TCONS_00027078 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027078
Unique NameTCONS_00027078
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1413

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027078 ID=TCONS_00027078|Name=TCONS_00027078|organism=Clytia hemisphaerica|type=transcript|length=1413bp
ATTTTCAGagtgacaaaatattttttaactcgaacacCCTTTTTGCTGTT
ACACATATGTGTTTTTTGTCcttgtttgcattttttcatTGAGGAGTGGT
TTTCTTTTACCGTTGACTTTTGATCAAGTGACAACGAGGTAGCACAAGCG
TTTTTAGAATCTCGGGCGGAACCAGAAGGCGAAGAGGGCGGTTCAGAAGA
AGAGATGCAATACACAACGCCCCACGGTACCAAAATTACAATCAACCATG
AAGCAGCGGGCCGCATTCATTCCATAGTcgtcaaagacaagaaacaacaA
CCTAAACCTAAACCTAAAGTacaaaaaaacactaaaatccGCATCGCTTC
TCCGCGCATGCGTGCAACTTCACCGCGCGTACGCGCTGAGAATATTTCGC
CAACTATTATAAGTATGTCTCAAGATGACTTAGTCCATTTAGTTGTTGAA
ACAAACCAACCAGATTCTGATATGCTGTCACGTGAGCATGTTGTAGTGCC
TGAACCAATCATAATGCCCAAACAAGCACCCAAAACAATGGCCAAACCAC
CGACACCGACAAAGACCAAACCACCGACGCCAACGAAACCTAAACCACCA
AGTCCAACTAAGAAACAAAACAATGTCGGCAAACTACCGCCACAACCAAA
GAAATTCAAGGATCCAAACTTTCTGGACAAACATAAAAAGCAAGTCACTG
ATTTTGATGCCATCATGAACAAACGTAAGAAGTTTGTGGACACGATGGAT
GACGCGGGAAGATTATTGGGTCAGATCGCTCATCGTGATGAAAAGCTTGC
GGGTGGTCGTCGTGAATTATCGAAACACTGGCTCAAGATCAAGGATGCTG
TACATAAGCGACAATACCTGAAGTTCAACGATAAACCAATGCGCTGACTG
GACATCTTTCGGATTGTCAAAGAAGATTCCATtgctattttattttattc
ttttagcACGCTTTATAAGTATTTGGTGATCAAcgagtttttataagatt
tctTTTCTGCATTGTAAGATTTTAGGCCATTTTATTGTCCTTTTGTCCTT
CAATTTAGTTCAAGTGCATCCAAATAACGTTGGATGAATGTTGGAACAAC
GTTGTATATCAGCTGCTTTTGTGTTAATCCTTTGTGGTGGTCCTGAATAA
TTTTCTTGTGGAATTTTGGTAGCACCTTTTGTGCAATGctaattgttttc
ttttggtTCGTGTACATTTTTTCGAGGAGCACTTTGCTTGTGGCTAGGAT
TTTTTTGTCAGTGTGTGTGAGGTAGGCCCATGAGTAATATTATTTTACAT
TACTTTGTATATTTAATAGAAAgagattttaagaatttttaacGCTaact
ttgtttttgtaaatttccCGATGATGCCCTTCAAATCTtagtaaaaaaga
ttttttttttttt
Run BLAST on NCBI

transcript from alignment at sc0000606:54793..59201+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027078 ID=TCONS_00027078|Name=TCONS_00027078|organism=Clytia hemisphaerica|type=transcript|length=4409bp|location=Sequence derived from alignment at sc0000606:54793..59201+ (Clytia hemisphaerica)
ATTTTCAGagtgacaaaatattttttaactcgaacacCCTTTTTGCTGTT
ACACATATGTGTTTTTTGTCcttgtttgcattttttcatTGAGGAGTGGT
TTTCTTTTACCGTTGACTTTTGATCAAGTGTAAGGAATTTTAACAATATT
ATTTTACTGATTTTACTGAAAACCAGACTAATACAAAAGCtgttcaaatt
gaaattacaCTTTTGGTTTCCTGTCTGCTGTTTCGTGCTCTCACATCTGA
GTTTTCTGAGGCTCTATCAAATTTTGTTCATGTTCATTGTTCATATTTAT
ATGAATTAAAATGAAGATGCCCAGAAAATTCCCCATCCATCATTGAGAAT
GCGGGTACTCACTCTCGTTAAAAAACATTTGATCTTCACTTTAGGACAAC
GAGGTAGCACAAGCGTTTTTAGAATCTCGGGCGGAACCAGAAGGCGAAGA
GGGCGGTTCAGAAGAAGAGATGCAATACACAACGCCCCACGGTACCAAAA
TTACAATCAACCATGAAGCAGCGGGCCGCATTCATTCCATAGTcgtcaaa
gacaagaaacaacaACCTAAACCTAAACCTAAAGTacaaaaaaacactaa
aatccGCATCGCTTCTCCGCGCATGCGTGCAACTTCACCGCGCGTACGCG
CTGAGAATATTTCGCCAACTATTATAAGTATGTCTCAAGATGACTTAGTC
CATTTAGTTGTTGAAACAAACCAACCAGATTCTGATATGCTGTCACGTGA
GCATGTTGTAGTGCCTGAACCAATCATAATGCCCAAACAAGCACCCAAAA
CAATGGCCAAACCACCGACACCGACAAAGACCAAACCACCGACGCCAACG
AAACCTAAACCACCAAGTCCAACTAAGAAACAAAACAATGTCGGCAAACT
ACCGGTGAGTTGAAACTTGGTCATGGTTGAAAGTCTGTAAAAATATACTA
CCTTTTGTCGAAGACATTTCGTATTCTcaaagcatagtataagaaagctg
cGGCTGGAATGACAATATCTGAAtatctgttgttctatctctgtcgtatt
tgatgactatttgttgatcaagaaatcagtaacgtagcatctttaatggt
aaattttattggtttgtcgttaatacttattTCTCAGTCcgtttagacat
taatgatatgcccttgataatacacttgcattataaaatcattgtaaagg
aaagatcaacaataagagatttaaacaagcacaaaatagcttggctgaaa
gaactcaaaaatcaataaagtgccttcgaatgccttcacaatttttcagt
gaaatcttttatagaaatcaatgaaaaatttcatcaagataatactgtga
aaatttcaaaacagcaccttgaaaatttatcattcaaactgacaggaaag
ttttttcatcttgaatatagttcttgataattttaattttggcgaaaaac
tattatTTCCAcaaaaatacccctaaaatatgtccaaaattagttcaagt
gttctattgggtacagattcgaagatatctagcaataaaaaaactttcta
cTAATAATAAACTGAGCACTTGATGCTCGGAGACAGACATAGAACAGCAA
TTAATTGAAAaaacaatgcggtacatattccagccatCTTTGATCGAGAT
CTTTCTGTCGTCGTTAAGTGAAATAAGGttcatgatatttttgaaaatgc
tgaaaaaaattCTGACTCGTTTTTAGAACTAATGAGCCTAAAAATCGCAA
CACCGAACATAACGAATAAATTGAGTGGCTCTTAAACAAAagcttttgac
ttttttgtagaAGATGTTAGTTGGTTAACAGGTTGGTACCTTTCCTAGCT
GATCGTACATTCTTATGCAAGCCGAATGTACATtatagcctatttcatag
gattcgtgcatCTGTTATATGTTACTTTCTTCTCAATTTAAAAGGGGAAA
ACATTCTTATATAAGCACAATTTCACGAGAATTTCTTTTCAGCCACAACC
AAAGAAATTCAAGGATCCAAACTTTCTGGACAAACATAAAAAGCAAGTCA
CTGATTTTGATGTAAGTctaaactattttttttcttttaaataaaaacaa
atagagCTAAATTAAtataaatttctgaaaaaattctctttaaaaGAAGT
CCTATCCGATTTTGCCACCGAGGGGGATTTCAACTCCTCTTAAAATTATG
TGATTGCCCTTTGTCAAATTCCTCCTATTACTGAACATGGTTCATTCTAA
TGGCTTCTTTTGCTCGTTGCCGAACATCAGCCATTCTCTGTTGACGGAAA
TAAGCTGCAACAGCTCCATGCTGGAAGACCTCTTTCTGAGaagctttttg
aaatttgaccaTTGCAAAAGTCGCTCCAAAGCAAACGACCAAGGCAAGCG
TTGTGTACATCAAGACGACACCGTCATCCATAACGCTTGGCAAATGTCGT
CCCTTGAAAGATACAACTCTCCAAAAAAGGTCCAAATGGGcgataaattg
ataaaaaatggtCGAAATGGATCTATTGCAAGGGTCTTTAACTTTCGAGC
CAAGAGAGATCGAAATGTATATTTGAAATCATGTGAGTGATATCATGTGA
GAAATCTTGTGAGGTTTTAGCTTTAGAAAATACACAATAGAATTTTTTGA
Ctaagtagaaaaaaaatcttcacttttctcatcttcactttcattttttt
ttcatcctcCATAGGTTTCCACTTAAAGCTATCTTTCCAACAAGTTATTA
CTTTAAATTGTAACATTTTTTTCACCCACATGAAATGTTGAAAAAACGAC
GGATTTCCAATTATTTTAAAACAGTTGAcactcgctaattcgaactctgA
CGGGGATCTTATTTGTTTGATAAacggagagattcgaattagagagagta
ttTTAAGTGGGTTTCTCTCTGACAATGACTGGAATCAAGTTCGAATAAtg
aaaagattcgaataatagaagtttgaATAGGCGAGAGTCGATTGTAGATG
GACTGTAGATAGACTTTAGTAGGTAATATATTTCATTGTAATACATCATA
TTAAACGTTTTTTCCTACAGGCCATCATGAACAAACGTAAGAAGTTTGTG
GACACGATGGATGACGCGGGAAGATTATTGGGTCAGATCGCTCATCGTGA
TGAAAAGGTAGGCGTGTCATATCCCACAGGACGATCTGTTTTCTAAATAT
ATTTCATCTCACAATTCTAGGTCAATTCCCAGTACAAATGTCCTGCCACG
CTTCACTCCAATAGACTCATGTATTATTCAATAATTTAATAATGTCAAAA
ATCTCAAAGTTTGCACTCACTGGGAATTTCAGCCTGTTCTTAAACAAAAA
TTGTACTGTCAATGTCTACATCGAGTGCCAAAATATTTGACAGTAAACAG
TGATTTATGAAATCCCCTGGTCCCCAAACATCAATGGTTGGCTTGCTGAA
GGTGTTTTTCAAGACTTACTGCGCTAATCGTAGCgaggttaaaggtttta
tttttacataagtgtttccgtttcatatcagacacatatttcatatcagg
acagtgtctgcctattgtacattatgctgatataaacaaaaaaatgtttt
ttttcctctttctgaccaatcttgctccacaatcatgtcaatccaatgtc
aaaaagtttgtgaAATAAAGTTGATTAGTAAGCAAACGATTTAATgaata
aagtttttgaataaaCTTCGCTAAATTAATAATTTTATGTATTCCATACT
TTAGAGTCgtatttaaaacttttgaatgaTTTAATCCTTAGCTTGCGGGT
GGTCGTCGTGAATTATCGAAACACTGGCTCAAGATCAAGGATGCTGTACA
TAAGCGACAATACCTGAAGTTCAACGATAAACCAATGCGCTGACTGGACA
TCTTTCGGATTGTCAAAGAAGATTCCATtgctattttattttattctttt
agcACGCTTTATAAGTATTTGGTGATCAAcgagtttttataagatttctT
TTCTGCATTGTAAGATTTTAGGCCATTTTATTGTCCTTTTGTCCTTCAAT
TTAGTTCAAGTGCATCCAAATAACGTTGGATGAATGTTGGAACAACGTTG
TATATCAGCTGCTTTTGTGTTAATCCTTTGTGGTGGTCCTGAATAATTTT
CTTGTGGAATTTTGGTAGCACCTTTTGTGCAATGctaattgttttctttt
ggtTCGTGTACATTTTTTCGAGGAGCACTTTGCTTGTGGCTAGGATTTTT
TTGTCAGTGTGTGTGAGGTAGGCCCATGAGTAATATTATTTTACATTACT
TTGTATATTTAATAGAAAgagattttaagaatttttaacGCTaactttgt
ttttgtaaatttccCGATGATGCCCTTCAAATCTtagtaaaaaagatttt
ttttttttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015219XLOC_015219Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027078-exon-sc0000606-1491911889:54793..54921TCONS_00027078-exon-sc0000606-1491911889:54793..54921Clytia hemisphaericaexon
TCONS_00027078-exon-sc0000606-1510915933:54793..54921TCONS_00027078-exon-sc0000606-1510915933:54793..54921Clytia hemisphaericaexon
TCONS_00027078-exon-sc0000606-1575043694:54793..54921TCONS_00027078-exon-sc0000606-1575043694:54793..54921Clytia hemisphaericaexon
TCONS_00027078-exon-sc0000606-1491911889:55187..55696TCONS_00027078-exon-sc0000606-1491911889:55187..55696Clytia hemisphaericaexon
TCONS_00027078-exon-sc0000606-1510915933:55187..55696TCONS_00027078-exon-sc0000606-1510915933:55187..55696Clytia hemisphaericaexon
TCONS_00027078-exon-sc0000606-1575043694:55187..55696TCONS_00027078-exon-sc0000606-1575043694:55187..55696Clytia hemisphaericaexon
TCONS_00027078-exon-sc0000606-1491911889:56785..56853TCONS_00027078-exon-sc0000606-1491911889:56785..56853Clytia hemisphaericaexon
TCONS_00027078-exon-sc0000606-1510915933:56785..56853TCONS_00027078-exon-sc0000606-1510915933:56785..56853Clytia hemisphaericaexon
TCONS_00027078-exon-sc0000606-1575043694:56785..56853TCONS_00027078-exon-sc0000606-1575043694:56785..56853Clytia hemisphaericaexon
TCONS_00027078-exon-sc0000606-1491911889:57863..57949TCONS_00027078-exon-sc0000606-1491911889:57863..57949Clytia hemisphaericaexon
TCONS_00027078-exon-sc0000606-1510915933:57863..57949TCONS_00027078-exon-sc0000606-1510915933:57863..57949Clytia hemisphaericaexon
TCONS_00027078-exon-sc0000606-1575043694:57863..57949TCONS_00027078-exon-sc0000606-1575043694:57863..57949Clytia hemisphaericaexon
TCONS_00027078-exon-sc0000606-1491911889:58584..59201TCONS_00027078-exon-sc0000606-1491911889:58584..59201Clytia hemisphaericaexon
TCONS_00027078-exon-sc0000606-1510915933:58584..59201TCONS_00027078-exon-sc0000606-1510915933:58584..59201Clytia hemisphaericaexon
TCONS_00027078-exon-sc0000606-1575043694:58584..59201TCONS_00027078-exon-sc0000606-1575043694:58584..59201Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000606supercontigsc0000606:54793..59201 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.32015	0.938971	6.44844	2.5609	0.849104	0.385928	0.000167913	4.59528e-05	0	0	0	0	0	0	0	0	144.12	184.369	0	0.580204	74.5125	88.4956	49.9591	49.2562	38.7609	39.2617	2.26897	2.89626	2.44342	0.138359
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027078 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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