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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027083 ID=TCONS_00027083|Name=TCONS_00027083|organism=Clytia hemisphaerica|type=transcript|length=2827bp caaaaacgtctaaaaataccaaatttgataccccttttttacgtgttttt tacactttccgaaaagttaattttgactttaaaagctcataagtggagaa caaattggtcaaatttaaaaagtgataactcaaattttaagttagcatat ctactttctaaatatctaaactccaagcactttgggacatttgttcggcc tcaagacgtcgagaaacgtctgaactttttcgtgggtcacccggtattta AGAATTATCTCTGTGTCTTTCATTAGAGATTTtataaagcaaaacaaaat aaaatgacTTTAACAAGAGTTTTTGTAGTTACTGGAGCAAACAAAGGTAT TGGAAAATCCATTGTTAAATTGCTACTAcaagataaagaagaaaaaattg tcTATCTTACTGCAAGAAGTGAAGAACTTGGACAAAAAGCTGTAAAAGAG CTTGAACAAAATGGtttgaaaccaaaatttcatcaatTGGACCTCACTGA TCAACACAGTATTGAAAGCTTGCGTGATTATTTGCAAAAGGAGCATGCTG GACTTGATGTTCTGGTCAATAATGCTGGAATGGCATACAAAGGATCAAGT ACAGTTCCTTTTGCTGAACAAGCAGAAGTGACAAATAACTGTAATTTCTT TGGAACATTGAATGTCTGTGATGCATTGTTCCCACTTCTACGCAAGAATG CCAGAGTTGTTCATGTCAGCAGTATGGCCAGTGAATATGCCTacaaaaag ctctctcctgaaATGAAGCAGAAATTTACTGATGAAAACCTATCCATCGA GGGATTAAAGGAGCTGATCAATACCTTTGTTCAATCTGCCAAGGATAACC AAGCTACTGAAAGAGGTTTCCCTCAAAGTGCTTATGGTATGTCAAAACTC GGTGAAACAGTAATGACAATGATCCAACAAAAACACTTTGATGCTACACA GCCTGAAAAGAACATCCTGATCAATTCTTGTTGTCCTGGCCTGGTTGATA CTGATATGACAGGTGGAAAATATCCAAATCCATTACCAGTTGACGAAGGG GCTGACACACCAACATTCCTTGCTCTTATACCAGTTGACGCCAAAGAACC AAGAGGGAAATTCTGTAAATTGCGTAAGGTTTGCCCATTTCCACCTTCAA GCTGACTGAATAAATTGTAACCGTGggagttttttttcagaattcaattt tttataacTTTGTAAACTCAAAGACAGCACCAATTCATTTCAAAATGGGA GTTTTTTGCCTTTGTACGTTGTAATTACGCATAAAGGTCATGATTTGAAG TTAAGGATTATATCAGATAATATCGAAGCATTAGATCCtgatattcttga acttttttcattcacataATACTTTAACGTAGAATTCacaatattttgta ttttttgtaggggcttttttgttttatgtCTACATATCTTATAATATTGT ATTagttcgttttcaaaatatttttctctaccTTTAAAATAGGCATGAAC CACCACAATTTGTAAATTTCTCACTTCTCgctgttttgaaaaattcagaa gacttttatttcattctttatgattcttttttgtttcaggaaattaaaga aaaactaTTATCATGTCATCTTCACCGAGGGTTTTTGTAGTAACTGGTGC GAATAAAGGTATCGGAAAATCAATAGTCAAACGATTATTACaagataaag aagaaaagaCTGTCTATCTCACTGCAAGAAATGAAGAGCTTGGATTACAA ACAGTCAAAGAATTTGAACAAAATGGTTTGAAACCAAGATTTCATCAACT GGATATTACCGATCAAAACAGTATTGGTAGATTACATGATTATTTGAAAA GTGAGCATGGTGGACTTAATGTATTGGTTAATAATGCTGGTGTCGCCTTT AGAGGAGATTCCCCTTTACATGGTGCAAAGACCACTGTCGGCTGTAATTA TTTTGGATTGATGAatatttttaattcgttttttccCTTGTTGAAACAGA ACGGAGTTGTTGTTAATATTTCCAGTGTTTCGAGTGTCCATGCGTACAAA CGGTTGTCGGATGGTTTGAAACGAAGGTTCAGTGATTCTGGGTTGACTGT AGATGcACTGAGCATTCTCATGAACGAGTTTATTACCGCAACTGAAGACC AGGACACTTTCGAAGCCACTGGATGGCCAACAAGTGCATATGGAGTTTCC AAAATGGGTGTCTCTTTTCTTACACAACTTCAACAAAAAAGCTTTGATGC TGAAGAACCAAATCGAAATATAAAAGTTAACTCGTGTTGTCCAGGTCTTG TGGAGACGGACATGACTCGAGGAAAACATGAAAAGAGCTGGTACCAGACT CCAGAAGAGGGAGCTGACACTCCAGTCTATTTATCACTGTTACAGGCTAA TGATGATTCGATCAAAGGATGTTTTTGTCAGAAACGAAAACCGACTACAT ACCCACCACAAGAAACAGCAAACAGTtgaatgtgatttttttatcaagTT TGACCAAGTTTCCATATGTTGATCATAATAAAACTTTCAACAAATATTAT TGACTGATTTTCAAGCAATGGAAATACATAAATCTTGAACTTCTTTATcc gatttttcttttattttttaactgtTTCATGTAACCAAAAATCAAGGAAC ctaaattaatttaatttttttaattaattgcatttaaaaaattgatatga cttttgttgaaattttattcaacattttttatacaaactgcataataatt ttaatttattgctTGAATCTTGTCGGAATTTTAAATGTCTGTCATGAAAT ATATTGAACATTAACTGGGTATTAAAT Run BLAST on NCBI transcript from alignment at sc0000606:179200..185344+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027083 ID=TCONS_00027083|Name=TCONS_00027083|organism=Clytia hemisphaerica|type=transcript|length=6145bp|location=Sequence derived from alignment at sc0000606:179200..185344+ (Clytia hemisphaerica) caaaaacgtctaaaaataccaaatttgataccccttttttacgtgttttt
tacactttccgaaaagttaattttgactttaaaagctcataagtggagaa
caaattggtcaaatttaaaaagtgataactcaaattttaagttagcatat
ctactttctaaatatctaaactccaagcactttgggacatttgttcggcc
tcaagacgtcgagaaacgtctgaactttttcgtgggtcacccggtattta
AGAATTATCTCTGTGTCTTTCATTAGAGATTTtataaagcaaaacaaaat
aaaatgacTTTAACAAGAGTTTTTGTAGTTACTGGAGCAAACAAAGGTAT
TGGAAAATCCATTGTTAAATTGCTACTAcaagataaagaagaaaaaattg
tcTATCTTACTGCAAGAAGTGAAGAACTTGGACAAAAAGCTGTAAAAGAG
CTTGAACAAAATGGtttgaaaccaaaatttcatcaatTGGACCTCACTGA
TCAACACAGTATTGAAAGCTTGCGTGATTATTTGCAAAAGGAGCATGCTG
GACTTGATGTTCTGGTCAATAATGCTGGAATGGCATACAAAGGATCAAGT
ACAGTTCCTTTTGCTGAACAAGCAGAAGTGACAAATAACTGTAATTTCTT
TGGAACATTGAATGTCTGTGATGCATTGTTCCCACTTCTACGCAAGAATG
CCAGAGTTGTTCATGTCAGCAGTATGGCCAGTGAATATGCCTacaaaaag
ctctctcctgaaATGAAGCAGAAATTTACTGATGAAAACCTATCCATCGA
GGGTAAGATAGTCAAAAACAATGCTTGTTTTGAAAGAGGActtcttatta
tttataatCAAACACATCAAATGTTTTAGTTTTGGCTTTACAGCTCTAGT
TATAAAAATCTGTcctaaatttattttattctttttttatagcaatatat
ttcgcaggtctattgacctctatttTTAAATAGCCGCAATAAaagatttt
tagctttttacAGTGTTCTATTACACTTTCAAAATACTTGAAAAACTCAA
TTAACAATTACCCAAACTATTTTNTCTATTACACTTGAAAAACTCAATAT
TGATCCTGAATAAGATTGGTTGTCCTAttaatataccgggtgcgccacaa
aaaagattctctctttgaaactaattttctcgaaatctaaaaatttcaaa
agaaccaatcctattttattagaaagaagaaagataaatttaaattttga
tgggtcatttattaaattcgtttcattagatcaaaagttatgctcaattg
aataaaaaagttactttcagaaagtgctcgaaaacgtttaaaaatcgacc
tatcaaattttaattttggcctACATGATGAGGATCATTTTTCAGTAATC
Aaatacataaattttgaaactcaagggtcaaaagggtttaaatttttcat
caaaatcaatttaatttacttttactgACATTTTCCTCAGCTTTTTGGTT
TTAGACTGGATTAAGtttatgtaaggctggatgtacctcgCAATCCATAT
TTTCtaaatgtatttttatgaatttcaccaaattttttggctattttgga
caaatttcctcattttattgaaattcaaccatcttttatataacaaaagg
tcattgaGACaggtaattatcatttttaataactgaaatgaaaatattga
tgtatcatgtaattatgcttttTATGCTTCTTCGAttggtcgatttttaa
cgtttttgagcactttcagaaagtaacttttttattcaattgaccATAAC
CTTTGATCTAATGGAgcgaatttgataaatgacccctgaaaatttaagtt
tttcttcattctttccaatggaataggaatggttcttttagtttttttag
atatcaagaaaattagttttaaagagagaaacctttttgtggcgcacccg
gtattttaATTGATACTATTAATTTAGTAAGCAACCTTTAATAAAGtaca
aaaaattgttaaaaacttcTTTTGATAACTAGATATTATCTTTGATTATT
AACTTTAGGATTAAAGGAGCTGATCAATACCTTTGTTCAATCTGCCAAGG
ATAACCAAGCTACTGAAAGAGGTTTCCCTCAAAGTGCTTATGGTATGTCA
AAACTCGGTGAAACAGTAATGACAATGATCCAACAAAAACACTTTGATGC
TACACAGCCTGAAAAGAACATCCTGATCAATTCTTGTTGTCCTGGCCTGG
TTGATACTGATATGACAGGTGGAAAATATCCAAATCCATTACCAGTTGAC
GAAGGGGCTGACACACCAACATTCCTTGCTCTTATACCAGTTGACGCCAA
AGAACCAAGAGGGAAATTCTGTAAATTGCGTAAGGTTTGCCCATTTCCAC
CTTCAAGCTGACTGAATAAATTGTAACCGTGggagttttttttcagaatt
caattttttataacTTTGTAAACTCAAAGACAGCACCAATTCATTTCAAA
ATGGGAGTTTTTTGCCTTTGTACGTTGTAATTACGCATAAAGGTCATGAT
TTGAAGTTAAGGATTATATCAGATAATATCGAAGCATTAGATCCtgatat
tcttgaacttttttcattcacataATACTTTAACGTAGAATTCacaatat
tttgtattttttgtaggggcttttttgttttatgtCTACATATCTTATAA
TATTGTATTagttcgttttcaaaatatttttctctaccTTTAAAATAGGC
ATGAACCACCACAATTTGTAAATTTCTCACTTCTCgctgttttgaaaaat
tcagaagacttttatttcattctttatgattcttttttgtttcaggaaat
taaagaaaaactaTTATCATGTCATCTTCACCGAGGGTTTTTGTAGTAAC
TGGTGCGAATAAAGGTATTGGAAAATCAatagtaaaactatttttgcaag
ataaagaagaaaagattGTCTATCTCACTGCAAGAAATGAAGAGCTTGGA
TTACAAACAGTCAAAGAATTTGAACAAAATGGTTTGAAACCAAGGTTTCG
TCAACTAGATATTACGGATCAAAACAGTATTGATAGATTACGTGATCATT
TGCAAAAGGAGCATCATGGCATTGATGTATTGGTTAATAATGCTGGAATA
GCATATTCTAATGCAAGTACTATACCATTTGGTGAGCAAGCAGACACAAC
AACTAAATGCAATTTCTTTGGAACTTTAAGTGTATGTGAGGCACTGTTCC
CACTTTTGCGTAGAAATGCTAGAGTGGTTCATGTATCAAGTGGGGCTGGT
ACCAGGGGTTATGAGGCCTTGTCAGCGGAGATGAAAGGAAAGTTTAGTGA
CCCTAACCTCCCTATTCAaggtaaattatttttatgataATGATATGTCA
TTTTTCTTTCTCTGAAGTCATAGTATTTGATGATATTGCATGCAGAAATG
TTTATCGCTTATTGGGTTTCATTCTTGTTAAATTCTTCCAAATGATGGAC
TTTCATGCCAGTGTTTTTGTgttcaaaatttattattttatgcTGCACCC
CATCTCTGATATGCATTAATTTCTTTTAGATCTGAAAGATTTGATCAATG
TATTTGTGCAAGCTGCCAGAGACAATCAAGTCACTGAGAAAGGTTTCAAA
CAGAATGCATATGGTATTTCCAAACTCGGTCAAATAGTATTGGCTAGCAT
TCAACAAAGACAATTTGACAGTAACAAACCCGAGCAAAATATTCTTGTTA
ATTCTTGTACACCAGGGTTTGTAGATACTGACATGACTCAACATATGATT
gctaataataaaaaaacagttGACGAGGGAGCAGATACCCCTGTATATCT
TGCTCTTCTTTCTCCTGATGTAAAAGAACCTAGAGGAAAATTTTTGAGGT
CAAGAGAAGTTGAGGCATTTCCACCAACCAATTGAatgaaaatgttcttt
atgaaatGTCAACAAATAGATGCATCTTTTAGCAGACCATTTCATACCAT
TTCAtaactaccttattacacgaatattacatttacaaattgaaaaattt
cgtgttaataaaaacccccttgcttaattaaaaccagccattGTTTCCTT
GAAAAACCAGAAAAATTCGTCTTAATTTCAGATCGTGCAattttcaaggc
cgttgaatactacCTGCCTAATTTTTCAATTATGCAATCTTTTCTAGAGA
TTTTGGTACGAATCAAAATAGGGTCGCATTTTACTGGAGTTTTAGAGTCA
TCATGAGATTTTATATTGTTAGGAATTACCGATCCTTGTTTTCTGAAAAA
AGCTTCCATTTCTTGTTATTATCTAAAAGTTTTTTAGATATTCCTAAAGT
CATcaacattttccaaatttttgtgttTCAGGCAGATTAAGTTATCATAA
GCTATAAAAGTATATTCAAATAACTATCATGGATTCCAAACCTAGAGTTT
TTGTTGTAACTGGATCAAACAAAGGTATCGGAAAATCAATAGTCAAACGA
TTATTACaagataaagaagaaaagaCTGTCTATCTCACTGCAAGAAATGA
AGAGCTTGGATTACAAACAGTCAAAGAATTTGAACAAAATGGTTTGAAAC
CAAGATTTCATCAACTGGATATTACCGATCAAAACAGTATTGGTAGATTA
CATGATTATTTGAAAAGTGAGCATGGTGGACTTAATGTATTGGTTAATAA
TGCTGGTGTCGCCTTTAGAGGAGATTCCCCTTTACATGGTGCAAAGACCA
CTGTCGGCTGTAATTATTTTGGATTGATGAatatttttaattcgtttttt
ccCTTGTTGAAACAGAACGGAGTTGTTGTTAATATTTCCAGTGTTTCGAG
TGTCCATGCGTACAAACGGTTGTCGGATGGTTTGAAACGAAGGTTCAGTG
ATTCTGGGTTGACTGTAGATGGTATGAACATTTTTCAAtcgttatttttt
aattaatatCATTGCAATGGCTAATTTGAAAAGGCTCTTCACATGTTTTA
GTTCTTTTGTCGACACAACAAAGGAAAGGGGAAAAAAATTGCCGAAAATG
GAAGGATTTTGTCTCTTTGAAATCTCAAATTCGTCCATCTAtttaaaggg
attatcagatgatttttgatatttggcctAGAGATACCTTTCATGGTCCA
GAGAGACACCTCTAAATCTTTTGACCCAATTTCTTTTCAAAGCTGAGATG
TTTGactttgaaatctctaaaaatgagtctttacacagtctttacgttaa
atttctattgttttcaagtaaaaatttgaaaattcaaagtcgaatatctc
agctttggaaaataattgagaGAGGTGTCTCTCCTGACCATAAAAGGTAT
CTCTGAGtaagccaaatatcaaaaatcatctgaAACTATCATCCTATACA
TTTCCtatgatttttcttttcagcACTGAGCATTCTCATGAACGAGTTTA
TTACCGCAACTGAAGACCAGGACACTTTCGAAGCCACTGGATGGCCAACA
AGTGCATATGGAGTTTCCAAAATGGGTGTCTCTTTTCTTACACAACTTCA
ACAAAAAAGCTTTGATGCTGAAGAACCAAATCGAAATATAAAAGTTAACT
CGTGTTGTCCAGGTCTTGTGGAGACGGACATGACTCGAGGAAAACATGAA
AAGAGCTGGTACCAGACTCCAGAAGAGGGAGCTGACACTCCAGTCTATTT
ATCACTGTTACAGGCTAATGATGATTCGATCAAAGGATGTTTTTGTCAGA
AACGAAAACCGACTACATACCCACCACAAGAAACAGCAAACAGTtgaatg
tgatttttttatcaagTTTGACCAAGTTTCCATATGTTGATCATAATAAA
ACTTTCAACAAATATTATTGACTGATTTTCAAGCAATGGAAATACATAAA
TCTTGAACTTCTTTATccgatttttcttttattttttaactgtTTCATGT
AACCAAAAATCAAGGAACctaaattaatttaatttttttaattaattgca
tttaaaaaattgatatgacttttgttgaaattttattcaacattttttat
acaaactgcataataattttaatttattgctTGAATCTTGTCGGAATTTT
AAATGTCTGTCATGAAATATATTGAACATTAACTGGGTATTAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00027083-exon-sc0000606-1491911889:179200..180001 | TCONS_00027083-exon-sc0000606-1491911889:179200..180001 | Clytia hemisphaerica | exon |
TCONS_00027083-exon-sc0000606-1510915933:179200..180001 | TCONS_00027083-exon-sc0000606-1510915933:179200..180001 | Clytia hemisphaerica | exon |
TCONS_00027083-exon-sc0000606-1575043694:179200..180001 | TCONS_00027083-exon-sc0000606-1575043694:179200..180001 | Clytia hemisphaerica | exon |
TCONS_00027083-exon-sc0000606-1491911889:181258..182113 | TCONS_00027083-exon-sc0000606-1491911889:181258..182113 | Clytia hemisphaerica | exon |
TCONS_00027083-exon-sc0000606-1510915933:181258..182113 | TCONS_00027083-exon-sc0000606-1510915933:181258..182113 | Clytia hemisphaerica | exon |
TCONS_00027083-exon-sc0000606-1575043694:181258..182113 | TCONS_00027083-exon-sc0000606-1575043694:181258..182113 | Clytia hemisphaerica | exon |
TCONS_00027083-exon-sc0000606-1491911889:183674..184120 | TCONS_00027083-exon-sc0000606-1491911889:183674..184120 | Clytia hemisphaerica | exon |
TCONS_00027083-exon-sc0000606-1510915933:183674..184120 | TCONS_00027083-exon-sc0000606-1510915933:183674..184120 | Clytia hemisphaerica | exon |
TCONS_00027083-exon-sc0000606-1575043694:183674..184120 | TCONS_00027083-exon-sc0000606-1575043694:183674..184120 | Clytia hemisphaerica | exon |
TCONS_00027083-exon-sc0000606-1491911889:184623..185344 | TCONS_00027083-exon-sc0000606-1491911889:184623..185344 | Clytia hemisphaerica | exon |
TCONS_00027083-exon-sc0000606-1510915933:184623..185344 | TCONS_00027083-exon-sc0000606-1510915933:184623..185344 | Clytia hemisphaerica | exon |
TCONS_00027083-exon-sc0000606-1575043694:184623..185344 | TCONS_00027083-exon-sc0000606-1575043694:184623..185344 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000606 | supercontig | sc0000606:179200..185344 + |
Blast
BLAST of TCONS_00027083 vs. Swiss-Prot (Human)
Match: CBR1 (Carbonyl reductase [NADPH] 1 OS=Homo sapiens GN=CBR1 PE=1 SV=3) HSP 1 Score: 251.521 bits (641), Expect = 1.231e-75 Identity = 130/271 (47.97%), Postives = 177/271 (65.31%), Query Frame = 1
Query: 319 VFVVTGANKGIGKSIVKLLLQDKEEKIVYLTARSEELGQKAVKELEQNGLKPKFHQLDLTDQHSIESLRDYLQKEHAGLDVLVNNAGMAYKGSSTVPFAEQAEVTNNCNFFGTLNVCDALFPLLRKNARVVHVSSMASEYAYKKLSPEMKQKFTDENLSIEGLKELINTFVQSAKDNQATERGFPQSAYGMSKLGETVMTMIQQKHFDATQPEKNILINSCCPGLVDTDMTGGKYPNPLPVDEGADTPTFLALIPVDAKEPRGKFCKLRKV 1131
V +VTG NKGIG +IV+ L + +V LTAR GQ AV++L+ GL P+FHQLD+ D SI +LRD+L+KE+ GLDVLVNNAG+A+K + PF QAEVT NFFGT +VC L PL++ RVV+VSS+ S A K SPE++QKF E ++ E L L+N FV+ K + G+P SAYG++K+G TV++ I + + IL+N+CCPG V TDM G K +EGA+TP +LAL+P DA+ P G+F ++V
Sbjct: 7 VALVTGGNKGIGLAIVRDLCRLFSGDVV-LTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIMSVRALKSCSPELQQKFRSETITEEELVGLMNKFVEDTKKGVHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRTDMAGPKATK--SPEEGAETPVYLALLPPDAEGPHGQFVSEKRV 274 HSP 2 Score: 202.216 bits (513), Expect = 4.443e-58 Identity = 120/279 (43.01%), Postives = 171/279 (61.29%), Query Frame = 2
Query: 1613 MSSSPRVFVVTGANKGIGKSIVKRLLQDKEEKTVYLTARNEELGLQTVKEFEQNGLKPRFHQLDITDQNSIGRLHDYLKSEHGGLNVLVNNAGVAFR--GDSPLH-GAKTTVGCNYFGLMNIFNSFFPLLKQNGXXXXXXXXXXXHAYKRLSDGLKRRFSDSGLTVDALSILMNEFITATEDQDTFEATGWPTSAYGVSKMGVSFLTQLQQKSFDAEEPNRNIKVNSCCPGLVETDMTRGKHEKSWYQTPEEGADTPVYLSLLQANDDSIKGCFCQKRK 2440
MSS V +VTG NKGIG +IV+ L + V LTAR+ G V++ + GL PRFHQLDI D SI L D+L+ E+GGL+VLVNNAG+AF+ +P H A+ T+ N+FG ++ PL+K G VVN+SS+ SV A K S L+++F +T + L LMN+F+ T+ + + GWP+SAYGV+K+GV+ L+++ + + I +N+CCPG V TDM K KS PEEGA+TPVYL+LL + + G F +++
Sbjct: 1 MSSGIHVALVTGGNKGIGLAIVRDLCR-LFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIMSVRALKSCSPELQQKFRSETITEEELVGLMNKFVEDTK-KGVHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRTDMAGPKATKS----PEEGAETPVYLALLPPDAEGPHGQFVSEKR 273
The following BLAST results are available for this feature:
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