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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027044 ID=TCONS_00027044|Name=TCONS_00027044|organism=Clytia hemisphaerica|type=transcript|length=2190bp
cccggccttaatgcgtttaccaaaaccagcaagtgacgaatatttttccc
cgacgaaaattttccctgacgaaaactttccccgacgaagttttccccga
taaggtatcctGACCCTTGCTTTTGTTTGAAGCAacatcaatgtttttgt
ttcttcaGGAAATTTCCAATTTGAAGAATCGAACAACTTTACTAAATGAG
AcgtatttaaagaaatttgagaATTTGAAGACgttattgaatgaaaaaga
cGCGATTGCTACTAAAGCACCATCGAAAGATAGCTTGAAAGCCACACCTT
CTCCTTCTCCTACCACCACTACCACAACAAAGAAGCCAACAACCTTTCAT
TCTAGCTCTGAAACCACACTCCCGAACACTAAAGACGACAGTCCGAAAAA
TGATCTAGAAACGATAGATTCGTTAGCTCAAGACTTGAACAAGAGAAGAA
GGTCTATTTATAAAAAGCGAAACGCCTGAATGATGACATTATTAGAGAGA
TGACAGTAACGAGTAGCTAGTCTAGCTGAGAAAGACTGGATGATTTGATA
AAGCTGACGCGGAAAGATAGTCTGGACTAGGAGAATGGATCCATTAAAAT
TGCATTAACTCTACGTCAAATACAATTGGATGAGAGCCTTTTGACGTGAA
CTATTTATTTGGATGTGACAGACAGGAATCTCATCGAATCATCATAACAT
CGTTGGCGAAAAATGAAAAGCTaagataaaataataataaaaacaacata
TACTTTCGTTGGTAAAGTAATAAAGAGTGTAACAAAAACCTGATGACTTT
TTTGGTTTACAGATTTTAAAACTGGCTTGGAGGCCTTAGAAACAAACCTA
GTAAATTGTGGCTATTTGTAAATTGAACATTGAATCATGGCTGAATCGTA
GGATAATGTAAAACTCATTTTAAAAATGGGTAATTATTAGATTGATAAAT
TATTTACCGAAGGCACACTATTGAGTTTAAGGTTCGAGGGGCTAGAGAGG
GGTATTGAACCTTtaccaagcaagaaaaagtgaaacgcATTGAAATTGGA
ATTGGAATTGGCTTTCTTTGTTTATACGTGGTACATGAAatcttttgata
tattttactttcaatacGGTGTTTATGTCTGTGGGTTgagcgttttggat
gggaagcAACTGGAGATAAGTGACTTCATCTCTCATCTAagagattcctc
tctagcctgTTGGGCTTCGAACTCAATGCAACACACGTGTTTCCGAGGTT
ATTATTATCCAAAGATAAATACAGTAGGTAATGGCGAGTATACATGGCTC
TAGTGTACGCTTTGAgtatttatgatatgcaccactgcaatttcttctga
cattacatcacggacccaatagctgattggttgtaagtgacgtaaaatca
gtcaatacttcacgttcaaccaatcagctgttggttcCGTGGAAGACATC
GCAATGGtggcatatcatgaattgcatGGTGTTACTGACTAGGTTTTATT
CTCATTTTTCAGGGATGATCATAACACTTgaatagattttaaaaaaagGA
GTTGTTTCCCGTGGTTGAAGACCACCAGtttaattttgttaaaaattgtt
TTACGATCAATACTTTAGCTTCTTCGTTACCGAAACGGTGACAACAGACA
TTAGACCAGAACGTAAGACCaagaacatataaacgactggacatccatct
cctttgtcttgtTGAAGATAACagtgctagcttcgttgccgcctcgttaa
aagcataagatgaaacaatagattttgatgatataccacttgggaatacc
ttacTAAAAACGTCAAAACCTCGACAAAAGTCTcggttgttctactcttc
tcaagtcttttatctatatcataacaaagataacagaggcaaaattatcg
tcagcttgtcaaaactccgaccaatatttcaaaattttgacttaaaagtg
tcgaaTAATTTTAgcgagtgtcacattctaattgaTATTcatatgacaca
ggctctcaactttcgcaagctatttttttcaagtcgtaaaaaaattattg
gagtgacaaaagggattcaaaagtatacacgcagttgaaactttgaattt
cagagttgaaaaatgttgataaaatatattgcaaacttgtgaaaaaattc
gaaaataatgtttttgtgaattacgagtaatgttcaagct Run BLAST on NCBI protein sequence of TCONS_00027044-protein >TCONS_00027044-protein ID=TCONS_00027044-protein|Name=TCONS_00027044-protein|organism=Clytia hemisphaerica|type=polypeptide|length=112bp
MFLFLQEISNLKNRTTLLNETYLKKFENLKTLLNEKDAIATKAPSKDSLK
ATPSPSPTTTTTTKKPTTFHSSSETTLPNTKDDSPKNDLETIDSLAQDLN
KRRRSIYKKRNA Run BLAST on NCBI transcript from alignment at sc0000601:187252..189759- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027044 ID=TCONS_00027044|Name=TCONS_00027044|organism=Clytia hemisphaerica|type=transcript|length=2508bp|location=Sequence derived from alignment at sc0000601:187252..189759- (Clytia hemisphaerica)
CCCGGCCTTAATGCGTTTACCAAAACCAGCAAGTGACGAATATTTTTCCC
CGACGAAAATTTTCCCTGACGAAAACTTTCCCCGACGAAGTTTTCCCCGA
TAAGGTATCCTGACCCTTGCTTTTGTTTGAAGCAACATCAATGTTTTTGT
TTCTTCAGGAAATTTCCAATTTGAAGAATCGAACAACTTTACTAAATGAG
ACGTATTTAAAGAAATTTGAGAATTTGAAGACGTTATTGAATGAAAAAGA
CGCGATTGCTACTAAAGGTATGTTTGTTGTTTTTTTATCTCTCATTTTGT
ACTCTACCGAAAACTTTTACGACAAGATACTTAGATAGTACCAGTACTAT
AAAAAAAACCCAAATTTTGAAAATGTTTTGTTGGGACTAATGAATGATAG
ACAGGCGAATCAAGACTCTTATTTTGAAACTGTAGGATTACATGAAATAA
CTTAAATGTTTCGAGGGGTATAAAGTTTGAGTAAAATATGTTTGAACTTG
CAACATGGTTTTTATCTTATTCAGTATAGCCGCGTTAGCAGGATTTCATT
CAGCCTTCAAACACAATTTTTTAACCCTCTTTTAGCACCATCGAAAGATA
GCTTGAAAGCCACACCTTCTCCTTCTCCTACCACCACTACCACAACAAAG
AAGCCAACAACCTTTCATTCTAGCTCTGAAACCACACTCCCGAACACTAA
AGACGACAGTCCGAAAAATGATCTAGAAACGATAGATTCGTTAGCTCAAG
ACTTGAACAAGAGAAGAAGGTCTATTTATAAAAAGCGAAACGCCTGAATG
ATGACATTATTAGAGAGATGACAGTAACGAGTAGCTAGTCTAGCTGAGAA
AGACTGGATGATTTGATAAAGCTGACGCGGAAAGATAGTCTGGACTAGGA
GAATGGATCCATTAAAATTGCATTAACTCTACGTCAAATACAATTGGATG
AGAGCCTTTTGACGTGAACTATTTATTTGGATGTGACAGACAGGAATCTC
ATCGAATCATCATAACATCGTTGGCGAAAAATGAAAAGCTAAGATAAAAT
AATAATAAAAACAACATATACTTTCGTTGGTAAAGTAATAAAGAGTGTAA
CAAAAACCTGATGACTTTTTTGGTTTACAGATTTTAAAACTGGCTTGGAG
GCCTTAGAAACAAACCTAGTAAATTGTGGCTATTTGTAAATTGAACATTG
AATCATGGCTGAATCGTAGGATAATGTAAAACTCATTTTAAAAATGGGTA
ATTATTAGATTGATAAATTATTTACCGAAGGCACACTATTGAGTTTAAGG
TTCGAGGGGCTAGAGAGGGGTATTGAACCTTTACCAAGCAAGAAAAAGTG
AAACGCATTGAAATTGGAATTGGAATTGGCTTTCTTTGTTTATACGTGGT
ACATGAAATCTTTTGATATATTTTACTTTCAATACGGTGTTTATGTCTGT
GGGTTGAGCGTTTTGGATGGGAAGCAACTGGAGATAAGTGACTTCATCTC
TCATCTAAGAGATTCCTCTCTAGCCTGTTGGGCTTCGAACTCAATGCAAC
ACACGTGTTTCCGAGGTTATTATTATCCAAAGATAAATACAGTAGGTAAT
GGCGAGTATACATGGCTCTAGTGTACGCTTTGAGTATTTATGATATGCAC
CACTGCAATTTCTTCTGACATTACATCACGGACCCAATAGCTGATTGGTT
GTAAGTGACGTAAAATCAGTCAATACTTCACGTTCAACCAATCAGCTGTT
GGTTCCGTGGAAGACATCGCAATGGTGGCATATCATGAATTGCATGGTGT
TACTGACTAGGTTTTATTCTCATTTTTCAGGGATGATCATAACACTTGAA
TAGATTTTAAAAAAAGGAGTTGTTTCCCGTGGTTGAAGACCACCAGTTTA
ATTTTGTTAAAAATTGTTTTACGATCAATACTTTAGCTTCTTCGTTACCG
AAACGGTGACAACAGACATTAGACCAGAACGTAAGACCAAGAACATATAA
ACGACTGGACATCCATCTCCTTTGTCTTGTTGAAGATAACAGTGCTAGCT
TCGTTGCCGCCTCGTTAAAAGCATAAGATGAAACAATAGATTTTGATGAT
ATACCACTTGGGAATACCTTACTAAAAACGTCAAAACCTCGACAAAAGTC
TCGGTTGTTCTACTCTTCTCAAGTCTTTTATCTATATCATAACAAAGATA
ACAGAGGCAAAATTATCGTCAGCTTGTCAAAACTCCGACCAATATTTCAA
AATTTTGACTTAAAAGTGTCGAATAATTTTAGCGAGTGTCACATTCTAAT
TGATATTCATATGACACAGGCTCTCAACTTTCGCAAGCTATTTTTTTCAA
GTCGTAAAAAAATTATTGGAGTGACAAAAGGGATTCAAAAGTATACACGC
AGTTGAAACTTTGAATTTCAGAGTTGAAAAATGTTGATAAAATATATTGC
AAACTTGTGAAAAAATTCGAAAATAATGTTTTTGTGAATTACGAGTAATG
TTCAAGCT Coding sequence (CDS) from alignment at sc0000601:187252..189759- >TCONS_00027044 ID=TCONS_00027044|Name=TCONS_00027044|organism=Clytia hemisphaerica|type=CDS|length=678bp|location=Sequence derived from alignment at sc0000601:187252..189759- (Clytia hemisphaerica)
CACCATCGAAAGATAGCTTGAAAGCCACACCTTCTCCTTCTCCTACCACC
ACTACCACAACAAAGAAGCCAACAACCTTTCATTCTAGCTCTGAAACCAC
ACTCCCGAACACTAAAGACGACAGTCCGAAAAATGATCTAGAAACGATAG
ATTCGTTAGCTCAAGACTTGAACAAGAGAAGAAGGTCTATTTATAAAAAG
CGAAACGCCTGAATGTTTTTGTTTCTTCAGGAAATTTCCAATTTGAAGAA
TCGAACAACTTTACTAAATGAGACGTATTTAAAGAAATTTGAGAATTTGA
AGACGTTATTGAATGAAAAAGACGCGATTGCTACTAAAGCACCATCGAAA
GATAGCTTGAAAGCCACACCTTCTCCTTCTCCTACCACCACTACCACAAC
AAAGAAGCCAACAACCTTTCATTCTAGCTCTGAAACCACACTCCCGAACA
CTAAAGACGACAGTCCGAAAAATGATCTAGAAACGATAGATTCGTTAGCT
CAAGACTTGAACAAGAGAAGAAGGTCTATTTATAAAAAGCGAAACGCCTG
AATGTTTTTGTTTCTTCAGGAAATTTCCAATTTGAAGAATCGAACAACTT
TACTAAATGAGACGTATTTAAAGAAATTTGAGAATTTGAAGACGTTATTG
AATGAAAAAGACGCGATTGCTACTAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027044-exon-sc0000601-1575043694:189493..189759 | TCONS_00027044-exon-sc0000601-1575043694:189493..189759 | Clytia hemisphaerica | exon |
| TCONS_00027044-exon-sc0000601-1575043694:187252..189174 | TCONS_00027044-exon-sc0000601-1575043694:187252..189174 | Clytia hemisphaerica | exon |
| TCONS_00027044-exon-sc0000601-1510915933:189493..189759 | TCONS_00027044-exon-sc0000601-1510915933:189493..189759 | Clytia hemisphaerica | exon |
| TCONS_00027044-exon-sc0000601-1510915933:187252..189174 | TCONS_00027044-exon-sc0000601-1510915933:187252..189174 | Clytia hemisphaerica | exon |
| TCONS_00027044-exon-sc0000601-1491911889:189493..189759 | TCONS_00027044-exon-sc0000601-1491911889:189493..189759 | Clytia hemisphaerica | exon |
| TCONS_00027044-exon-sc0000601-1491911889:187252..189174 | TCONS_00027044-exon-sc0000601-1491911889:187252..189174 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000601 | supercontig | sc0000601:187252..189759 - |
Blast
The following BLAST results are available for this feature:
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