTACTTAAAAACTGAAATAACCTATA
TACCGATTACATCATCCCATTAATACCATGGTATAAACGCTCAATCTAAA
GTCATTTGATTTAAGATTTGATGTATGCTTGTTTTTTGTTCTCCAGGAAA
ATAATGCAAGCAAATGATATTGCAGGTGAATGGAANTTTGATGTATGCTT
GTTTTTTGTTCTCCAGGAAAATAATGCAAGCAAATGATATTGCAGGTGAA
TGGAAAGTGGAGAAACAGGAACATGCAAGACAAAATGATGTTATTTCGTG
TGGAGTTTTTTGCTTAAAAGTAAGAATTTATATATGTCTATTGCATGAAT
TCCATGAGAAAATTAACATCTAGGTCAAAATTTCAAATTCAGAAATAACA
TAAGTTTTCATTTTCTCTTGAATAAACATATGTTGAAGTGTGAGAATCCA
GAAAATCTTTCTTTAAAGTCCATTTTTCACGCTTCTGTGCTGGGGTGAAA
GCTTTATATAATACAAAAAAATACAAAATTGCTTGAAAAAACCAAGAACT
TTGCCAGAAACTTTTTTCATCCAAATATGATTGTATCAGTACACAAATCT
GTGATAGAGTACTG

Coding sequence (CDS) from alignment at sc0000600:136632..138295-

>TCONS_00027022 ID=TCONS_00027022|Name=TCONS_00027022|organism=Clytia hemisphaerica|type=CDS|length=2640bp|location=Sequence derived from alignment at sc0000600:136632..138295- (Clytia hemisphaerica)
GAAAATAATGCAAGCAAATGATATTGCAGGTGAATGGAAAGTGGAGAAAC
AGGAACATGCAAGACAAAATGATGTTATTTCGTGTGGAGTTTTTTGCTTA
AAAGTAAGAATTTATATATGTCTATTGCATGAATTCCATGAGAAAATTAA
CATCTAGGTTATTTTACCACCAAAGAAAACATTGTATGCCATCAATCCGT
TAGGTTGTGACCAATCTTTCATTGAAGAACGCTGGAGAAACAGTTGCTTG
AATGTGAAATGGCTTTGGGGATCTACAACAAAACAGGAGATCACTGGTGT
TTATTGGAAAATCGAATCATGATATTTGAAACCCCTTACATTACAAGGAT
TGTGCAAAGACAAAACAAAATTTGTATGAAAAGAAAAATGTGTGTTTTGC
ATAAGAAATTCAAGATTTTTCGAAATGAACTTGCTGATCTGTGCTCTGGA
AAGTTGAATGATAATGTCATAGATGCATATATGAATTGTTTAGAATTGGA
AGCAAACAAAAGCACAAAGACGAAAAAGGAAAATAATGCAAGCAAATGAT
ATTGCAGGTGAATGGAAAGTGGAGAAACAGGAACATGCAAGACAAAATGA
TGTTATTTCGTGTGGAGTTTTTTGCTTAAAAGTAAGAATTTATATATGTC
TATTGCATGAATTCCATGAGAAAATTAACATCTAGGTTATTTTACCACCA
AAGAAAACATTGTATGCCATCAATCCGTTAGGTTGTGACCAATCTTTCAT
TGAAGAACGCTGGAGAAACAGTTGCTTGAATGTGAAATGGCTTTGGGGAT
CTACAACAAAACAGGAGATCACTGGTGTTTATTGGAAAATCGAATCATGA
TATTTGAAACCCCTTACATTACAAGGATTGTGCAAAGACAAAACAAAATT
TGTATGAAAAGAAAAATGTGTGTTTTGCATAAGAAATTCAAGATTTTTCG
AAATGAACTTGCTGATCTGTGCTCTGGAAAGTTGAATGATAATGTCATAG
ATGCATATATGAATTGTTTAGAATTGGAAGCAAACAAAAGCACAAAGACG
AAAAAGGAAAATAATGCAAGCAAATGATATTGCAGGTGAATGGAAAGTGG
AGAAACAGGAACATGCAAGACAAAATGATGTTATTTCGTGTGGAGTTTTT
TGCTTAAAAGTAAGAATTTATATATGTCTATTGCATGAATTCCATGAGAA
AATTAACATCTAGGTTATTTTACCACCAAAGAAAACATTGTATGCCATCA
ATCCGTTAGGTTGTGACCAATCTTTCATTGAAGAACGCTGGAGAAACAGT
TGCTTGAATGTGAAATGGCTTTGGGGATCTACAACAAAACAGGAGATCAC
TGGTGTTTATTGGAAAATCGAATCATGATATTTGAAACCCCTTACATTAC
AAGGATTGTGCAAAGACAAAACAAAATTTGTATGAAAAGAAAAATGTGTG
TTTTGCATAAGAAATTCAAGATTTTTCGAAATGAACTTGCTGATCTGTGC
TCTGGAAAGTTGAATGATAATGTCATAGATGCATATATGAATTGTTTAGA
ATTGGAAGCAAACAAAAGCACAAAGACGAAAAAGGAAAATAATGCAAGCA
AATGATATTGCAGGTGAATGGAAAGTGGAGAAACAGGAACATGCAAGACA
AAATGATGTTATTTCGTGTGGAGTTTTTTGCTTAAAAGTAAGAATTTATA
TATGTCTATTGCATGAATTCCATGAGAAAATTAACATCTAGGTTATTTTA
CCACCAAAGAAAACATTGTATGCCATCAATCCGTTAGGTTGTGACCAATC
TTTCATTGAAGAACGCTGGAGAAACAGTTGCTTGAATGTGAAATGGCTTT
GGGGATCTACAACAAAACAGGAGATCACTGGTGTTTATTGGAAAATCGAA
TCATGATATTTGAAACCCCTTACATTACAAGGATTGTGCAAAGACAAAAC
AAAATTTGTATGAAAAGAAAAATGTGTGTTTTGCATAAGAAATTCAAGAT
TTTTCGAAATGAACTTGCTGATCTGTGCTCTGGAAAGTTGAATGATAATG
TCATAGATGCATATATGAATTGTTTAGAATTGGAAGCAAACAAAAGCACA
AAGACGAAAAAGGAAAATAATGCAAGCAAATGATATTGCAGGTGAATGGA
AAGTGGAGAAACAGGAACATGCAAGACAAAATGATGTTATTTCGTGTGGA
GTTTTTTGCTTAAAAGTAAGAATTTATATATGTCTATTGCATGAATTCCA
TGAGAAAATTAACATCTAGGTTATTTTACCACCAAAGAAAACATTGTATG
CCATCAATCCGTTAGGTTGTGACCAATCTTTCATTGAAGAACGCTGGAGA
AACAGTTGCTTGAATGTGAAATGGCTTTGGGGATCTACAACAAAACAGGA
GATCACTGGTGTTTATTGGAAAATCGAATCATGATATTTGAAACCCCTTA
CATTACAAGGATTGTGCAAAGACAAAACAAAATTTGTATGAAAAGAAAAA
TGTGTGTTTTGCATAAGAAATTCAAGATTTTTCGAAATGAACTTGCTGAT
CTGTGCTCTGGAAAGTTGAATGATAATGTCATAGATGCATATATGAATTG
TTTAGAATTGGAAGCAAACAAAAGCACAAAGACGAAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015177XLOC_015177Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027022-exon-sc0000600-1575043694:138060..138295TCONS_00027022-exon-sc0000600-1575043694:138060..138295Clytia hemisphaericaexon
TCONS_00027022-exon-sc0000600-1575043694:137841..137921TCONS_00027022-exon-sc0000600-1575043694:137841..137921Clytia hemisphaericaexon
TCONS_00027022-exon-sc0000600-1575043694:137578..137646TCONS_00027022-exon-sc0000600-1575043694:137578..137646Clytia hemisphaericaexon
TCONS_00027022-exon-sc0000600-1575043694:137241..137320TCONS_00027022-exon-sc0000600-1575043694:137241..137320Clytia hemisphaericaexon
TCONS_00027022-exon-sc0000600-1575043694:136632..137029TCONS_00027022-exon-sc0000600-1575043694:136632..137029Clytia hemisphaericaexon
TCONS_00027022-exon-sc0000600-1510915933:138060..138295TCONS_00027022-exon-sc0000600-1510915933:138060..138295Clytia hemisphaericaexon
TCONS_00027022-exon-sc0000600-1510915933:137841..137921TCONS_00027022-exon-sc0000600-1510915933:137841..137921Clytia hemisphaericaexon
TCONS_00027022-exon-sc0000600-1510915933:137578..137646TCONS_00027022-exon-sc0000600-1510915933:137578..137646Clytia hemisphaericaexon
TCONS_00027022-exon-sc0000600-1510915933:137241..137320TCONS_00027022-exon-sc0000600-1510915933:137241..137320Clytia hemisphaericaexon
TCONS_00027022-exon-sc0000600-1510915933:136632..137029TCONS_00027022-exon-sc0000600-1510915933:136632..137029Clytia hemisphaericaexon
TCONS_00027022-exon-sc0000600-1491911889:138060..138295TCONS_00027022-exon-sc0000600-1491911889:138060..138295Clytia hemisphaericaexon
TCONS_00027022-exon-sc0000600-1491911889:137841..137921TCONS_00027022-exon-sc0000600-1491911889:137841..137921Clytia hemisphaericaexon
TCONS_00027022-exon-sc0000600-1491911889:137578..137646TCONS_00027022-exon-sc0000600-1491911889:137578..137646Clytia hemisphaericaexon
TCONS_00027022-exon-sc0000600-1491911889:137241..137320TCONS_00027022-exon-sc0000600-1491911889:137241..137320Clytia hemisphaericaexon
TCONS_00027022-exon-sc0000600-1491911889:136632..137029TCONS_00027022-exon-sc0000600-1491911889:136632..137029Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027022-proteinTCONS_00027022-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000600supercontigsc0000600:136632..138295 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.90804	1.80586	0.634666	0.314008	3.60607	2.70836	2.19068	2.57556	1.51741	2.71793	3.86513	2.13619	1.328	1.61913	1.8677	1.77184	3.90669	2.56264	1.64746	2.19565	3.33999	3.65893	1.3169	1.96592	1.54783	1.97027	2.31067	1.01232	2.03088	1.77626
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003653Peptidase_C48_C
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
Vocabulary: Molecular Function
TermDefinition
GO:0008234cysteine-type peptidase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
molecular_function GO:0008234 cysteine-type peptidase activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027022 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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