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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027085 ID=TCONS_00027085|Name=TCONS_00027085|organism=Clytia hemisphaerica|type=transcript|length=2184bp
attggtcaaatttaaaaagtgataactcaaattttaagttagcatatcta
ctttctaaatatctaaactccaagcactttgggacatttgttcggcctca
agacgtcgagaaacgtctgaactttttcgtgggtcacccggtatttaAGA
ATTATCTCTGTGTCTTTCATTAGAGATTTtataaagcaaaacaaaataaa
atgacTTTAACAAGAGTTTTTGTAGTTACTGGAGCAAACAAAGGTATTGG
AAAATCCATTGTTAAATTGCTACTAcaagataaagaagaaaaaattgtcT
ATCTTACTGCAAGAAGTGAAGAACTTGGACAAAAAGCTGTAAAAGAGCTT
GAACAAAATGGtttgaaaccaaaatttcatcaatTGGACCTCACTGATCA
ACACAGTATTGAAAGCTTGCGTGATTATTTGCAAAAGGAGCATGCTGGAC
TTGATGTTCTGGTCAATAATGCTGGAATGGCATACAAAGGATCAAGTACA
GTTCCTTTTGCTGAACAAGCAGAAGTGACAAATAACTGTAATTTCTTTGG
AACATTGAATGTCTGTGATGCATTGTTCCCACTTCTACGCAAGAATGCCA
GAGTTGTTCATGTCAGCAGTATGGCCAGTGAATATGCCTacaaaaagctc
tctcctgaaATGAAGCAGAAATTTACTGATGAAAACCTATCCATCGAGGG
ATTAAAGGAGCTGATCAATACCTTTGTTCAATCTGCCAAGGATAACCAAG
CTACTGAAAGAGGTTTCCCTCAAAGTGCTTATGGTATGTCAAAACTCGGT
GAAACAGTAATGACAATGATCCAACAAAAACACTTTGATGCTACACAGCC
TGAAAAGAACATCCTGATCAATTCTTGTTGTCCTGGCCTGGTTGATACTG
ATATGACAGGTGGAAAATATCCAAATCCATTACCAGTTGACGAAGGGGCT
GACACACCAACATTCCTTGCTCTTATACCAGTTGACGCCAAAGAACCAAG
AGGGAAATTCTGTAAATTGCgaaattaaagaaaaactaTTATCATGTCAT
CTTCACCGAGGGTTTTTGTAGTAACTGGTGCGAATAAAGGTATTGGAAAA
TCAatagtaaaactatttttgcaagataaagaagaaaagattGTCTATCT
CACTGCAAGAAATGAAGAGCTTGGATTACAAACAGTCAAAGAATTTGAAC
AAAATGGTTTGAAACCAAGGTTTCGTCAACTAGATATTACGGATCAAAAC
AGTATTGATAGATTACGTGATCATTTGCAAAAGGAGCATCATGGCATTGA
TGTATTGGTTAATAATGCTGGAATAGCATATTCTAATGCAAGTACTATAC
CATTTGGTGAGCAAGCAGACACAACAACTAAATGCAATTTCTTTGGAACT
TTAAGTGTATGTGAGGCACTGTTCCCACTTTTGCGTAGAAATGCTAGAGT
GGTTCATGTATCAAGTGGGGCTGGTACCAGGGGTTATGAGGCCTTGTCAG
CGGAGATGAAAGGAAAGTTTAGTGACCCTAACCTCCCTATTCAagATCTG
AAAGATTTGATCAATGTATTTGTGCAAGCTGCCAGAGACAATCAAGTCAC
TGAGAAAGGTTTCAAACAGAATGCATATGGTATTTCCAAACTCGGTCAAA
TAGTATTGGCTAGCATTCAACAAAGACAATTTGACAGTAACAAACCCGAG
CAAAATATTCTTGTTAATTCTTGTACACCAGGGTTTGTAGATACTGACAT
GACTCAACATATGATTgctaataataaaaaaacagttGACGAGGGAGCAG
ATACCCCTGTATATCTTGCTCTTCTTTCTCCTGATGTAAAAGAACCTAGA
GGAAAATTTTTGAGGTCAAGAGAAGTTGAGGCATTTCCACCAACCAATTG
AatgaaaatgttctttatgaaatGTCAACAAATAGATGCATCTTTTAGCA
GACCATTTCATACCATTTCAtaactaccttattacacgaatattacattt
acaaattgaaaaatttcgtgttaataaaaacccccttgcttaattaaaac
cagccattGTTTCCTTGAAAAACCAGAAAAATTCGTCTTAATTTCAGATC
GTGCAattttcaaggccgttgaatactacCTGCCTAATTTTTCAATTATG
CAATCTTTTCTAGAGATTTTGGTACGAATCAAAA Run BLAST on NCBI transcript from alignment at sc0000606:179303..183417+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027085 ID=TCONS_00027085|Name=TCONS_00027085|organism=Clytia hemisphaerica|type=transcript|length=4115bp|location=Sequence derived from alignment at sc0000606:179303..183417+ (Clytia hemisphaerica)
attggtcaaatttaaaaagtgataactcaaattttaagttagcatatcta
ctttctaaatatctaaactccaagcactttgggacatttgttcggcctca
agacgtcgagaaacgtctgaactttttcgtgggtcacccggtatttaAGA
ATTATCTCTGTGTCTTTCATTAGAGATTTtataaagcaaaacaaaataaa
atgacTTTAACAAGAGTTTTTGTAGTTACTGGAGCAAACAAAGGTATTGG
AAAATCCATTGTTAAATTGCTACTAcaagataaagaagaaaaaattgtcT
ATCTTACTGCAAGAAGTGAAGAACTTGGACAAAAAGCTGTAAAAGAGCTT
GAACAAAATGGtttgaaaccaaaatttcatcaatTGGACCTCACTGATCA
ACACAGTATTGAAAGCTTGCGTGATTATTTGCAAAAGGAGCATGCTGGAC
TTGATGTTCTGGTCAATAATGCTGGAATGGCATACAAAGGATCAAGTACA
GTTCCTTTTGCTGAACAAGCAGAAGTGACAAATAACTGTAATTTCTTTGG
AACATTGAATGTCTGTGATGCATTGTTCCCACTTCTACGCAAGAATGCCA
GAGTTGTTCATGTCAGCAGTATGGCCAGTGAATATGCCTacaaaaagctc
tctcctgaaATGAAGCAGAAATTTACTGATGAAAACCTATCCATCGAGGG
TAAGATAGTCAAAAACAATGCTTGTTTTGAAAGAGGActtcttattattt
ataatCAAACACATCAAATGTTTTAGTTTTGGCTTTACAGCTCTAGTTAT
AAAAATCTGTcctaaatttattttattctttttttatagcaatatatttc
gcaggtctattgacctctatttTTAAATAGCCGCAATAAaagatttttag
ctttttacAGTGTTCTATTACACTTTCAAAATACTTGAAAAACTCAATTA
ACAATTACCCAAACTATTTTNTCTATTACACTTGAAAAACTCAATATTGA
TCCTGAATAAGATTGGTTGTCCTAttaatataccgggtgcgccacaaaaa
agattctctctttgaaactaattttctcgaaatctaaaaatttcaaaaga
accaatcctattttattagaaagaagaaagataaatttaaattttgatgg
gtcatttattaaattcgtttcattagatcaaaagttatgctcaattgaat
aaaaaagttactttcagaaagtgctcgaaaacgtttaaaaatcgacctat
caaattttaattttggcctACATGATGAGGATCATTTTTCAGTAATCAaa
tacataaattttgaaactcaagggtcaaaagggtttaaatttttcatcaa
aatcaatttaatttacttttactgACATTTTCCTCAGCTTTTTGGTTTTA
GACTGGATTAAGtttatgtaaggctggatgtacctcgCAATCCATATTTT
Ctaaatgtatttttatgaatttcaccaaattttttggctattttggacaa
atttcctcattttattgaaattcaaccatcttttatataacaaaaggtca
ttgaGACaggtaattatcatttttaataactgaaatgaaaatattgatgt
atcatgtaattatgcttttTATGCTTCTTCGAttggtcgatttttaacgt
ttttgagcactttcagaaagtaacttttttattcaattgaccATAACCTT
TGATCTAATGGAgcgaatttgataaatgacccctgaaaatttaagttttt
cttcattctttccaatggaataggaatggttcttttagtttttttagata
tcaagaaaattagttttaaagagagaaacctttttgtggcgcacccggta
ttttaATTGATACTATTAATTTAGTAAGCAACCTTTAATAAAGtacaaaa
aattgttaaaaacttcTTTTGATAACTAGATATTATCTTTGATTATTAAC
TTTAGGATTAAAGGAGCTGATCAATACCTTTGTTCAATCTGCCAAGGATA
ACCAAGCTACTGAAAGAGGTTTCCCTCAAAGTGCTTATGGTATGTCAAAA
CTCGGTGAAACAGTAATGACAATGATCCAACAAAAACACTTTGATGCTAC
ACAGCCTGAAAAGAACATCCTGATCAATTCTTGTTGTCCTGGCCTGGTTG
ATACTGATATGACAGGTGGAAAATATCCAAATCCATTACCAGTTGACGAA
GGGGCTGACACACCAACATTCCTTGCTCTTATACCAGTTGACGCCAAAGA
ACCAAGAGGGAAATTCTGTAAATTGCGTAAGGTTTGCCCATTTCCACCTT
CAAGCTGACTGAATAAATTGTAACCGTGggagttttttttcagaattcaa
ttttttataacTTTGTAAACTCAAAGACAGCACCAATTCATTTCAAAATG
GGAGTTTTTTGCCTTTGTACGTTGTAATTACGCATAAAGGTCATGATTTG
AAGTTAAGGATTATATCAGATAATATCGAAGCATTAGATCCtgatattct
tgaacttttttcattcacataATACTTTAACGTAGAATTCacaatatttt
gtattttttgtaggggcttttttgttttatgtCTACATATCTTATAATAT
TGTATTagttcgttttcaaaatatttttctctaccTTTAAAATAGGCATG
AACCACCACAATTTGTAAATTTCTCACTTCTCgctgttttgaaaaattca
gaagacttttatttcattctttatgattcttttttgtttcaggaaattaa
agaaaaactaTTATCATGTCATCTTCACCGAGGGTTTTTGTAGTAACTGG
TGCGAATAAAGGTATTGGAAAATCAatagtaaaactatttttgcaagata
aagaagaaaagattGTCTATCTCACTGCAAGAAATGAAGAGCTTGGATTA
CAAACAGTCAAAGAATTTGAACAAAATGGTTTGAAACCAAGGTTTCGTCA
ACTAGATATTACGGATCAAAACAGTATTGATAGATTACGTGATCATTTGC
AAAAGGAGCATCATGGCATTGATGTATTGGTTAATAATGCTGGAATAGCA
TATTCTAATGCAAGTACTATACCATTTGGTGAGCAAGCAGACACAACAAC
TAAATGCAATTTCTTTGGAACTTTAAGTGTATGTGAGGCACTGTTCCCAC
TTTTGCGTAGAAATGCTAGAGTGGTTCATGTATCAAGTGGGGCTGGTACC
AGGGGTTATGAGGCCTTGTCAGCGGAGATGAAAGGAAAGTTTAGTGACCC
TAACCTCCCTATTCAaggtaaattatttttatgataATGATATGTCATTT
TTCTTTCTCTGAAGTCATAGTATTTGATGATATTGCATGCAGAAATGTTT
ATCGCTTATTGGGTTTCATTCTTGTTAAATTCTTCCAAATGATGGACTTT
CATGCCAGTGTTTTTGTgttcaaaatttattattttatgcTGCACCCCAT
CTCTGATATGCATTAATTTCTTTTAGATCTGAAAGATTTGATCAATGTAT
TTGTGCAAGCTGCCAGAGACAATCAAGTCACTGAGAAAGGTTTCAAACAG
AATGCATATGGTATTTCCAAACTCGGTCAAATAGTATTGGCTAGCATTCA
ACAAAGACAATTTGACAGTAACAAACCCGAGCAAAATATTCTTGTTAATT
CTTGTACACCAGGGTTTGTAGATACTGACATGACTCAACATATGATTgct
aataataaaaaaacagttGACGAGGGAGCAGATACCCCTGTATATCTTGC
TCTTCTTTCTCCTGATGTAAAAGAACCTAGAGGAAAATTTTTGAGGTCAA
GAGAAGTTGAGGCATTTCCACCAACCAATTGAatgaaaatgttctttatg
aaatGTCAACAAATAGATGCATCTTTTAGCAGACCATTTCATACCATTTC
Ataactaccttattacacgaatattacatttacaaattgaaaaatttcgt
gttaataaaaacccccttgcttaattaaaaccagccattGTTTCCTTGAA
AAACCAGAAAAATTCGTCTTAATTTCAGATCGTGCAattttcaaggccgt
tgaatactacCTGCCTAATTTTTCAATTATGCAATCTTTTCTAGAGATTT
TGGTACGAATCAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027085-exon-sc0000606-1491911889:179303..180001 | TCONS_00027085-exon-sc0000606-1491911889:179303..180001 | Clytia hemisphaerica | exon |
| TCONS_00027085-exon-sc0000606-1510915933:179303..180001 | TCONS_00027085-exon-sc0000606-1510915933:179303..180001 | Clytia hemisphaerica | exon |
| TCONS_00027085-exon-sc0000606-1575043694:179303..180001 | TCONS_00027085-exon-sc0000606-1575043694:179303..180001 | Clytia hemisphaerica | exon |
| TCONS_00027085-exon-sc0000606-1491911889:181258..181578 | TCONS_00027085-exon-sc0000606-1491911889:181258..181578 | Clytia hemisphaerica | exon |
| TCONS_00027085-exon-sc0000606-1510915933:181258..181578 | TCONS_00027085-exon-sc0000606-1510915933:181258..181578 | Clytia hemisphaerica | exon |
| TCONS_00027085-exon-sc0000606-1575043694:181258..181578 | TCONS_00027085-exon-sc0000606-1575043694:181258..181578 | Clytia hemisphaerica | exon |
| TCONS_00027085-exon-sc0000606-1491911889:182045..182569 | TCONS_00027085-exon-sc0000606-1491911889:182045..182569 | Clytia hemisphaerica | exon |
| TCONS_00027085-exon-sc0000606-1510915933:182045..182569 | TCONS_00027085-exon-sc0000606-1510915933:182045..182569 | Clytia hemisphaerica | exon |
| TCONS_00027085-exon-sc0000606-1575043694:182045..182569 | TCONS_00027085-exon-sc0000606-1575043694:182045..182569 | Clytia hemisphaerica | exon |
| TCONS_00027085-exon-sc0000606-1491911889:182779..183417 | TCONS_00027085-exon-sc0000606-1491911889:182779..183417 | Clytia hemisphaerica | exon |
| TCONS_00027085-exon-sc0000606-1510915933:182779..183417 | TCONS_00027085-exon-sc0000606-1510915933:182779..183417 | Clytia hemisphaerica | exon |
| TCONS_00027085-exon-sc0000606-1575043694:182779..183417 | TCONS_00027085-exon-sc0000606-1575043694:182779..183417 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000606 | supercontig | sc0000606:179303..183417 + |
Blast
BLAST of TCONS_00027085 vs. Swiss-Prot (Human)
Match: CBR1 (Carbonyl reductase [NADPH] 1 OS=Homo sapiens GN=CBR1 PE=1 SV=3) HSP 1 Score: 249.98 bits (637), Expect = 2.846e-76 Identity = 129/265 (48.68%), Postives = 174/265 (65.66%), Query Frame = 3
Query: 216 VFVVTGANKGIGKSIVKLLLQDKEEKIVYLTARSEELGQKAVKELEQNGLKPKFHQLDLTDQHSIESLRDYLQKEHAGLDVLVNNAGMAYKGSSTVPFAEQAEVTNNCNFFGTLNVCDALFPLLRKNARVVHVSSMASEYAYKKLSPEMKQKFTDENLSIEGLKELINTFVQSAKDNQATERGFPQSAYGMSKLGETVMTMIQQKHFDATQPEKNILINSCCPGLVDTDMTGGKYPNPLPVDEGADTPTFLALIPVDAKEPRGKF 1010
V +VTG NKGIG +IV+ L + +V LTAR GQ AV++L+ GL P+FHQLD+ D SI +LRD+L+KE+ GLDVLVNNAG+A+K + PF QAEVT NFFGT +VC L PL++ RVV+VSS+ S A K SPE++QKF E ++ E L L+N FV+ K + G+P SAYG++K+G TV++ I + + IL+N+CCPG V TDM G K +EGA+TP +LAL+P DA+ P G+F
Sbjct: 7 VALVTGGNKGIGLAIVRDLCRLFSGDVV-LTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIMSVRALKSCSPELQQKFRSETITEEELVGLMNKFVEDTKKGVHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRTDMAGPKATK--SPEEGAETPVYLALLPPDAEGPHGQF 268 HSP 2 Score: 227.254 bits (578), Expect = 8.676e-68 Identity = 125/285 (43.86%), Postives = 171/285 (60.00%), Query Frame = 3
Query: 1044 MSSSPRVFVVTGANKGIGKSIVK----LFLQDKEEKIVYLTARNEELGLQTVKEFEQNGLKPRFRQLDITDQNSIDRLRDHLQKEHHGIDVLVNNAGIAYSNASTIPFGEQADTTTKCNFFGTLSVCEALFPLLRRNARVVHVSSGAGTRGYEALSAEMKGKFSDPNLPIQDLKDLINVFVQAARDNQVTEKGFKQNAYGISKLGQIVLASIQQRQFDSNKPEQNILVNSCTPGFVDTDMTQHMIANNKKTVDEGADTPVYLALLSPDVKEPRGKFLRSREVEAF 1886
MSS V +VTG NKGIG +IV+ LF D V LTAR+ G V++ + GL PRF QLDI D SI LRD L+KE+ G+DVLVNNAGIA+ A PF QA+ T K NFFGT VC L PL++ RVV+VSS R ++ S E++ KF + ++L L+N FV+ + ++G+ +AYG++K+G VL+ I R+ + IL+N+C PG+V TDM K+ +EGA+TPVYLALL PD + P G+F+ + VE +
Sbjct: 1 MSSGIHVALVTGGNKGIGLAIVRDLCRLFSGD-----VVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIMSVRALKSCSPELQQKFRSETITEEELVGLMNKFVEDTKKGVHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRTDMAG---PKATKSPEEGAETPVYLALLPPDAEGPHGQFVSEKRVEQW 277
The following BLAST results are available for this feature:
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