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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027029 ID=TCONS_00027029|Name=TCONS_00027029|organism=Clytia hemisphaerica|type=transcript|length=2069bpRun BLAST on NCBI protein sequence of TCONS_00027029-protein >TCONS_00027029-protein ID=TCONS_00027029-protein|Name=TCONS_00027029-protein|organism=Clytia hemisphaerica|type=polypeptide|length=385bp MSDSNTDNFVNSLFSKKLINELNITNINFNPVAQTGMTKTMLKISTAESKRun BLAST on NCBI transcript from alignment at sc0000601:32419..63245+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00027029 ID=TCONS_00027029|Name=TCONS_00027029|organism=Clytia hemisphaerica|type=transcript|length=30827bp|location=Sequence derived from alignment at sc0000601:32419..63245+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000601:32419..63245+ >TCONS_00027029 ID=TCONS_00027029|Name=TCONS_00027029|organism=Clytia hemisphaerica|type=CDS|length=13896bp|location=Sequence derived from alignment at sc0000601:32419..63245+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00027029 vs. Swiss-Prot (Human)
Match: RAD17 (Cell cycle checkpoint protein RAD17 OS=Homo sapiens GN=RAD17 PE=1 SV=2) HSP 1 Score: 221.09 bits (562), Expect = 7.837e-62 Identity = 141/364 (38.74%), Postives = 201/364 (55.22%), Query Frame = 3
Query: 297 RQYKNHGKCPLVFIMSDS-NTDNFVNSLFSKKLINELNITNINFNPVAQTGMTKTMLKISTAESKENAD-LVIPSKDVLSLLATSSNGDIRACINSLQFYCT--DRNSIPK-----LRKKQPVAKGXXXXXXXXXXDAQKIAGCIGEKDASLFLFRALGKVLYCKREDEYEDSEKSLPSHLTRSKRKKLIEIPEEIYENTQISSDNYALYLHQNYPEFFTNIDEVVTVSSNCSQADHIGNSWENKH-LQDYSASICARGMMYANARPSSAGGQSGG--WRPLHKPQWFDVFKTSNRNRKFVLDNFNGCHYSKQTLFTDIIPYIEKL----RSHSTNGLIREISSFPLQRSQQQHTRKNLQALSN 1340
R+Y G+CPL+FI+SDS + DN LF K++ E +I+NI+FNPVA T M K + +I T E+ +N + +P K L LL +GDIR+ INSLQF + + N P+ L+ ++K K+ + Q++ IG KD SLFLFRALGK+LYCKR E LPSHL+ +R L+ PEE+ E + + D + LYLHQNY +FF ID++V S S AD + W + L++YS SI RG+M++N A Q GG +RPLHKPQWF + K N F L T ++PY+ L R+ + I++I PL+R R ++AL++
Sbjct: 244 RKYVRIGRCPLIFIISDSLSGDNNQRLLFPKEIQEECSISNISFNPVAPTIMMKFLNRIVTIEANKNGGKITVPDKTSLELLCQGCSGDIRSAINSLQFSSSKGENNLRPRKKGMSLKSDAVLSKSKRRKKPDRVFENQEVQA-IGGKDVSLFLFRALGKILYCKRASLTELDSPRLPSHLSEYERDTLLVEPEEVVEMSHMPGDLFNLYLHQNYIDFFMEIDDIVRASEFLSFADILSGDWNTRSLLREYSTSIATRGVMHSNKARGYAHCQGGGSSFRPLHKPQWFLINKKYRENCLAAKALFPDFCLPALCLQTQLLPYLALLTIPMRNQAQISFIQDIGRLPLKR---HFGRLKMEALTD 603 The following BLAST results are available for this feature:
BLAST of TCONS_00027029 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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