TCONS_00027058 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027058
Unique NameTCONS_00027058
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length571

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027058 ID=TCONS_00027058|Name=TCONS_00027058|organism=Clytia hemisphaerica|type=transcript|length=571bp
AAGAAAGAAAGAACTGTTTACCTGAGATGCCAAGACTAATGGTAGAAGCT
AAGACATGAAAATCGTTTATCGTGTACGGTAGCAAGATTTTGACGGTGGA
GCCGCTTCCACTCGGTTTCTTATGTTTAATGGTTTTGTTTTACTTGCTCC
ACGAATACTATCCAACAGACAGAGCTGATCACCTACATGCATGACAATCT
AGCACCGGATCGTCTTCAAAGACACTTGTTGTAAAGATTCTCATTACGAA
AGCTTTAATAATGCAGTAAAAGACTTCCGAATTTCTACCCAGCGATTTCG
ACACCTCTATTTCACAGAGCCGCAGAGACCCCCGCccaactgaaaaattt
gacaaaaatttcgtcccggtaggaaaaaaacctgaaatttcagtcccact
gctGGGAAATGAACTTTGATTCCTTCCCTATTCGAAATAAACTATTCGca
ctgaaatttttatccccaatgAGGAAAagagttccaccggggctgtgaga
caggggtgtatttcaTTTTGTGGTTTATTTTTATAACTACTATCGAGTTT
TTTAGAACTTTTGTAGAGCTT
Run BLAST on NCBI

transcript from alignment at sc0000605:3335..3905

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027058 ID=TCONS_00027058|Name=TCONS_00027058|organism=Clytia hemisphaerica|type=transcript|length=571bp|location=Sequence derived from alignment at sc0000605:3335..3905 (Clytia hemisphaerica)
AAGCTCTACAAAAGTTCTAAAAAACTCGATAGTAGTTATAAAAATAAACC
ACAAAAtgaaatacacccctgtctcacagccccggtggaactctTTTCCT
cattggggataaaaatttcagtgCGAATAGTTTATTTCGAATAGGGAAGG
AATCAAAGTTCATTTCCCagcagtgggactgaaatttcaggtttttttcc
taccgggacgaaatttttgtcaaatttttcagttggGCGGGGGTCTCTGC
GGCTCTGTGAAATAGAGGTGTCGAAATCGCTGGGTAGAAATTCGGAAGTC
TTTTACTGCATTATTAAAGCTTTCGTAATGAGAATCTTTACAACAAGTGT
CTTTGAAGACGATCCGGTGCTAGATTGTCATGCATGTAGGTGATCAGCTC
TGTCTGTTGGATAGTATTCGTGGAGCAAGTAAAACAAAACCATTAAACAT
AAGAAACCGAGTGGAAGCGGCTCCACCGTCAAAATCTTGCTACCGTACAC
GATAAACGATTTTCATGTCTTAGCTTCTACCATTAGTCTTGGCATCTCAG
GTAAACAGTTCTTTCTTTCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015205XLOC_015205Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027058-exon-sc0000605-1491911889:3335..3905TCONS_00027058-exon-sc0000605-1491911889:3335..3905Clytia hemisphaericaexon
TCONS_00027058-exon-sc0000605-1510915933:3335..3905TCONS_00027058-exon-sc0000605-1510915933:3335..3905Clytia hemisphaericaexon
TCONS_00027058-exon-sc0000605-1575043694:3335..3905TCONS_00027058-exon-sc0000605-1575043694:3335..3905Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000605supercontigsc0000605:3335..3905 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.14448	0.412464	0.216971	0.21912	0.364236	0.58625	1.17952	1.53498	3.23119	1.42365	2.51461	2.63467	1.80721	3.25681	1.43847	1.11061	3.12058	3.92496	0.290338	0.681215	2.53476	3.40292	0.954184	1.51301	1.34262	1.33506	1.42808	0.395663	0.685244	0.27107
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027058 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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