TCONS_00027023 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027023
Unique NameTCONS_00027023
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1734

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027023 ID=TCONS_00027023|Name=TCONS_00027023|organism=Clytia hemisphaerica|type=transcript|length=1734bp
tatctttccaacgataccaaatttataaagattgaagaattccttcaaaa
gttataggtaaaagaaaaaagagtgcacacttatcgtgaacagactttat
tTATAAATCAACCTTTTCGCATCTTCAGAAACTATCCAAAGGCCTTGATT
CAACTGCAAGTGGTGTCATTGCACTTCTGGAATTGGCGCGATTGTTTAGC
AATTTGTACGAGAAAAGATCAGTTCAGCCAAAATACAACATGCTGTTTTT
ACTGTCGGGCGGTGGCAAATTCAACTACCAAGGAACCAAGAAATGGATCG
AAGACAATGTCGAATCGTCAGAATTCAGTTTGTTAGCAGAAGCAGAGTAC
GTCCTTTGTATTGATGCCATTGGTAAGGGAACAGACCTTAATCTTCACGT
CTCCAAACCACCCAAAGAAGGAACACAAGGTTTCGCATTAGTACAAGACT
TGCAACAGGTGATGTCTGAACAGTTCTCCAACAGCAAATTGAATGTCATT
CACAAGAAAATCAACATGGCGGAAGAGATGTTACCATGGGAACACGAGAG
ATTCTCATTGCGTCGCGTGCCAGCTGGAACCATCTCCCATCACTCAAAGC
CAACACACAGAGGCTCCATCTTTGATAATGAaATCAATTCAAAAGAATTA
AAGAAGAACATTAAAGTGATAGGAGAAGGTTTAGCAAGACATATTTTCAA
CTTAACTGGAAAGGGATTTTCAAATCGTGTAGAAGTTTTCTCAGGTGGTC
TGAGCGTAGACAATGATCATATTGATTCATGGATCGAACATTTATCCAAA
GAACCGAGAAGTCAACAACTTATTACTAAAGATCATAAACTACTCGCTGC
TTTCGAAGAGACAATGAATCGATATTTAACCGATGTTCGTCGAATTGCAA
GTAAAGCCGATAAAAAAGACCCAGAGTTTGTATTCTATGATGTTTATGAT
GCAAAAATGAACGTATATAGTGTAAAACCAGccttatttgatttgttttt
ggcTGTTGGCATAGCATCATACCTTGGAGTAGTCTACTTAATGTTCGAGA
ACTTCCATCGGGTGATTGACTTGTTCCCAAAACCAGTCGCCAACGGGAAA
GCTCATTGATTTCTTATCGTGTTAAAAAGCAGCTAGTGAAATTCTTTACA
ATGTATCCATAAATATATTATCGAAAGGAATTGCTATAATATACTGTTGC
AATTCTATACTTTCGACAACATACATTTGAGAAAGTGAAATTTCGTGTGG
CAGTACACCAGACTCATAGCGGATTTGACATATTTTTACAACACTGCATA
CAGATTTTTCGAAAGATGGTATTAATGAATTTTAAatggatttttttgaa
aagattgtacTCCGAGGTATATATTACATTTTCACAAAACGAATGATAGT
ACATATATCAGTGAATTGTTTTGACCAGCATTGATGCTATTTGACAGTTT
TTCAGCACCAATCATGGTGCACACTAATCACGAAATCACAAGTTTTGATT
AAAGAGTAAGTCTTTGGAGTTTTTTGGAATtcatttttatctttcagaat
gtTTTATTTCGCATGAATTTACAGTGTTATTTCAAAACCTTGTCTGTCAT
AGGCTACtagttttattttgatgttgaaattataattttcttaaaatttt
taaaattctatttgagtgttttttttatatattttaaatttaactgtaag
gttttttttctaaacGAGAAATATTTCCAGAAAC
Run BLAST on NCBI

protein sequence of TCONS_00027023-protein

>TCONS_00027023-protein ID=TCONS_00027023-protein|Name=TCONS_00027023-protein|organism=Clytia hemisphaerica|type=polypeptide|length=289bp
MLFLLSGGGKFNYQGTKKWIEDNVESSEFSLLAEAEYVLCIDAIGKGTDL
NLHVSKPPKEGTQGFALVQDLQQVMSEQFSNSKLNVIHKKINMAEEMLPW
EHERFSLRRVPAGTISHHSKPTHRGSIFDNEINSKELKKNIKVIGEGLAR
HIFNLTGKGFSNRVEVFSGGLSVDNDHIDSWIEHLSKEPRSQQLITKDHK
LLAAFEETMNRYLTDVRRIASKADKKDPEFVFYDVYDAKMNVYSVKPALF
DLFLAVGIASYLGVVYLMFENFHRVIDLFPKPVANGKAH
Run BLAST on NCBI

transcript from alignment at sc0000600:200595..208290-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027023 ID=TCONS_00027023|Name=TCONS_00027023|organism=Clytia hemisphaerica|type=transcript|length=7696bp|location=Sequence derived from alignment at sc0000600:200595..208290- (Clytia hemisphaerica)
TATCTTTCCAACGATACCAAATTTATAAAGATTGAAGAATTCCTTCAAAA
GTTATAGGTAAAAGAAAAAAGAGTGCACACTTATCGTGAACAGACTTTAT
TTATAAATCAACCTTTTCGCATCTTCAGAAACTATCCAAAGGCCTTGATT
CAACTGCAAGTGGTGTCATTGCACTTCTGGAATTGGCGCGATTGTTTAGC
AAGTAAGCCTTATCTCTATTCTCTACAGATTCTGATAGACTCTCTAATTC
ATTCCCCTGTATACTGTATGTGAATATTTCACTGAAATAAACTTTTTGAA
AAGGCTTCTTTTCCATTGTTGGAGAATTTCATATTTATATTTAATTTGTA
AATTCAATTTCTGCCGTTTCACCTATTATTATAACATGTAACAGGTTGTA
ATTCTTGCAAGCATGATTTTATAAAATGTTGTAACTTGAACATAATTATG
ATTTAAATAAATCTCTTTTCTTCCTGCAGTTTGTACGAGAAAAGATCAGT
TCAGCCAAAATACAACATGCTGTTTTTACTGTCGGGCGGTGGCAAATTCA
ACTACCAAGGAACCAAGAAATGGATCGAAGACAATGTCGAATCGTCAGGT
AAGAAATTAGTTCGTTTGATCGTATAAACCCAGACACTACTATGACTGCT
TTATTTATTACTTTATTAGTATGTGGATAGTTCGGCCTGTAGAGCTTACG
CCTTGTGGTGTGTATATAAAGGTTACGAATTTCTGATGACAGCCTAGTCA
GCTAACTAGCAACTTCGTTTGGGCTCTTCTGTAAGAAAGCTTTAAGAGAG
ACATAGAAGTAGATCTTACACTCCACTTCAGCAATCGATCTCCCAGGTTA
TTGTTTTTCTTTTGTACATCGTACATATCGTGCATAACGTGCAACCTTGC
AGTATTAGATAAAAGGGTTATATCTTCTTATCATAATAATAATTATGTTT
TCTATTACTTTCTTACTTTAATGATAAAATATTAAAAGATATCTTTCATC
ACAAAATAAAAAAGTACACTACTCCGAGTTTCGTGCTACTGCACTTTTCA
AATGTACAAAATAAATATTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNCCGTTTTGGGGGCCATTAAAAAA
AAGCTTCCTATCTTTAAGCGATTGAAAAAAATTGTTGAAACTGGAAATTT
TGAAAAAGAACTTCTGGGAAATAAAGTACAGATGCTAAAGTTTTTCATGT
TGCAAAAAGTTTTTTAAAACGTCTTTTCCTCTAGATTTGAGAGAAACTTT
AAATTTGATCGACGTTTTGGGGGCCACATACTGACTTTAATATTTTTATG
ATATAAATAGAAAGGACGCGCGCCTCTATGCTAACAAGGCATAGACTTTT
GTGCTCGGGCGGCACTGAAGGGAGAAAATACGTTATTTCTTTTGTTTAAA
AACACTGTGTAAGCAAGTGGTAGAAGATATGTTAAAAGATGTACTTTAAC
ATGGCATTGGAACGGTTTTCATCCCTACTTTTAGAATTCAGTTTGTTAGC
AGAAGCAGAGTACGTCCTTTGTATTGATGCCATTGGTAAGGGAACAGACC
TTAATCTTCACGTCTCCAAACCACCCAAAGAAGGAACACAAGGTTTCGCA
TTAGTACAAGACTTGCAACAGGTAAGTTCTGATTGATCGTAAATATCAAC
CATTATTGCCTTTACTAATCGAATTGACTTGTATACGGGTGCTTTCAAAT
GGGCAGCTCGTTTCTTAAGCTCCTACCATTGATATTGATTTTGTTCTAGT
CCACAATCTGTTAGTTAGTCTTCCGCTAACATATTGAGTAAGATTTAATA
TCCCGATCGAACTCTAGCATAAATACCCTAAAACATCTCTGCTCCATTGT
TATCTTTTTTACAATTTGACTTTAGTGCCCAGGTTTCCCCCTCATTTAAT
TTTCAAGTCACTTTAGAACACCTAAAACTGTCCATTGCTTTAACAATTGA
TCGCTTGCGGCCATTCTAATTCGCGTCGGTATTCCATTTCCGATGCAAAT
GCCAACGCAAATTTGGCTTTTGCCGACGTAAAAGTGCTTACTGTACTATA
GAACCCAGAATTTTTTGCCAACGTAAATAAATCTGAAATAGAAAAACTGA
TTTGTTACAATTTACAACAAACAAGTCCCTTTATCCTTCAGGTGATGTCT
GAACAGTTCTCCAACAGCAAATTGAATGTCATTCACAAGAAAATCAACAT
GGCGGAAGAGATGTTACCATGGGAACACGAGAGATTCTCATTGCGTCGCG
TGCCAGCTGGAACCATCTCCCATCACTCAAAGCCAACACACAGAGGCTCC
ATCTTTGATAATGAGTAAGGCTTGCGTAGAAAATTATATAGTTTTTAAAA
TAATTAAGTAAAGTTTAAGGCAATTAAAACTATGAAGTCGTAGCAATCAT
CAAATGTCGATACATATTAATCGGCATTTCTTTTTTAATTAAGGATAAAA
GTGATACATACCGCAAAATTTGTGTATACTTTAAGGGAACTATTTTCACT
TTTCACGAAAATTTGAACCCACGAAAATATTTACGAACTCGAAACCGAGA
AAATTATTTCCCGCGAAAATGAATTACTGATTTTTTTCGACCGCGAAAGT
CAGATTCTCTCAAGATACATCTATAATATCCCTTAGGAGTTTGAGAACAA
TAGAAAATTCAATACTCCTTATGTGGGATAGAAAAGGCTGGAGGAAAATT
TGATATTTCTTCAAATGTTCAAATTTTTTTACAGAATCAATTCAAAAGAA
TTAAAGAAGAACATTAAAGTGATAGGAGAAGGTTTAGCAAGACATATTTT
CAACTTAACTGGAAAGGTATAGATTCATTAGAAATTTTTCAATTCAAACG
ATAGACTCTTCTAGAAAACGAAACTATCATTAGAATGTTTTTTTTTCAAT
GAGTTATTCCCTCCCCCGGAGGACATTAATGATTCTGAATTTCCCCGTAA
GGTTTAACCATTTTTTGCTTCATACATTTATCATGTTCTTCTCCTTTCCT
TATCATTATTTTTTATCTTTCAGGGATTTTCAAATCGTGTAGAAGTTTTC
TCAGGTGGTCTGGTATGTGATTTTGTTTTCTAATCGGATTGATTCTCGTG
TGAGATTAGAATTTGAGACCAAAATAATCGCCAATGAACCTGAAATCAAA
TGAAAATTGAAATGCTAGTTTCGACCAGAAATAGAAAGTTTAAATTGGTT
TTTGAAGCGTAAACGTGAAATTTTTATTCTCCCTGGTTAAACAGCACTTG
CTTGTCTAAGAGTTTTGGACGCCTCTGAATTTTTTAAATTTAGTCATCTC
TGTTTTTACTTTTTAAAAAGCAAACTAAGGACCAGGGCAAACCAGTCCAA
CATTTCATCCAACATGATTTTCCAATGTTGGATGAAATGTTTGATGGAAA
AACTTGCGTTGGATGAAGCGAAAATCAACGCCGGGGCAAACCGATCCAAC
ATATCATCCGACATGACTTGGAAAGAAAGTTCAAAAAATAAAGAAAAAAA
TACCACCAAACCAATCCAACACGAAAAATTACACAATTCAATGAGAGAGC
TTCTTTGATCTCGCCGCAAATGTTGGATGAAATGTTTGATTGCGATCAAA
CTTCATCCAACACCGTCCAACACGATTTTTTTCTTCTTTTTTTGATTTTT
CATTTTTTACCAAAATTTTGAATTGACGCACACCGGTCCAATATTTCATC
CAACATCAGAAAAAGGCATGTTGGATGAAATGTTGGATCAGTTTGCCCTG
GCCTTTAACAGCGAACATCAGTCGGTTTATTAATTAAAAAAAAAAGTCAA
ATCAAGAAACTTACATAAAAAAGTTTTATTATTTTATTTTATTTTAATTA
AGTTCCTGATGAAACTAGGGGAAATTGGCTGATGTTGCTAAGCATTTCGT
ATAGTTTTGCAGCATTAAATAACAGATTTGGTATGAAAGATATTTAACAT
TCTTGTTTAGAGCGTAGACAATGATCATATTGATTCATGGATCGAACATT
TATCCAAAGAACCGAGAAGTCAACAACTTATTACTAAAGATCATAAACTA
CTCGCTGCTTTCGAAGAGGTAACAGCGAGTTTATGTATTCGAGATAAATC
GAAGGAGACGGTATAAAGCAAAGTTAACATGTCGCCAAAATCGCCGTCCA
CTTTGCTCGACGACGGTAAAAACACCAAAGTACCTACGTCTGTTTAAGTG
AGCAAAAGCGATATAGAGTGTTGCATCAACTATCGACTTTGTTTTGCGTC
GAATTCGCTTACCGTCGCCTTCGATATCCTCCGTTACATAAACTGGCTAA
TAGCCATACAAATTCCCTTTTTATTTGGCCTGTTTTTCCTTCTTGTGAGA
GCTAGAGCAACTGAAATTGTAGCATCCAAATATTAGGTATAACCCTTGCC
TGTACCAGGCGACCAAGGCTTTTTCCTCCTCACCGAGTGATAAAAAATCG
CGCGTTGGGATAGTAATAAGCTAGTATAACACATTTTAATATGTTGAGAA
AAAGTTGATCGCATCGATCCTCATCTGGAGATAATTTGAATCGTAAAAAC
CTTTTTCGTTGTAACCGCACTTGTTAATGTTAATCACATCTTTACTTTTA
CTTTTAATTTTAGACAATGAATCGATATTTAACCGATGTTCGTCGAATTG
CAAGTAAAGCCGATAAAAAGTAAGCCTTCTCCTCAAAAAGATATTGCTGA
AGGATCTACGTCACACTAATACCATATAAAAAATATGATTTAGTATCAGC
AGGTGTTAGATTTTCTGCAAAAACTCTGAAATTTAACGTATCACTTCTGC
TTCCCTGGCAAAGGTTGATAATCTATCTCTAGCCCACGGCTATAATCTCA
TTGCTCGACCCCCGGACAATATTTCATCTTCTGACTACTGAAGTGTTTTT
TGCTTTGAAACCAAACTATGTTAACACGTTTAAGCGGCAGGTTTTAAGTT
GTTCCATGGATTGAAAGTAGTTTCTACCCATGATTATCACTAGAAATAGT
CTCTTCAGTCATTTCAATGTATGATAGTATTTAAGCACTCTCTGTTGAAT
GTTAAGTCTGTTGTAGCCTAGTTTACTAAGCCCGTATTCACTAGGCTAGG
ACACGCCTAATGGCAATATAGCGTTTTCGGCGCTTTAAAGATTTTTTTAT
ATTTACGGATTTTGAAGTTTGCCTTAGAATACTAGTTCTTCAGTCACAAC
TTAACATCAGATTTATCCTAGTGACTGAATCAAACTGGCTTAGATTTTTA
GGCTAAGTCTGTTGTAAAATATTTGACATTCAAATATCTATTAACCGAAT
CAATGACAAATCATTTGATGGTAATTGTTCTTCATTTCGGTTTTCAGAGA
CCCAGAGTTTGTATTCTATGATGTTTATGATGCAAAAATGAACGTATATA
GTGTAAAACCAGCCTTATTTGATTTGTTTTTGGCTGTTGGCATAGCATCA
TACCTTGGAGTAGTCTACTTAATGTTCGAGGTGAGTACCTATATTGAGTG
TCTCAACGTGGCAAAAACAAGGCTTTTGTTCTGGCTATTTCTTTTCCATA
CTATTCGCACCTATTGATTTTTAAAACAAAATTATTCTCTTTGTTATACA
TTGAAAAATGAAAATCTCATATACATTAATAATCATACCAAAACCATATT
TTAAATATATTGCACATACTTATCCCTTGATAGTTTTGCTTACGAAATTT
TTTCAAGAACATGTTGTTCTGACATGTTTTTTGTCTAAAAAGTCAGAACA
TGGTCACGGTTCAATATCGTAACGAAATGAATCTACAGTTGACTCTCTCT
AATTCGATCTTCAAGGGACCAAAGATTCTTTTCGAATTAGAGAAAAATTC
GAATTACAGAGAGTAATTGAAACAAATTTCCAGCTGAGGGAACCAATATT
TTAGTTCGAATTACAAAGAAATTCGATTAATAGAGATTCGAATTAGAGAG
AGTTGACTGTATTTCTATAACTCTGTAACTTTTCTCGCACTATCCAATAA
TGCCACTTGTAGCCAATTATGTAATTTTAAAAATGACGTAATTTTTTTTC
TCTTTTAACAGAACTTCCATCGGGTGATTGACTTGTTCCCAAAACCAGTC
GCCAACGGGAAAGCTCATTGATTTCTTATCGTGTTAAAAAGCAGCTAGTG
AAATTCTTTACAATGTATCCATAAATATATTATCGAAAGGAATTGCTATA
ATATACTGTTGCAATTCTATACTTTCGACAACATACATTTGAGAAAGTGA
AATTTCGTGTGGCAGTACACCAGACTCATAGCGGATTTGACATATTTTTA
CAACACTGCATACAGATTTTTCGAAAGATGGTATTAATGAATTTTAAATG
GATTTTTTTGAAAAGATTGTACTCCGAGGTATATATTACATTTTCACAAA
ACGAATGATAGTACATATATCAGTGAATTGTTTTGACCAGCATTGATGCT
ATTTGACAGTTTTTCAGCACCAATCATGGTGCACACTAATCACGAAATCA
CAAGTTTTGATTAAAGAGTAAGTCTTTGGAGTTTTTTGGAATTCATTTTT
ATCTTTCAGAATGTTTTATTTCGCATGAATTTACAGTGTTATTTCAAAAC
CTTGTCTGTCATAGGCTACTAGTTTTATTTTGATGTTGAAATTATAATTT
TCTTAAAATTTTTAAAATTCTATTTGAGTGTTTTTTTTATATATTTTAAA
TTTAACTGTAAGGTTTTTTTTCTAAACGAGAAATATTTCCAGAAAC

Coding sequence (CDS) from alignment at sc0000600:200595..208290-

>TCONS_00027023 ID=TCONS_00027023|Name=TCONS_00027023|organism=Clytia hemisphaerica|type=CDS|length=7830bp|location=Sequence derived from alignment at sc0000600:200595..208290- (Clytia hemisphaerica)
AACTTCCATCGGGTGATTGACTTGTTCCCAAAACCAGTCGCCAACGGGAA
AGCTCATTGAAGACCCAGAGTTTGTATTCTATGATGTTTATGATGCAAAA
ATGAACGTATATAGTGTAAAACCAGCCTTATTTGATTTGTTTTTGGCTGT
TGGCATAGCATCATACCTTGGAGTAGTCTACTTAATGTTCGAGACAATGA
ATCGATATTTAACCGATGTTCGTCGAATTGCAAGTAAAGCCGATAAAAAA
GCGTAGACAATGATCATATTGATTCATGGATCGAACATTTATCCAAAGAA
CCGAGAAGTCAACAACTTATTACTAAAGATCATAAACTACTCGCTGCTTT
CGAAGAGGGATTTTCAAATCGTGTAGAAGTTTTCTCAGGTGGTCTGAATC
AATTCAAAAGAATTAAAGAAGAACATTAAAGTGATAGGAGAAGGTTTAGC
AAGACATATTTTCAACTTAACTGGAAAGGTGATGTCTGAACAGTTCTCCA
ACAGCAAATTGAATGTCATTCACAAGAAAATCAACATGGCGGAAGAGATG
TTACCATGGGAACACGAGAGATTCTCATTGCGTCGCGTGCCAGCTGGAAC
CATCTCCCATCACTCAAAGCCAACACACAGAGGCTCCATCTTTGATAATG
AAATTCAGTTTGTTAGCAGAAGCAGAGTACGTCCTTTGTATTGATGCCAT
TGGTAAGGGAACAGACCTTAATCTTCACGTCTCCAAACCACCCAAAGAAG
GAACACAAGGTTTCGCATTAGTACAAGACTTGCAACAGATGCTGTTTTTA
CTGTCGGGCGGTGGCAAATTCAACTACCAAGGAACCAAGAAATGGATCGA
AGACAATGTCGAATCGTCAGAACTTCCATCGGGTGATTGACTTGTTCCCA
AAACCAGTCGCCAACGGGAAAGCTCATTGAAGACCCAGAGTTTGTATTCT
ATGATGTTTATGATGCAAAAATGAACGTATATAGTGTAAAACCAGCCTTA
TTTGATTTGTTTTTGGCTGTTGGCATAGCATCATACCTTGGAGTAGTCTA
CTTAATGTTCGAGACAATGAATCGATATTTAACCGATGTTCGTCGAATTG
CAAGTAAAGCCGATAAAAAAGCGTAGACAATGATCATATTGATTCATGGA
TCGAACATTTATCCAAAGAACCGAGAAGTCAACAACTTATTACTAAAGAT
CATAAACTACTCGCTGCTTTCGAAGAGGGATTTTCAAATCGTGTAGAAGT
TTTCTCAGGTGGTCTGAATCAATTCAAAAGAATTAAAGAAGAACATTAAA
GTGATAGGAGAAGGTTTAGCAAGACATATTTTCAACTTAACTGGAAAGGT
GATGTCTGAACAGTTCTCCAACAGCAAATTGAATGTCATTCACAAGAAAA
TCAACATGGCGGAAGAGATGTTACCATGGGAACACGAGAGATTCTCATTG
CGTCGCGTGCCAGCTGGAACCATCTCCCATCACTCAAAGCCAACACACAG
AGGCTCCATCTTTGATAATGAAATTCAGTTTGTTAGCAGAAGCAGAGTAC
GTCCTTTGTATTGATGCCATTGGTAAGGGAACAGACCTTAATCTTCACGT
CTCCAAACCACCCAAAGAAGGAACACAAGGTTTCGCATTAGTACAAGACT
TGCAACAGATGCTGTTTTTACTGTCGGGCGGTGGCAAATTCAACTACCAA
GGAACCAAGAAATGGATCGAAGACAATGTCGAATCGTCAGAACTTCCATC
GGGTGATTGACTTGTTCCCAAAACCAGTCGCCAACGGGAAAGCTCATTGA
AGACCCAGAGTTTGTATTCTATGATGTTTATGATGCAAAAATGAACGTAT
ATAGTGTAAAACCAGCCTTATTTGATTTGTTTTTGGCTGTTGGCATAGCA
TCATACCTTGGAGTAGTCTACTTAATGTTCGAGACAATGAATCGATATTT
AACCGATGTTCGTCGAATTGCAAGTAAAGCCGATAAAAAAGCGTAGACAA
TGATCATATTGATTCATGGATCGAACATTTATCCAAAGAACCGAGAAGTC
AACAACTTATTACTAAAGATCATAAACTACTCGCTGCTTTCGAAGAGGGA
TTTTCAAATCGTGTAGAAGTTTTCTCAGGTGGTCTGAATCAATTCAAAAG
AATTAAAGAAGAACATTAAAGTGATAGGAGAAGGTTTAGCAAGACATATT
TTCAACTTAACTGGAAAGGTGATGTCTGAACAGTTCTCCAACAGCAAATT
GAATGTCATTCACAAGAAAATCAACATGGCGGAAGAGATGTTACCATGGG
AACACGAGAGATTCTCATTGCGTCGCGTGCCAGCTGGAACCATCTCCCAT
CACTCAAAGCCAACACACAGAGGCTCCATCTTTGATAATGAAATTCAGTT
TGTTAGCAGAAGCAGAGTACGTCCTTTGTATTGATGCCATTGGTAAGGGA
ACAGACCTTAATCTTCACGTCTCCAAACCACCCAAAGAAGGAACACAAGG
TTTCGCATTAGTACAAGACTTGCAACAGATGCTGTTTTTACTGTCGGGCG
GTGGCAAATTCAACTACCAAGGAACCAAGAAATGGATCGAAGACAATGTC
GAATCGTCAGAACTTCCATCGGGTGATTGACTTGTTCCCAAAACCAGTCG
CCAACGGGAAAGCTCATTGAAGACCCAGAGTTTGTATTCTATGATGTTTA
TGATGCAAAAATGAACGTATATAGTGTAAAACCAGCCTTATTTGATTTGT
TTTTGGCTGTTGGCATAGCATCATACCTTGGAGTAGTCTACTTAATGTTC
GAGACAATGAATCGATATTTAACCGATGTTCGTCGAATTGCAAGTAAAGC
CGATAAAAAAGCGTAGACAATGATCATATTGATTCATGGATCGAACATTT
ATCCAAAGAACCGAGAAGTCAACAACTTATTACTAAAGATCATAAACTAC
TCGCTGCTTTCGAAGAGGGATTTTCAAATCGTGTAGAAGTTTTCTCAGGT
GGTCTGAATCAATTCAAAAGAATTAAAGAAGAACATTAAAGTGATAGGAG
AAGGTTTAGCAAGACATATTTTCAACTTAACTGGAAAGGTGATGTCTGAA
CAGTTCTCCAACAGCAAATTGAATGTCATTCACAAGAAAATCAACATGGC
GGAAGAGATGTTACCATGGGAACACGAGAGATTCTCATTGCGTCGCGTGC
CAGCTGGAACCATCTCCCATCACTCAAAGCCAACACACAGAGGCTCCATC
TTTGATAATGAAATTCAGTTTGTTAGCAGAAGCAGAGTACGTCCTTTGTA
TTGATGCCATTGGTAAGGGAACAGACCTTAATCTTCACGTCTCCAAACCA
CCCAAAGAAGGAACACAAGGTTTCGCATTAGTACAAGACTTGCAACAGAT
GCTGTTTTTACTGTCGGGCGGTGGCAAATTCAACTACCAAGGAACCAAGA
AATGGATCGAAGACAATGTCGAATCGTCAGAACTTCCATCGGGTGATTGA
CTTGTTCCCAAAACCAGTCGCCAACGGGAAAGCTCATTGAAGACCCAGAG
TTTGTATTCTATGATGTTTATGATGCAAAAATGAACGTATATAGTGTAAA
ACCAGCCTTATTTGATTTGTTTTTGGCTGTTGGCATAGCATCATACCTTG
GAGTAGTCTACTTAATGTTCGAGACAATGAATCGATATTTAACCGATGTT
CGTCGAATTGCAAGTAAAGCCGATAAAAAAGCGTAGACAATGATCATATT
GATTCATGGATCGAACATTTATCCAAAGAACCGAGAAGTCAACAACTTAT
TACTAAAGATCATAAACTACTCGCTGCTTTCGAAGAGGGATTTTCAAATC
GTGTAGAAGTTTTCTCAGGTGGTCTGAATCAATTCAAAAGAATTAAAGAA
GAACATTAAAGTGATAGGAGAAGGTTTAGCAAGACATATTTTCAACTTAA
CTGGAAAGGTGATGTCTGAACAGTTCTCCAACAGCAAATTGAATGTCATT
CACAAGAAAATCAACATGGCGGAAGAGATGTTACCATGGGAACACGAGAG
ATTCTCATTGCGTCGCGTGCCAGCTGGAACCATCTCCCATCACTCAAAGC
CAACACACAGAGGCTCCATCTTTGATAATGAAATTCAGTTTGTTAGCAGA
AGCAGAGTACGTCCTTTGTATTGATGCCATTGGTAAGGGAACAGACCTTA
ATCTTCACGTCTCCAAACCACCCAAAGAAGGAACACAAGGTTTCGCATTA
GTACAAGACTTGCAACAGATGCTGTTTTTACTGTCGGGCGGTGGCAAATT
CAACTACCAAGGAACCAAGAAATGGATCGAAGACAATGTCGAATCGTCAG
AACTTCCATCGGGTGATTGACTTGTTCCCAAAACCAGTCGCCAACGGGAA
AGCTCATTGAAGACCCAGAGTTTGTATTCTATGATGTTTATGATGCAAAA
ATGAACGTATATAGTGTAAAACCAGCCTTATTTGATTTGTTTTTGGCTGT
TGGCATAGCATCATACCTTGGAGTAGTCTACTTAATGTTCGAGACAATGA
ATCGATATTTAACCGATGTTCGTCGAATTGCAAGTAAAGCCGATAAAAAA
GCGTAGACAATGATCATATTGATTCATGGATCGAACATTTATCCAAAGAA
CCGAGAAGTCAACAACTTATTACTAAAGATCATAAACTACTCGCTGCTTT
CGAAGAGGGATTTTCAAATCGTGTAGAAGTTTTCTCAGGTGGTCTGAATC
AATTCAAAAGAATTAAAGAAGAACATTAAAGTGATAGGAGAAGGTTTAGC
AAGACATATTTTCAACTTAACTGGAAAGGTGATGTCTGAACAGTTCTCCA
ACAGCAAATTGAATGTCATTCACAAGAAAATCAACATGGCGGAAGAGATG
TTACCATGGGAACACGAGAGATTCTCATTGCGTCGCGTGCCAGCTGGAAC
CATCTCCCATCACTCAAAGCCAACACACAGAGGCTCCATCTTTGATAATG
AAATTCAGTTTGTTAGCAGAAGCAGAGTACGTCCTTTGTATTGATGCCAT
TGGTAAGGGAACAGACCTTAATCTTCACGTCTCCAAACCACCCAAAGAAG
GAACACAAGGTTTCGCATTAGTACAAGACTTGCAACAGATGCTGTTTTTA
CTGTCGGGCGGTGGCAAATTCAACTACCAAGGAACCAAGAAATGGATCGA
AGACAATGTCGAATCGTCAGAACTTCCATCGGGTGATTGACTTGTTCCCA
AAACCAGTCGCCAACGGGAAAGCTCATTGAAGACCCAGAGTTTGTATTCT
ATGATGTTTATGATGCAAAAATGAACGTATATAGTGTAAAACCAGCCTTA
TTTGATTTGTTTTTGGCTGTTGGCATAGCATCATACCTTGGAGTAGTCTA
CTTAATGTTCGAGACAATGAATCGATATTTAACCGATGTTCGTCGAATTG
CAAGTAAAGCCGATAAAAAAGCGTAGACAATGATCATATTGATTCATGGA
TCGAACATTTATCCAAAGAACCGAGAAGTCAACAACTTATTACTAAAGAT
CATAAACTACTCGCTGCTTTCGAAGAGGGATTTTCAAATCGTGTAGAAGT
TTTCTCAGGTGGTCTGAATCAATTCAAAAGAATTAAAGAAGAACATTAAA
GTGATAGGAGAAGGTTTAGCAAGACATATTTTCAACTTAACTGGAAAGGT
GATGTCTGAACAGTTCTCCAACAGCAAATTGAATGTCATTCACAAGAAAA
TCAACATGGCGGAAGAGATGTTACCATGGGAACACGAGAGATTCTCATTG
CGTCGCGTGCCAGCTGGAACCATCTCCCATCACTCAAAGCCAACACACAG
AGGCTCCATCTTTGATAATGAAATTCAGTTTGTTAGCAGAAGCAGAGTAC
GTCCTTTGTATTGATGCCATTGGTAAGGGAACAGACCTTAATCTTCACGT
CTCCAAACCACCCAAAGAAGGAACACAAGGTTTCGCATTAGTACAAGACT
TGCAACAGATGCTGTTTTTACTGTCGGGCGGTGGCAAATTCAACTACCAA
GGAACCAAGAAATGGATCGAAGACAATGTCGAATCGTCAGAACTTCCATC
GGGTGATTGACTTGTTCCCAAAACCAGTCGCCAACGGGAAAGCTCATTGA
AGACCCAGAGTTTGTATTCTATGATGTTTATGATGCAAAAATGAACGTAT
ATAGTGTAAAACCAGCCTTATTTGATTTGTTTTTGGCTGTTGGCATAGCA
TCATACCTTGGAGTAGTCTACTTAATGTTCGAGACAATGAATCGATATTT
AACCGATGTTCGTCGAATTGCAAGTAAAGCCGATAAAAAAGCGTAGACAA
TGATCATATTGATTCATGGATCGAACATTTATCCAAAGAACCGAGAAGTC
AACAACTTATTACTAAAGATCATAAACTACTCGCTGCTTTCGAAGAGGGA
TTTTCAAATCGTGTAGAAGTTTTCTCAGGTGGTCTGAATCAATTCAAAAG
AATTAAAGAAGAACATTAAAGTGATAGGAGAAGGTTTAGCAAGACATATT
TTCAACTTAACTGGAAAGGTGATGTCTGAACAGTTCTCCAACAGCAAATT
GAATGTCATTCACAAGAAAATCAACATGGCGGAAGAGATGTTACCATGGG
AACACGAGAGATTCTCATTGCGTCGCGTGCCAGCTGGAACCATCTCCCAT
CACTCAAAGCCAACACACAGAGGCTCCATCTTTGATAATGAAATTCAGTT
TGTTAGCAGAAGCAGAGTACGTCCTTTGTATTGATGCCATTGGTAAGGGA
ACAGACCTTAATCTTCACGTCTCCAAACCACCCAAAGAAGGAACACAAGG
TTTCGCATTAGTACAAGACTTGCAACAGATGCTGTTTTTACTGTCGGGCG
GTGGCAAATTCAACTACCAAGGAACCAAGAAATGGATCGAAGACAATGTC
GAATCGTCAGAACTTCCATCGGGTGATTGACTTGTTCCCAAAACCAGTCG
CCAACGGGAAAGCTCATTGAAGACCCAGAGTTTGTATTCTATGATGTTTA
TGATGCAAAAATGAACGTATATAGTGTAAAACCAGCCTTATTTGATTTGT
TTTTGGCTGTTGGCATAGCATCATACCTTGGAGTAGTCTACTTAATGTTC
GAGACAATGAATCGATATTTAACCGATGTTCGTCGAATTGCAAGTAAAGC
CGATAAAAAAGCGTAGACAATGATCATATTGATTCATGGATCGAACATTT
ATCCAAAGAACCGAGAAGTCAACAACTTATTACTAAAGATCATAAACTAC
TCGCTGCTTTCGAAGAGGGATTTTCAAATCGTGTAGAAGTTTTCTCAGGT
GGTCTGAATCAATTCAAAAGAATTAAAGAAGAACATTAAAGTGATAGGAG
AAGGTTTAGCAAGACATATTTTCAACTTAACTGGAAAGGTGATGTCTGAA
CAGTTCTCCAACAGCAAATTGAATGTCATTCACAAGAAAATCAACATGGC
GGAAGAGATGTTACCATGGGAACACGAGAGATTCTCATTGCGTCGCGTGC
CAGCTGGAACCATCTCCCATCACTCAAAGCCAACACACAGAGGCTCCATC
TTTGATAATGAAATTCAGTTTGTTAGCAGAAGCAGAGTACGTCCTTTGTA
TTGATGCCATTGGTAAGGGAACAGACCTTAATCTTCACGTCTCCAAACCA
CCCAAAGAAGGAACACAAGGTTTCGCATTAGTACAAGACTTGCAACAGAT
GCTGTTTTTACTGTCGGGCGGTGGCAAATTCAACTACCAAGGAACCAAGA
AATGGATCGAAGACAATGTCGAATCGTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015178XLOC_015178Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027023-exon-sc0000600-1575043694:208089..208290TCONS_00027023-exon-sc0000600-1575043694:208089..208290Clytia hemisphaericaexon
TCONS_00027023-exon-sc0000600-1575043694:207693..207811TCONS_00027023-exon-sc0000600-1575043694:207693..207811Clytia hemisphaericaexon
TCONS_00027023-exon-sc0000600-1575043694:205720..205856TCONS_00027023-exon-sc0000600-1575043694:205720..205856Clytia hemisphaericaexon
TCONS_00027023-exon-sc0000600-1575043694:205027..205199TCONS_00027023-exon-sc0000600-1575043694:205027..205199Clytia hemisphaericaexon
TCONS_00027023-exon-sc0000600-1575043694:204525..204606TCONS_00027023-exon-sc0000600-1575043694:204525..204606Clytia hemisphaericaexon
TCONS_00027023-exon-sc0000600-1575043694:204279..204317TCONS_00027023-exon-sc0000600-1575043694:204279..204317Clytia hemisphaericaexon
TCONS_00027023-exon-sc0000600-1575043694:203273..203380TCONS_00027023-exon-sc0000600-1575043694:203273..203380Clytia hemisphaericaexon
TCONS_00027023-exon-sc0000600-1575043694:202672..202727TCONS_00027023-exon-sc0000600-1575043694:202672..202727Clytia hemisphaericaexon
TCONS_00027023-exon-sc0000600-1575043694:201861..201993TCONS_00027023-exon-sc0000600-1575043694:201861..201993Clytia hemisphaericaexon
TCONS_00027023-exon-sc0000600-1575043694:200595..201279TCONS_00027023-exon-sc0000600-1575043694:200595..201279Clytia hemisphaericaexon
TCONS_00027023-exon-sc0000600-1510915933:208089..208290TCONS_00027023-exon-sc0000600-1510915933:208089..208290Clytia hemisphaericaexon
TCONS_00027023-exon-sc0000600-1510915933:207693..207811TCONS_00027023-exon-sc0000600-1510915933:207693..207811Clytia hemisphaericaexon
TCONS_00027023-exon-sc0000600-1510915933:205720..205856TCONS_00027023-exon-sc0000600-1510915933:205720..205856Clytia hemisphaericaexon
TCONS_00027023-exon-sc0000600-1510915933:205027..205199TCONS_00027023-exon-sc0000600-1510915933:205027..205199Clytia hemisphaericaexon
TCONS_00027023-exon-sc0000600-1510915933:204525..204606TCONS_00027023-exon-sc0000600-1510915933:204525..204606Clytia hemisphaericaexon
TCONS_00027023-exon-sc0000600-1510915933:204279..204317TCONS_00027023-exon-sc0000600-1510915933:204279..204317Clytia hemisphaericaexon
TCONS_00027023-exon-sc0000600-1510915933:203273..203380TCONS_00027023-exon-sc0000600-1510915933:203273..203380Clytia hemisphaericaexon
TCONS_00027023-exon-sc0000600-1510915933:202672..202727TCONS_00027023-exon-sc0000600-1510915933:202672..202727Clytia hemisphaericaexon
TCONS_00027023-exon-sc0000600-1510915933:201861..201993TCONS_00027023-exon-sc0000600-1510915933:201861..201993Clytia hemisphaericaexon
TCONS_00027023-exon-sc0000600-1510915933:200595..201279TCONS_00027023-exon-sc0000600-1510915933:200595..201279Clytia hemisphaericaexon
TCONS_00027023-exon-sc0000600-1491911889:208089..208290TCONS_00027023-exon-sc0000600-1491911889:208089..208290Clytia hemisphaericaexon
TCONS_00027023-exon-sc0000600-1491911889:207693..207811TCONS_00027023-exon-sc0000600-1491911889:207693..207811Clytia hemisphaericaexon
TCONS_00027023-exon-sc0000600-1491911889:205720..205856TCONS_00027023-exon-sc0000600-1491911889:205720..205856Clytia hemisphaericaexon
TCONS_00027023-exon-sc0000600-1491911889:205027..205199TCONS_00027023-exon-sc0000600-1491911889:205027..205199Clytia hemisphaericaexon
TCONS_00027023-exon-sc0000600-1491911889:204525..204606TCONS_00027023-exon-sc0000600-1491911889:204525..204606Clytia hemisphaericaexon
TCONS_00027023-exon-sc0000600-1491911889:204279..204317TCONS_00027023-exon-sc0000600-1491911889:204279..204317Clytia hemisphaericaexon
TCONS_00027023-exon-sc0000600-1491911889:203273..203380TCONS_00027023-exon-sc0000600-1491911889:203273..203380Clytia hemisphaericaexon
TCONS_00027023-exon-sc0000600-1491911889:202672..202727TCONS_00027023-exon-sc0000600-1491911889:202672..202727Clytia hemisphaericaexon
TCONS_00027023-exon-sc0000600-1491911889:201861..201993TCONS_00027023-exon-sc0000600-1491911889:201861..201993Clytia hemisphaericaexon
TCONS_00027023-exon-sc0000600-1491911889:200595..201279TCONS_00027023-exon-sc0000600-1491911889:200595..201279Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027023-proteinTCONS_00027023-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000600supercontigsc0000600:200595..208290 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
29.7519	28.8755	18.3042	14.6567	138.656	103.945	71.8559	73.1172	50.1089	55.1337	59.8951	53.717	75.2488	86.8761	56.7401	66.2779	48.563	44.9033	26.1176	27.3472	40.3792	41.1671	66.3469	62.0869	34.0748	41.7638	29.2071	26.9807	68.1319	59.4634
Blast
[Close]
BLAST of TCONS_00027023 vs. Swiss-Prot (Human)
Match: NCLN (Nicalin OS=Homo sapiens GN=NCLN PE=1 SV=2)

HSP 1 Score: 314.309 bits (804), Expect = 1.276e-98
Identity = 153/313 (48.88%), Postives = 217/313 (69.33%), Query Frame = 3 
Query:  132 LSKGLDSTASGVIALLELARLFSNLYEKRSVQPKYNMLFLLSGGGKFNYQGTKKWIEDNVXXXXXXXXX-XXXYVLCIDAIGKGTDLNLHVSKPPKEGTQGFALVQDLQQVMSEQFSNSKLNVIHKKINMAEEMLPWEHERFSLRRVPAGTISH--HSKPTHRGSIFD--NEINSKELKKNIKVIGEGLARHIFNLTGKGFSNRVEVFSGGLSVDNDHIDSWIEHLSKEPRSQQLITKDHKLLAAFEETMNRYLTDVRRIASKADKKDPEFVFYDVYDAKMNVYSVKPALFDLFLAVGIASYLGVVYLMFENF 1055
            LS G DS  SGV  LLELARLFS LY  +     YN+LF  SGGGKFNYQGTK+W+EDN++ ++ SLL     +VLC+D +G+G+ L+LHVSKPP+EGT   A +++L+ V + QF   + +++HK+IN+AE++L WEHERF++RR+PA T+SH    +   R SI D  + ++SK L +N ++I E L R I+NLT KG    + VF+  + +  + +DS ++ L+ +PR+ QL+ KD   L+  E  ++RYL DV++   KADK+DPEFVFYD     MN Y VKPA+FDL LAVGIA+YLG+ Y+  ++F
Sbjct:  234 LSLGADSNGSGVSVLLELARLFSRLYTYKRTHAAYNLLFFASGGGKFNYQGTKRWLEDNLDHTDSSLLQDNVAFVLCLDTVGRGSSLHLHVSKPPREGTLQHAFLRELETVAAHQFPEVRFSMVHKRINLAEDVLAWEHERFAIRRLPAFTLSHLESHRDGQRSSIMDVRSRVDSKTLTRNTRIIAEALTRVIYNLTEKGTPPDMPVFTEQMQIQQEQLDSVMDWLTNQPRAAQLVDKDSTFLSTLEHHLSRYLKDVKQHHVKADKRDPEFVFYDQLKQVMNAYRVKPAVFDLLLAVGIAAYLGMAYVAVQHF 546
The following BLAST results are available for this feature:
BLAST of TCONS_00027023 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NCLN1.276e-9848.88Nicalin OS=Homo sapiens GN=NCLN PE=1 SV=2[more]
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