|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027087 ID=TCONS_00027087|Name=TCONS_00027087|organism=Clytia hemisphaerica|type=transcript|length=2430bpRun BLAST on NCBI protein sequence of TCONS_00027087-protein >TCONS_00027087-protein ID=TCONS_00027087-protein|Name=TCONS_00027087-protein|organism=Clytia hemisphaerica|type=polypeptide|length=712bp MVKRMYGDSAGEENDEKPSKTLVLDSTAESCNSDTKIKCSVRSFYGNRPSRun BLAST on NCBI transcript from alignment at sc0000606:185518..201534+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00027087 ID=TCONS_00027087|Name=TCONS_00027087|organism=Clytia hemisphaerica|type=transcript|length=16017bp|location=Sequence derived from alignment at sc0000606:185518..201534+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000606:185518..201534+ >TCONS_00027087 ID=TCONS_00027087|Name=TCONS_00027087|organism=Clytia hemisphaerica|type=CDS|length=19251bp|location=Sequence derived from alignment at sc0000606:185518..201534+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00027087 vs. Swiss-Prot (Human)
Match: ESCO1 (N-acetyltransferase ESCO1 OS=Homo sapiens GN=ESCO1 PE=1 SV=3) HSP 1 Score: 228.409 bits (581), Expect = 5.069e-63 Identity = 110/232 (47.41%), Postives = 147/232 (63.36%), Query Frame = 3
Query: 1536 QMYIDVGQKDFGHVKCESCGMVYTKSQEEDEEQHAKYHQKIVQKLRFNGWKAERILEEFPDGRIISIKDSDNFMHLKKLNEIREVVDGELGFASSQEKRSLGQYE--QAFLFI-HSKKVVGCVIAVPITKGFPILTDENTNATEESSPI-----QSWCCSTQPVKAICGISRIWVFSQSRRMKIGTRLVECIRRNFLYGCVIEKNNLAFSDPTPNGRAFAEHYVGKKDVLVF 2207
Q+ ID GQK FG V C CGM+YT S EDE QH +H + + +++ GWK ERIL E+PDGRII + D LKK++EIRE+VD +LGF ++ L Y + LFI + KKVVGC+IA I G+ ++ ++ E + ++WCCST P AICGISRIWVFS RR KI +R++EC+R NF+YG + K +AFSDPTP+G+ FA Y G LV+
Sbjct: 604 QLIIDAGQKRFGAVSCNVCGMLYTASNPEDETQHLLFHNQFISAVKYVGWKKERILAEYPDGRIIMVLPEDPKYALKKVDEIREMVDNDLGF----QQAPLMCYSRTKTLLFISNDKKVVGCLIAEHIQWGYRVIEEKLPVIRSEEEKVRFERQKAWCCSTLPEPAICGISRIWVFSMMRRKKIASRMIECLRSNFIYGSYLSKEEIAFSDPTPDGKLFATQYCGTGQFLVY 831 The following BLAST results are available for this feature:
BLAST of TCONS_00027087 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2025, MARIMBA.