TCONS_00027089 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027089
Unique NameTCONS_00027089
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length174

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027089 ID=TCONS_00027089|Name=TCONS_00027089|organism=Clytia hemisphaerica|type=transcript|length=174bp
CCCTTAACAAGAtcagttgaacccgactggaaGGGATGCACGTGCATATA
GTTGGACATGTCCCCGATAGTTTACCAACACAATTACcaccaaaaaaatt
aatcacACTAAACAAAACAACCAAGGAGAATGTTATTCACGTAATCACAG
CAATGTAAAAACTTGTTTACTTCA
Run BLAST on NCBI

transcript from alignment at sc0000606:203966..208773+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027089 ID=TCONS_00027089|Name=TCONS_00027089|organism=Clytia hemisphaerica|type=transcript|length=4808bp|location=Sequence derived from alignment at sc0000606:203966..208773+ (Clytia hemisphaerica)
CCCTTAACAAGAtcagttgaacccgactggaaGGTacgtttctttctgtt
taaaaatttcttcttttagaatGAAAATTACTAGTCAAAGCAGCTATCTG
TAAATCTTTGATTGTCTGTAAGGGGCCATAGTGTGCAATGGGGGATTGGT
TATCAAGGTCCCACCTAAAAATTCAGGTCCACTCTCGAGAAATTCCCACC
TGAATGTTGAATTTCTAACGACATTCTGGTCTGCCGCCGACGCACACCTG
ACAGTCGGGTGCTGCTGTCGGTGTTTTGTGGGGTGCtagaatttataaat
ttttaaaaacacccGACATCNGCCACCTGAATGTTGAATTTCCAACGACA
TTCTGGTCTGCCCGACGcacacccgacagtcgggtgctgctGTCGGTGTT
TTGTGGGGTGCtagaatttctaaattttcaaaaacacccgACATCGCTCC
ATAGGCGTTTGACAGAAACTTTTGCTGTTTTCCATCCACCTGCTATACTT
TTATACAGTGTAGTTTGCCCGTGTTGTCCACGTCGCTGTCCatttccaga
cgatctcaatcgaatggcatcgacgatcgaaccagtcgaaccaaatggaa
cgcaatcgaccgattgaaattcgattgtcgaacgcaatcaaatctcaatc
gaacgtcaaaattctggataatattcgattggttcgattgttgttcgact
ggttcgattgttgttgttgattgtCGTTGTTGTTGGGAAACGTTGCCCGg
ttcagaagcgtattgttgatcggaccatactgctttctaaccgtcaaaac
aaagatggctgCATAAAATAGACAATCAACTctagacgatctcaatcgaa
cgcaatcgaacgcaattgaacatcaatcgaacgcacaATCCAATATCAAT
ccaatctgaaaattgcggtaatattcgattgagattcgattgcgttcgac
aatcgaatttcaatcggtcgattgcgttccatttggttcgactggttcta
tcgtcgattccgttcgattgagattgtctggtggATTTGTTGGGTGCTAT
TAAAGCGTCCAATATTAACCACCCGACAATGAACACCCAACTGTTGGGTG
TAAAAGTTTCTTACTTCAAGCACCCGACTATTGGGTGCGTCGGCAGAGTC
GTACTTTTTAATGTTCCCCACCTAAAATAAAAGGATTGATTTTAATGAAA
CATGAAATTTAGACAAttgtttttgcattttgatAGCCAGAGTGTCAGGC
GTGATGTTTAACCtcctttcaaaaagttttcactaCACTTATACAGGTGC
TTGATAGCAAACAAACCTTCGTTGTGGTGTGTTACGGCTCGTTTTATTGC
TGTGCTAAATATAGACTATTTTCCATATATGGTCAATTTGCCACAGTGAG
CGTTTGCgttaaatgaataaaaaaatggCACCAGTTGAATCACTAGTCAA
GTCACATCACTGCTCTTTCAAATGCTCTGCTGTGATTTCACTTGAACATA
TTTTAGTTGTAATTAAATTTCATTTCTGAATGATGCAATATTGATTGGTC
AGCATCAGATGTCTGAGTGGTTTGATCGGCCAGGGTGAGGTTGGAATATT
GACTGTATTTTATATTGTTCACCTTTATTTACTTCCAGATGATGTCATTT
GAACCTTATTGAACTGATTTTTGTAATTGGACCATCAAATTCTTTTGAAC
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attgaaagtgtctatagttgcgaaaataggccttaaagcctcctgcaact
caaccaaatagaaatagaaaagtaTATCTCTTATTTACATTCAAAGACAG
CTTCAGAAGGTAGTATCTTGTTGAAACTGTTGGGAAGTATAATAAATGGT
TTGTCAGTCAGAAAGTAAAAATGGTTTGGAAATGTTTAGGATTTTTCAGG
TTTGAGTCTAGTTTTCCTTACATATATATAAGGATTATTTACTTATGTTT
GAGGTAACTTTTATACACTCTGGGTAATGATCATCAGCTCCTAATCCCAG
ACCATCCAAAGCAGTAATATTAATTAAACAGAATGTGTATTTAACCAAGT
TCCATGAAATAATGATTGTTCTCTTGGTCAACTATTTTCAAATTACACAA
ATGATTTCGGTGAAGTTACCACTCAGAAGTTGCTAAAATGCAATATCAGA
GAAATCATTATGCAATTGATTTATGCATGACATTACTTTTATTaggtttt
tttgaaattacaaTTTTGTAAGTCAGGTTGTTTTGATCATACTTTTTGAA
TTGACCAGAAAATGTTATCAAACAATAACACACTGTGCAGCTACCCTGTN
TTTTGATCATACTTTTTGAATTGACCAGAAAATGTTATCAAACAATAACA
CACTGTGCAGCTACCCTGTTTGATTATGTCACCCTTAACCAGGAGGAAAT
ATAGGAGTGAAAGAATCCCTTATTGCAAataatttgatcgaaaataAAAG
AAGATTTAAGTGGTCATTCACTTTCAGATTTTTCAGATAGGACCTTTTCG
GATTCCTCGACTTAATTTCTTGGAAAACACTGAATCCTTTTAGTAAAGTA
AAGCTGACGTAGACCTACAGgctaagaaacaaaaaagtaaaataagtaCT
GAGCAACGGTGTGACTTAATTCATAGTGAAATAGGAGGCAAATAGAGATT
AAAGGACAAGGAATCCTTTGTAAGCCGTGCTTTTCTAGTTTACTTTCATT
ATTCTCTTACTTTTCAGGGATGCACGTGCATATAGTTGGACATGTCCCCG
ATAGTTTACCAACACAATTACcaccaaaaaaattaatcacACTAAACAAA
ACAACCAAGGAGAATGTTATTCACGTAATCACAGCAATGTAAAAACTTGT
TTACTTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015225XLOC_015225Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027089-exon-sc0000606-1491911889:203966..203998TCONS_00027089-exon-sc0000606-1491911889:203966..203998Clytia hemisphaericaexon
TCONS_00027089-exon-sc0000606-1510915933:203966..203998TCONS_00027089-exon-sc0000606-1510915933:203966..203998Clytia hemisphaericaexon
TCONS_00027089-exon-sc0000606-1575043694:203966..203998TCONS_00027089-exon-sc0000606-1575043694:203966..203998Clytia hemisphaericaexon
TCONS_00027089-exon-sc0000606-1491911889:208633..208773TCONS_00027089-exon-sc0000606-1491911889:208633..208773Clytia hemisphaericaexon
TCONS_00027089-exon-sc0000606-1510915933:208633..208773TCONS_00027089-exon-sc0000606-1510915933:208633..208773Clytia hemisphaericaexon
TCONS_00027089-exon-sc0000606-1575043694:208633..208773TCONS_00027089-exon-sc0000606-1575043694:208633..208773Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000606supercontigsc0000606:203966..208773 +
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027089 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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