TCONS_00027080 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027080
Unique NameTCONS_00027080
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1076

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027080 ID=TCONS_00027080|Name=TCONS_00027080|organism=Clytia hemisphaerica|type=transcript|length=1076bp
CTCCATTTCACAACTTTTTTCTCATACAgcgatattcaaaattttatttt
accatTTACTACCAAAgttcttccagaaaaatttcataactgttcatttt
cttcatttttattgaaaagtaaagaCAGACATCCTGTGTTATCGAAAGGT
CACTCAAGATACAATGAAACACATTGTAGAAAACAGCTACAAAAGCAACC
TTTTGTAATGTCAACTTCACCTTTATCCATAGGTGTATAGGTCTAGTGTC
TGAAAGTTAAGTTAAGGTTCCTGTGCTGGTTGACGTCTTGTTCTCGTGGT
CTTGGCGACATTATTTTTGTCTGACAAATCCTCCATTTAAAAACAGACTG
GAAACCAGTTTTGAAAGCTTTAATGGGTGTGGACACCAATCAAATGTCAT
TACTCTAAAAATATTCGTATTCAAACAAACTCGTTAAACTCGAAAAAATA
GTACAGGCAAGTTGTTGTTTATTTCCAACCTCGTTGTAAACGCACCATTT
TCGGTTCTCGACGTAAACCGACGTGCGTCCGTCAATTGTGTAATAAAGCT
TGTTATACACGCAGACGAGGCTACATTTTTCCAATTCAGCTCAGGAATTT
CTATCCAGTTGAGGAGAGGTCAATGTCTAATATCCTTGACAACTGAAACA
TCCATAGAGCCTGATCATCAAACAGCTTCAGATTGCTTTTTGATATCCTC
ATCAGAGATTACCTGAGTTCTATTCTCACATTCTACATCTCCTTCAGTGC
ACATTTCCTCGCCAACATAAATACCATTTAAAGCTAGGATACCATCTTTA
TTGACACTATTGTCTTGAAGAGCATTCTCCGAAGAAACAGTCGTTAATGT
GGTCGTAGACAAGAAACTCGGCAGCGTCATCGAGGAAGTTGTGCGATCGC
GCAATGATATGACCGAGATCGCACGATCACGTTGAAATTGTGTGGATGAG
AGTTCGATTGAGGTAATACTTGTTGTTGATATACCACGATCAATAGAATG
GGCGGATTTCATACTTCTGGGCGGAGTGGTGCTTTCACGCCTTATCTTGT
ACGCTACACGTGCGTCTTTGGactag
Run BLAST on NCBI

transcript from alignment at sc0000606:143047..144181+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027080 ID=TCONS_00027080|Name=TCONS_00027080|organism=Clytia hemisphaerica|type=transcript|length=1135bp|location=Sequence derived from alignment at sc0000606:143047..144181+ (Clytia hemisphaerica)
CTCCATTTCACAACTTTTTTCTCATACAgcgatattcaaaattttatttt
accatTTACTACCAAAgttcttccagaaaaatttcataactgttcatttt
cttcatttttattgaaaagtaaagaCAGACATCCTGTGTTATCGAAAGGT
CACTCAAGATACAATGAAACACATTGTAGAAAACAGCTACAAAAGCAACC
TTTTGTAATGTCAACTTCACCTTTATCCATAGGTGTATAGGTCTAGTGTC
TGAAAGTTAAGTTAAGGTTCCTGTGCTGGTTGACGTCTTGTTCTCGTGGT
CTTGGCGACATTATTTTTGTCTGACAAATCCTCCATTTAAAAACAGACTG
GAAACCAGTTTTGAAAGCTTTAATGGGTGTGGACACCAATCAAATGTCAT
TACTCTAAAAATATTCGTATTCAAACAAACTCGTTAAACTCGAAAAAATA
GTACAGGCAAGTTGTTGTTTATTTCCAACCTCGTTGTAAACGCACCATTT
TCGGTTCTCGACGTAAACCGACGTGCGTCCGTCAATTGTGTAATAAAGCT
TGTTATACACGCAGACGAGGCTACATTTTTCCAATTCAGCTCAGGAATTT
CTATCCAGTTGAGGAGAGGTCAAAGTCTAATATCCTTGACAAACATCCAT
AGAGCCTGATNTTCCAGTTGAGGAGAGGTCAATGTCTAATATCCTTGACA
ACTGAAACATCCATAGAGCCTGATCATCAAACAGCTTCAGATTGCTTTTT
GATATCCTCATCAGAGATTACCTGAGTTCTATTCTCACATTCTACATCTC
CTTCAGTGCACATTTCCTCGCCAACATAAATACCATTTAAAGCTAGGATA
CCATCTTTATTGACACTATTGTCTTGAAGAGCATTCTCCGAAGAAACAGT
CGTTAATGTGGTCGTAGACAAGAAACTCGGCAGCGTCATCGAGGAAGTTG
TGCGATCGCGCAATGATATGACCGAGATCGCACGATCACGTTGAAATTGT
GTGGATGAGAGTTCGATTGAGGTAATACTTGTTGTTGATATACCACGATC
AATAGAATGGGCGGATTTCATACTTCTGGGCGGAGTGGTGCTTTCACGCC
TTATCTTGTACGCTACACGTGCGTCTTTGGactag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015221XLOC_015221Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027080-exon-sc0000606-1491911889:143047..143664TCONS_00027080-exon-sc0000606-1491911889:143047..143664Clytia hemisphaericaexon
TCONS_00027080-exon-sc0000606-1510915933:143047..143664TCONS_00027080-exon-sc0000606-1510915933:143047..143664Clytia hemisphaericaexon
TCONS_00027080-exon-sc0000606-1575043694:143047..143664TCONS_00027080-exon-sc0000606-1575043694:143047..143664Clytia hemisphaericaexon
TCONS_00027080-exon-sc0000606-1491911889:143724..144181TCONS_00027080-exon-sc0000606-1491911889:143724..144181Clytia hemisphaericaexon
TCONS_00027080-exon-sc0000606-1510915933:143724..144181TCONS_00027080-exon-sc0000606-1510915933:143724..144181Clytia hemisphaericaexon
TCONS_00027080-exon-sc0000606-1575043694:143724..144181TCONS_00027080-exon-sc0000606-1575043694:143724..144181Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000606supercontigsc0000606:143047..144181 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.000107715	0	0	0.228748	0.332872	0	0.289359	0.806678	0.312046	0.873359	0.349565	0	0	1.93322e-05	0	0.000253349	0	0	0	0	0	7.76767e-05	0.337738	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027080 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top