TCONS_00027041 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027041
Unique NameTCONS_00027041
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1135

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027041 ID=TCONS_00027041|Name=TCONS_00027041|organism=Clytia hemisphaerica|type=transcript|length=1135bp
CNCCCGATCAAGATCGCGTTCAAACTCACCAAAGCGTCGCAGTAGAAGAA
GtCCCAGTCCTTCTCGGCACCGTAGACATCGTAGTAGAAGTCGTTCTCGA
TCTCGCTCACCCAGACACAGTCGAAGACATCGGTCAAGATCTCGATCGCC
CAGAAGAAGTCGACGCTGAGATATAAAACAAATTGAATAACAATATCCTG
GGTAATTCAACGTTGAGCGTCACTAATTTCGAATATTATACTATTTGAAA
CCGTAGAACTTTTTAAATGGATTTTTGAAGAATGCATTTCATAAACTGTT
GTTAAACTTACGTGGGAGGAAAATTTAGCTTGCTTTTGAGATTATAAAGG
AAAGCTGGCGCACACTTGGAAAATAATGAAGACAACGCATTGCATGTTGA
ATTTAAAGCACTTCGAAAATTGTATGTACATAGACATGATGCAAAAGTAA
TCAAAAAGGTTTTCTGCCTAAGGTGCAACGTGTTACGAGATAACAGAAAA
CTGAAAGTAGAAACTTGAAATATTTGCATCTAGAtcaatggaaatttttt
taacgtTTATTAGTTAAAATACAAttcattttgagaaatttgaggATCGT
ACCTTATATAAATtcatttacacttttttttccGTACACACTGTATGTAC
AAGAACTTTCGTCAAACATGTTTAATAAACATGCGACAGCAATTGCCAAT
TAAAACAAAGTGCGGTGTGTGCGTTCGTTATATCTTGCTCCGTCTCAGCA
ATAGCAAGAAAAGTCATGCGCATGCCCAAGATGTTGTGAGCGAGTGATGC
CATATTCTTGTGCTTTGGGTCGAGTCAAACATATTGCTATTTTCGACTTT
CTCGTGTTAAAAAATTACCCCTTAGCGAGATTATTTGTTACTATTCTTAG
AGAGAATATTCGTTTTAAAGAGAATTTGAACAGAAACACGTTGTCGAAAT
AAGTACAGAACcctggggacaaaaattgaagtatgattttccaccaggga
cgaTATTTCGGCCAATTTTTCCGGTGGGAAGGGGTcttagtgggtctgtg
agaagggggtataaAGGGGGTGTTTAAAATCGATAGATTCCTTCATAACT
GTTCAATTATCAGTCATCAAAATTTGTAAGCAGCT
Run BLAST on NCBI

transcript from alignment at sc0000601:133728..135577-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027041 ID=TCONS_00027041|Name=TCONS_00027041|organism=Clytia hemisphaerica|type=transcript|length=1850bp|location=Sequence derived from alignment at sc0000601:133728..135577- (Clytia hemisphaerica)
CNCCCGATCAAGATCGCGTTCAAACTCACCAAAGCGTCGCAGTAGAAGAA
GGTACAGTTAATTCTTTCTACATTAAAGGAAGAAATTTTGGCGGGAATCT
AATTTGGCGGATGACCGAAAAAGTTTTTTTAGAGGGAATTTAATTTGGCA
TTTAACTTGAAAAATTAAATTTGGCGGGGATTCAATTTGGCGGACGAAGG
ACATCTTTGTCCAAAAAACGCCATTAAAAAAAGAAAAACATGTTTTAAAG
CCTGATATAGCACACACATTTGGGGGAATAAATAGAGCAACTTAAATCTG
ATGGGAATTTGATTTGGCCGATGACGGAAAAAATTAGATTTGGCGGGTAC
TTGGATTTTGACCGAATCCGCCAAACTCGCCAAATTTTCTTCCCGCCAAA
ATTTCTTCCTTTAATTAAATGTAATTCAATTTTCAAGGGGAATTGTCGGA
TTTTCTCTATTTTCCCTATGAATCAGCCAGGTTTTTGTATGATGTCATTT
TTTTCTTTTTTAAGATTTACTTATGAAGCGAATTTCCCTCTAATTTCACT
CAAAATACATTCGACTTTCTACTAAGTGTAATTTCGAGAGTATGTTGTGC
TCTTATGCTCTACTGTATCGCGACGATCTGTAGTCGGAATTTATCGGATT
CAAATAATCTGTTATTGTTCTAGAATTTTATTAACAAGCTTAGTTTGTCT
TAATTAAGCCCTTGATGCAAAAATTGCCGTTATATAATATTTAGAAATAT
TTTTTCTTTTTTACAGTCCCAGTCCTTCTCGGCACCGTAGACATCGTAGT
AGAAGTCGTTCTCGATCTCGCTCACCCAGACACAGTCGAAGACATCGGTC
AAGATCTCGATCGCCCAGAAGAAGTCGACGCTGAGATATAAAACAAATTG
AATAACAATATCCTGGGTAATTCAACGTTGAGCGTCACTAATTTCGAATA
TTATACTATTTGAAACCGTAGAACTTTTTAAATGGATTTTTGAAGAATGC
ATTTCATAAACTGTTGTTAAACTTACGTGGGAGGAAAATTTAGCTTGCTT
TTGAGATTATAAAGGAAAGCTGGCGCACACTTGGAAAATAATGAAGACAA
CGCATTGCATGTTGAATTTAAAGCACTTCGAAAATTGTATGTACATAGAC
ATGATGCAAAAGTAATCAAAAAGGTTTTCTGCCTAAGGTGCAACGTGTTA
CGAGATAACAGAAAACTGAAAGTAGAAACTTGAAATATTTGCATCTAGAT
CAATGGAAATTTTTTTAACGTTTATTAGTTAAAATACAATTCATTTTGAG
AAATTTGAGGATCGTACCTTATATAAATTCATTTACACTTTTTTTTCCGT
ACACACTGTATGTACAAGAACTTTCGTCAAACATGTTTAATAAACATGCG
ACAGCAATTGCCAATTAAAACAAAGTGCGGTGTGTGCGTTCGTTATATCT
TGCTCCGTCTCAGCAATAGCAAGAAAAGTCATGCGCATGCCCAAGATGTT
GTGAGCGAGTGATGCCATATTCTTGTGCTTTGGGTCGAGTCAAACATATT
GCTATTTTCGACTTTCTCGTGTTAAAAAATTACCCCTTAGCGAGATTATT
TGTTACTATTCTTAGAGAGAATATTCGTTTTAAAGAGAATTTGAACAGAA
ACACGTTGTCGAAATAAGTACAGAACCCTGGGGACAAAAATTGAAGTATG
ATTTTCCACCAGGGACGATATTTCGGCCAATTTTTCCGGTGGGAAGGGGT
CTTAGTGGGTCTGTGAGAAGGGGGTATAAAGGGGGTGTTTAAAATCGATA
GATTCCTTCATAACTGTTCAATTATCAGTCATCAAAATTTGTAAGCAGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015190XLOC_015190Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027041-exon-sc0000601-1575043694:135527..135577TCONS_00027041-exon-sc0000601-1575043694:135527..135577Clytia hemisphaericaexon
TCONS_00027041-exon-sc0000601-1575043694:133728..134811TCONS_00027041-exon-sc0000601-1575043694:133728..134811Clytia hemisphaericaexon
TCONS_00027041-exon-sc0000601-1510915933:135527..135577TCONS_00027041-exon-sc0000601-1510915933:135527..135577Clytia hemisphaericaexon
TCONS_00027041-exon-sc0000601-1510915933:133728..134811TCONS_00027041-exon-sc0000601-1510915933:133728..134811Clytia hemisphaericaexon
TCONS_00027041-exon-sc0000601-1491911889:135527..135577TCONS_00027041-exon-sc0000601-1491911889:135527..135577Clytia hemisphaericaexon
TCONS_00027041-exon-sc0000601-1491911889:133728..134811TCONS_00027041-exon-sc0000601-1491911889:133728..134811Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000601supercontigsc0000601:133728..135577 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.8016	5.63185	6.32288	4.94932	0.145466	0	0	0.109173	2.02949	1.77314	1.15669	0.972114	1.24386	0.754272	0.714424	0.756739	2.63347	1.99464	0.441614	0.391698	1.18104	1.36387	3.04956	2.55262	0.0985672	0	0.693914	0.612161	1.1111	1.99706
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027041 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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