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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027043 ID=TCONS_00027043|Name=TCONS_00027043|organism=Clytia hemisphaerica|type=transcript|length=626bp
TTCAGTTTCGTTTTCCAATTgataaaagaaattatttctaGTCTATATCA
AATCAAGATGGCGAACAGAACTGTGACTGACGCAAAAACTGTCCGTGGTA
CAAATCCACAATACCTGGTCGAAAAGATCACGAGAACACGTATTTACGAA
TGCAAATATTGGAAGGAACATTGCTTCGCCCTAACagCTGAGTTGATGGT
GGACAAAGCCATGGAACTCAAAGCTGTCGGCGGAACTTTTGGTGGGAATG
TGAAACCAACACCATTCATTTGCTTAGTATTGAAAATGTTACAGATCCAA
CCCGAAAAAGATATCGTGGTAGAATTCATTCGAAACGAGGATTACAaATA
CGTCAGAGCGCTTGGTGCATTCTATATGCGACTTGTGGGCACATCACTCG
ATTGTTATAAATATTTGGAACCTTTATATAATGACTATCGAAAGATGCGG
AAAAAGGATAAAGTTGGAGGTAAGTTAACTTATACTAGACATCGGGGCTT
TTTTCTACGCAGTAACGTCTATTTCACTTAGCGACTAAGTTGTAGCGCAA
GGtttttcgggctccaaacatttgAATTTTTGACGCCAATTTAAATTCTG
CTCCTATGAAAGAATCGAATCAAAAT Run BLAST on NCBI protein sequence of TCONS_00027043-protein >TCONS_00027043-protein ID=TCONS_00027043-protein|Name=TCONS_00027043-protein|organism=Clytia hemisphaerica|type=polypeptide|length=176bp
FSFVFQLIKEIISSLYQIKMANRTVTDAKTVRGTNPQYLVEKITRTRIYE
CKYWKEHCFALTAELMVDKAMELKAVGGTFGGNVKPTPFICLVLKMLQIQ
PEKDIVVEFIRNEDYKYVRALGAFYMRLVGTSLDCYKYLEPLYNDYRKMR
KKDKVGGKLTYTRHRGFFLRSNVYFT Run BLAST on NCBI transcript from alignment at sc0000601:138889..148035- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027043 ID=TCONS_00027043|Name=TCONS_00027043|organism=Clytia hemisphaerica|type=transcript|length=9147bp|location=Sequence derived from alignment at sc0000601:138889..148035- (Clytia hemisphaerica)
TTCAGTTTCGTTTTCCAATTGATAAAAGAAATTATTTCTAGTCTATATCA
AATCAAGATGGCGAACAGAACTGTGACTGACGCAAAAACTGTCCGTGGTA
CAAATCCACAATACCTGGTCGAAAAGATCACGAGAACACGTATTTACGAA
TGCAAATATTGGAAGGAACATTGCTTCGCCCTAACAGGTATATTTTATTT
TTATCTTTTGGCTTGGAAATTTCACTAGATATACTGTAATCTTAGAAAAA
ACAAAAAATACCACGACCCTGCCTGGGCCATTCCAGAAAAAAAAATTACC
CCCTAATGGATGACATCAATTTTTTAAATAAATTTTGGCACGGAATTCCA
GGCAAACTTTAAAGAGAAAGTATCGGAANNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNTTAGTTTGTTCTACCTTGGATTATAACTGAAAATATC
TTCAAAAAAACCTTTGTCCGCTATCAGCCGCGCGGTAATCTTTGCCCGCT
TCAATTCTTAGATAATCAATAAGAGATGTGCGCTTAGCTAAGCCGTGCTC
GGGGGCGATAAATTTATGTTTACTTATCTTGTATATTTTAGTAGTATTTA
TTCAATGAAAAGGATGTTGACAAAACGGCACGACATTGATTATGACATCA
TTAAATATGTCAATGTCGATTCAACGCCCGTTAAAGAAAATAATTCGTAG
ATAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNAAGATCAAATTTAATATTTGTTTCCTATCTAGAT
TATATTAGCGTTAGAATACGGTAAATTTTCACGAAAAATATTTCGCGATG
GCGATACGCCCAATCACGCCCACGGGAAAGTTCCAATTTTTAATTATCGG
GAAATCAGGGAAACCGGTTCACCACGTGGATAAAAAACGTACGGAATGAA
ACCTGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNAAGGAAAGAGTAAACGCAAGACAGAAGGTTTGGTTGTG
TTGATCAGGTATGTTTTTATTCTATCCGAACTAATGTTAAAAAAGTCCAA
AGAGGTCCTGACTGCTTACCGCTTACCGCCCGTTTCAGAACAATTTCGAT
AAGCGTGTTGTAATTACACGCTTAAAAATTTTGCCATTTTGATAACCGTG
CAATTGCGCGCTTACGGCCTCGGAACATAAGCGTGTAATTGAGAGGATTT
CCCAGACTGCACAAGCTCTACAAAGACTTTCAAAACTACTAAAATCCACA
TCAAACCAGTCCAGACGGTGTCAATCGAACGAATCGAACGCTGAATCAAT
ATTGATCGCAATCGAACACAATCGAATAATTGCAATTCGATTGTCGAACG
ATTAGGTTAAGATTGCGTTCTACAATCAAATTACAATTATTCGATCGCAC
TCGATTAACAACCCTGGACACCGGCGTACATTGCGCGGTGGGCGTCCGAT
GGGTGTAAGGTGGTATTTTAGGTTAGATCGAAAACACCGTACAACACCAC
CGTACAGAATCTGACCGTACACGGAATTGCCACCGTACGATTGTCCGGTG
GATGTACGCATGCTCACAAGGGTGTCGTGGTCAGTCGGAGTCAAGGAAAA
ATTTGTAATCTTTCCAATAAATAATTTAGTTTAGTTCTTTTCGGGCACGA
TACAAAATAGGTCTCTTTAGATGAAATACCAACCTTGTGCCTGTGTATCC
TCAGGCTTCATTTTTTTACTGATGGGGGGGAGATACTTTAGGCAAAATAG
GTGACGGGTATGTACGAGCCACAAGGGTACTCAAAAGTCTTTCAAAAAGA
GGCCCCCAGAAGTAGACCCAAAATTCACACATTCACGCCAAAATTTTTTC
GCAAATCAAGCAAACCCAATTTTTTAAGAGATCGGGATATTTTTGGAAAA
ATCAGGGCTAAAAACAGGGCAGAAAATATCTGGCGTCTAATCAGCAGACG
TCGAAAAGTCGATAGTTACGCTGGGAACGAAGTTGATGAAATACTTTCCA
TTCGCTTGGCTTTTGTTTCGAGGAGTTTTTCTTTTAGTTTTTGATCGTTC
GGCGATTGAGGGAATCGATTGCAATTTTTGTTCGAAGTTGTTCGATTGAC
AGTCTGGATCAAAACATCAGCCACATATATTTAGACTTCCAGCCAACAGC
CATTTTGTTTCGAAATGAATCTATATTTTCATTTTCCAGGGTTCGAATTA
ACGTATCGCGTTTCGCGATTTGCGATGCGTTTTTGGAAATGTACGAAGCA
AAAATTCAGAAATTCAACAAAATCGCGATACAACATATCAAGAATTTTAC
AGCATTTTGACCCTTGAGCCTCCAAGCTAATACGATGGTTATTTGGCTTG
TAAATTGGTCTTTAGAGTGGAGAATGCATTGTACTGTATATTGATAAAAA
AGCATCGTGAAACCTAAAAAATTTCGCACCTGCGGCGGGCAGAAGAGTGC
GATGCACTTTCAAATCGTTAACTCAATCCCTGTTTTCATTTTTTTTCCTT
TTTTCTGCAAAGTCAGCTTTTTCAATAGATTATGCTTTTCTCTTCCTTTT
TATTATCAACCAAGATCACATATTCTTCCTTTTGTCATTTTGATAACCAA
AGCAAATCCACATGATACTAATTCTTCAGGGTTTGTTAAAAATTAAAAAT
CAGACAACATTTGCTACCGCCAACCGACCAGGGGGGGGGTCATGCAGTTA
CTCCGTGACATTCTGATGGAATCTTACTCACGGCAGACATCCTCATCCTA
CTTTTTGACCCGCATTTTCAAAATCCGATTAGACGGGGGTTCTGTTATTA
TCAGTTAGGTAGGGTCAGGGTTGCTAGTAACGACTTGTCACTGTGCCGGG
TGCATACTCGGCGCTATGGGCCCCGCAGGGTTGCTAGTAACAGCTCGAAT
TTCAGTCAGGTTAAAAAAGGGGTACTTTTACCCATATTATAATAACATTA
CCCCCGTCTTTTTTGTCATTCTATAAGTATTTACACATGCCTCCGACTGG
GGCTCTAGGTCCCCCCCGCCAAATTTAGGTCCCCCCTGAGGAGAACAAGG
TCCCCCCAGCCTGATAAAATTTTAGGTCCCAGTATAGGGGAAAAATTTTA
TGGCATTCACAAAGCTCTATTTACATGTGTGTGCACTTTTAGAGAATGCA
ATAGAATGTCTTCATTTTTGCATTTCAAGGATCAGATCACACTTTGCATG
AAAACATAAAGGTTTAGAGAAATTAAAAAACCAACAGTAAAGAAAAATAT
TTAGGAAGTGTTATTTAGCCCACAGAGTTACATAAACTAATGCAGGTCCC
CCCCATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNGGGGGGGGGGAGTGCGAGCCATGTACAA
ATTTTGTATTCTGCTGTGCAAGTGTGGCTCAACGGATAGCTCGCTGGGTT
TCTGATCAAAGATTCTTTCGTTTGGTGGGTTCGAATCCCGGTCGGGTCGA
TATTTGGAGAAAGTTTGAAGTATCAAATTCATATCGATTTTTGTATTTAA
AAGAATTGTTAGAATAAGTTTATATACTTGGTTTAAGTCACTATTCAAAG
CATTCCACGATTTCTATTTTCATAAATATGACAAAAAATTTATTTTCATG
GAAAAATTTCAGATATTTTTCCAAAAACAATTCAAATTTTCTTCGAAAAA
TTTTAATCTTCCGACAAAAATTTAGGGAAATTTCTCAAAAAAGTGAAAAA
ATGTGCACTTACTCCACTTTGGAGTAACTGTTTTAATTTTTTTAGTTGTT
ACACCACCACATACTAAGTGTCATAGTGTTCACATAGTAACTGCATGACC
CCCCCTGGACCGACTGGATTTTGTTGACTTTGATGATTGTTATTGATATT
GATAACTTTCTATAACCTGACCTATAACTATAACCTTTAACTTTCTATGT
ACCGTCAGTCTATGCTTAAACTCCTATATCAAGATTACGAGATTTGGAGT
GCGGGCAGATTTTACTTTCGTTTTCAGTACAGTGGTTTCACTTTCGATTT
CAAGCCTACATCTTAGCAACAGGGTGCTTGCCCATAGTTACATAGTTACA
GGGGTTTGTGCAAAAAAACAAACATAGAAAATTTTCCAAATCCCCATTTC
GATTAATGCAATGAAAAATGAAACTTTTCCATATGTTTCACTTTTTTGCA
CCTATTCTTCAAAATGAAAATATTTAAGATTTTAAGTTTTTATTTGTTGA
CAATTTAACTCTCGCATCAAATTCCCGTTTTCTTCTCAACAAACAAACCA
CTCAGCCAGATAAGTGGCTGCATGGCCGCAAGTTAATGCACAGTCGACTA
AGTTTGTGTGAAAGTTGGCCGAATGTATAGGGATGACGCGCCCATGTGAT
TGCCGGATCATTTAAGTATGTCCTGCAGACCACGCGTTCAGTTCAGGGTA
AGTCTCAAAAAGTAATGTTAAAATCCCTGGACACGCAACAAGAAAATCCC
CGGAGTCTGGGGAAACGGCAGGGTCTGGACTAAGTCATTTTTGGATAAAT
TTCAGCTTTGAAAGATTAGCAAAATTCTGTGACGGACGAGAAATCTTGTC
CGTCACACATATGCCTGTCTTTTATCCACTCAATCTTAATTTTAGCTTTC
TAAATTCTTATCAATTTACTGTAAAAGTGTTAGTCTAGAATGGAAATATA
TGATTTGAAAATTTCAAGCTATGAACATGTGAGATGGATTGGACACAATT
TTTTTGTTTTCAGCTGGTCAAAATTTTCTTACGGGTACAGCTTAAACCTC
TGAAGACCCTTGAAAATTAACCATCCATGAAATAGTCCTCCCACGGAAAA
CTCTTCAATAAGAATCTTGTTGTGCACCAGAAAAGTCAAAAGCTAAATTT
TCCTGATACAGCACCCTATTTCAACTTTGTCTCACTACTTTTTTTGTCGT
TCCCAGCCCGCTCTTGGCGATGCATGGACCTCAAAAAAAATAAGATTGCA
TATTCGTCAGATTGTTTGTTTTCACGCAACCCTTTAAGATTTTTTGGATA
ACAAAATTTTGAATTTTTGCCTCTGAAAATCTGGCCCAGTCATGTTCTGG
TCCAGTCATGTTCAGGTCAAGTTCAAGATTTTTTCCAGTTCAAAAATGAT
TAATAGATGGTATATGATTTCTAGTTTTTGATTTTTTCTCTTAAACTGAT
TTGCATTCTCTAATGAGTGCAGTCCATTTAAAATTATCTAGTGTACCATA
AAAGTTCAAGATCACTTTTCCAATTATTGACCAATCAATAACCAGATAAC
CAATCGATGAATTGAATTGATAACTAATCAAATGGAACCCAGAAAAACAA
AGAGGACTATTAGGAACCTATAAAAGCCAGAACTCATGACAAAAATATTT
CTGGCTTTTATTGCATATCAAAGTGAAAACATTATCATTGTCAAACTTGG
TGGAGCACAAAAGCACCACGTAAAAATAATAAGAGATTGAAATATACAGC
ATAATTTCAAGGATGTAAACAATGCTGAACTGGGATTTCAGATCTGTCGG
CCTTCCCTTGCATGACAATTGTCAATTATGATTTAGGTGTTGTGGTATAG
TAGTCATTGGGTAGTCACCAACCCCAGATGCAGATAAGGTACTATTTGAA
AGCCTCCATGGTTGCAAAAATGGGCTTCAGAGCCTCCTTCAACTCAACCA
AATGGAAATTATATTTCAAACATTCCTCTTATTATAGTAAGAAGTTAATA
AAAGCCCTCTCTGTAATCGATGGTATGCCATTTCTAGTTTTTGACCTTCT
CCAATCAGAATGCAGTCCGCTTGATTCTGCTTACTCCTTAAGCTATATAA
AATCTATCTAATCTACATCATGCGAGAAAATCTCTAGTAGAAAAAAGGTT
AATCCTGTATTTGCCAGTGAAGGTACAACTTCCTAATCACATGAAAACAC
AAGAGCAAAGTCTATTTCATGTAAGGGAAGAAATTTTCGCGGAATTTAAT
TTCGCGAATTTGGGCGTAATTCGCGAAATTAAATTCCGCGAAACGCACCA
AAATGGCGTAATNTCATGTAAGGGAAGAAATTTTCGCGGAATTTAATTTC
GCGAATTTGGGCGTAATTCGCGAAATTAAATTCCGCGAAACACACCAAAA
TGGCGTAATCGCGAAATTAAATTCCGCGAAATTCGATTCCCCGAAATTCG
ATTCTTTTTTCTTCTTTTATTTTGTTGTTATTTATTGACCAGGTATTACC
AAAAAAGATGGACAAAATTGTTATTATTTTGTTATTAAAGTTTGTTAATG
TGACTGAAATATGTCTTGAAATCGATGGCAAATATGAAAAACATTTTCTC
TGTAAAAAAAATTCTTTTGAAATTTCTCAATCGCGAAATTAAATTCCATG
AAACTTTTGAAATCGGCTCATTCGCGAAATTAAATTCCTAGAAATTTGCC
ATTTTGAAACTCTGATTCGATTAAATTCCGCGAAAATTTCTTCCCTTAAG
GTACCAAGAAAATTTTCGATATTTCATTACATGCTGCTTTTTTATAAATT
TCCAAAGTAAAGAAAAGCTTTAGAAACATGGGTTTGCTCTTTCATTCTCT
AGAGAGACTAAGCTGTAATTTCGAAACTTTGTATGTTGAGGTAAATTTCA
ATTTTTTCTGAAATTGAAAGGTTTGCTAATCTAGGCTGTTTTAGCCCTAT
TCAACCAGCCATTCAACAATTTACAAGTCATTTTTAAACTTCTATTTTTG
TTCAATTATAGCTGAGTTGATGGTGGACAAAGCCATGGAACTCAAAGCTG
TCGGCGGAACTTTTGGTGGGAATGTGAAACCAACACCATTCATTTGCTTA
GTATTGAAAATGTTACAGATCCAACCCGAAAAAGATATCGTGGTAGAATT
CATTCGAAACGAGGATTACAAGTTTGTGTTTTTTTGTTTTGTTTTTGTAC
AGTGTTTTTATAGTTCTTTAATCTCTGCAAAGTATGAAAAGTTTCTTTTT
TGTTGTCTCAAATTTAGTAAAATTTGGAGGATTTTGGCTTACTTGTTGTA
AAAAGTTCACTATCCGTCTGAGACAAATATAAACATTGCCTTCAATCACC
GCTATTTATATTTTTCAAAATCAATTAATATTTGCTTACATAATAGGAAA
GGCGATTTGGAACTACTATAAAAAGAGAAGGCAATTTTATATTTGAAACT
TTTAATTCTTTTTCATAGATACGTCAGAGCGCTTGGTGCATTCTATATGC
GACTTGTGGGCACATCACTCGATTGTTATAAATATTTGGAACCTTTATAT
AATGACTATCGAAAGATGCGGAAAAAGGATAAAGTTGGAGGTAAGTTAAC
TTATACTAGACATCGGGGCTTTTTTCTACGCAGTAACGTCTATTTCACTT
AGCGACTAAGTTGTAGCGCAAGGTTTTTCGGGCTCCAAACATTTGAATTT
TTGACGCCAATTTAAATTCTGCTCCTATGAAAGAATCGAATCAAAAT Coding sequence (CDS) from alignment at sc0000601:138889..148035- >TCONS_00027043 ID=TCONS_00027043|Name=TCONS_00027043|organism=Clytia hemisphaerica|type=CDS|length=1593bp|location=Sequence derived from alignment at sc0000601:138889..148035- (Clytia hemisphaerica)
ATACGTCAGAGCGCTTGGTGCATTCTATATGCGACTTGTGGGCACATCAC
TCGATTGTTATAAATATTTGGAACCTTTATATAATGACTATCGAAAGATG
CGGAAAAAGGATAAAGTTGGAGGTAAGTTAACTTATACTAGACATCGGGG
CTTTTTTCTACGCAGTAACGTCTATTTCACTTAGCTGAGTTGATGGTGGA
CAAAGCCATGGAACTCAAAGCTGTCGGCGGAACTTTTGGTGGGAATGTGA
AACCAACACCATTCATTTGCTTAGTATTGAAAATGTTACAGATCCAACCC
GAAAAAGATATCGTGGTAGAATTCATTCGAAACGAGGATTACAATTCAGT
TTCGTTTTCCAATTGATAAAAGAAATTATTTCTAGTCTATATCAAATCAA
GATGGCGAACAGAACTGTGACTGACGCAAAAACTGTCCGTGGTACAAATC
CACAATACCTGGTCGAAAAGATCACGAGAACACGTATTTACGAATGCAAA
TATTGGAAGGAACATTGCTTCGCCCTAACAGATACGTCAGAGCGCTTGGT
GCATTCTATATGCGACTTGTGGGCACATCACTCGATTGTTATAAATATTT
GGAACCTTTATATAATGACTATCGAAAGATGCGGAAAAAGGATAAAGTTG
GAGGTAAGTTAACTTATACTAGACATCGGGGCTTTTTTCTACGCAGTAAC
GTCTATTTCACTTAGCTGAGTTGATGGTGGACAAAGCCATGGAACTCAAA
GCTGTCGGCGGAACTTTTGGTGGGAATGTGAAACCAACACCATTCATTTG
CTTAGTATTGAAAATGTTACAGATCCAACCCGAAAAAGATATCGTGGTAG
AATTCATTCGAAACGAGGATTACAATTCAGTTTCGTTTTCCAATTGATAA
AAGAAATTATTTCTAGTCTATATCAAATCAAGATGGCGAACAGAACTGTG
ACTGACGCAAAAACTGTCCGTGGTACAAATCCACAATACCTGGTCGAAAA
GATCACGAGAACACGTATTTACGAATGCAAATATTGGAAGGAACATTGCT
TCGCCCTAACAGATACGTCAGAGCGCTTGGTGCATTCTATATGCGACTTG
TGGGCACATCACTCGATTGTTATAAATATTTGGAACCTTTATATAATGAC
TATCGAAAGATGCGGAAAAAGGATAAAGTTGGAGGTAAGTTAACTTATAC
TAGACATCGGGGCTTTTTTCTACGCAGTAACGTCTATTTCACTTAGCTGA
GTTGATGGTGGACAAAGCCATGGAACTCAAAGCTGTCGGCGGAACTTTTG
GTGGGAATGTGAAACCAACACCATTCATTTGCTTAGTATTGAAAATGTTA
CAGATCCAACCCGAAAAAGATATCGTGGTAGAATTCATTCGAAACGAGGA
TTACAATTCAGTTTCGTTTTCCAATTGATAAAAGAAATTATTTCTAGTCT
ATATCAAATCAAGATGGCGAACAGAACTGTGACTGACGCAAAAACTGTCC
GTGGTACAAATCCACAATACCTGGTCGAAAAGATCACGAGAACACGTATT
TACGAATGCAAATATTGGAAGGAACATTGCTTCGCCCTAACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027043-exon-sc0000601-1575043694:147849..148035 | TCONS_00027043-exon-sc0000601-1575043694:147849..148035 | Clytia hemisphaerica | exon |
| TCONS_00027043-exon-sc0000601-1575043694:139465..139624 | TCONS_00027043-exon-sc0000601-1575043694:139465..139624 | Clytia hemisphaerica | exon |
| TCONS_00027043-exon-sc0000601-1575043694:138889..139167 | TCONS_00027043-exon-sc0000601-1575043694:138889..139167 | Clytia hemisphaerica | exon |
| TCONS_00027043-exon-sc0000601-1510915933:147849..148035 | TCONS_00027043-exon-sc0000601-1510915933:147849..148035 | Clytia hemisphaerica | exon |
| TCONS_00027043-exon-sc0000601-1510915933:139465..139624 | TCONS_00027043-exon-sc0000601-1510915933:139465..139624 | Clytia hemisphaerica | exon |
| TCONS_00027043-exon-sc0000601-1510915933:138889..139167 | TCONS_00027043-exon-sc0000601-1510915933:138889..139167 | Clytia hemisphaerica | exon |
| TCONS_00027043-exon-sc0000601-1491911889:147849..148035 | TCONS_00027043-exon-sc0000601-1491911889:147849..148035 | Clytia hemisphaerica | exon |
| TCONS_00027043-exon-sc0000601-1491911889:139465..139624 | TCONS_00027043-exon-sc0000601-1491911889:139465..139624 | Clytia hemisphaerica | exon |
| TCONS_00027043-exon-sc0000601-1491911889:138889..139167 | TCONS_00027043-exon-sc0000601-1491911889:138889..139167 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000601 | supercontig | sc0000601:138889..148035 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR005037 | PRP38 |
Blast
BLAST of TCONS_00027043 vs. Swiss-Prot (Human)
Match: PR38A (Pre-mRNA-splicing factor 38A OS=Homo sapiens GN=PRPF38A PE=1 SV=1) HSP 1 Score: 237.269 bits (604), Expect = 5.679e-77 Identity = 105/137 (76.64%), Postives = 122/137 (89.05%), Query Frame = 1
Query: 58 MANRTVTDAKTVRGTNPQYLVEKITRTRIYECKYWKEHCFALTAELMVDKAMELKAVGGTFGGNVKPTPFICLVLKMLQIQPEKDIVVEFIRNEDYKYVRALGAFYMRLVGTSLDCYKYLEPLYNDYRKMRKKDKVG 468
MANRTV DA ++ GTNPQYLVEKI RTRIYE KYWKE CF LTAEL+VDKAMEL+ VGG +GGN+KPTPF+CL LKMLQIQPEKDI+VEFI+NED+KYVR LGA YMRL GT++DCYKYLEPLYNDYRK++ +++ G
Sbjct: 1 MANRTVKDAHSIHGTNPQYLVEKIIRTRIYESKYWKEECFGLTAELVVDKAMELRFVGGVYGGNIKPTPFLCLTLKMLQIQPEKDIIVEFIKNEDFKYVRMLGALYMRLTGTAIDCYKYLEPLYNDYRKIKSQNRNG 137
The following BLAST results are available for this feature:
|
