TCONS_00027093 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027093
Unique NameTCONS_00027093
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1373

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027093 ID=TCONS_00027093|Name=TCONS_00027093|organism=Clytia hemisphaerica|type=transcript|length=1373bp
tgatttttcaatcaaaattttaaggtTATTATGTTGCGCGCCAAAgcctt
cttttttataaaattagaatattgtatcaaaatgcAATATTAAAAGAGCA
AAAAAGCTCGTAGTCACCTAAGCAATACGTTTATTGATATTTCAACGATA
AAGAAGAAGACAGAATGGCAAGTATTGAAGAAGGTCAAGAGGAAAAAGAG
TCTACACCATTACTACAGAGCGAAGAAGAAGAAACACCGAAGGATTTAGA
AAAAAGCAAAGGCGATGGAGTGGTTGGTGAAGGGTCTGTGCAAGAAAATG
GCACTACAACTAATGGTAACGAaagATCAACGACAAACGAAGATTCTTCA
CCGGCGGCATCACCTCCATCTTATGAGAGCTTGTTCGGTAAAATGAAAGA
CTGTACTGGTGAAACACTCAACGCATTCGACTTCATGCACGATAGCGCTA
ATATTCTACTACAAACTAATTTGTGTATGATTGTCATGTTGGTTATGCTG
GCTCTTCCAATCGCCTCTATTGTCCTTGGCTCACTATACATTGATCAATG
tccaaaaaaacattacataCCGATTTACTTAATTGTTGTTGGATCATTTT
CCATCTTCCAACAACTTCTCAATATTTGTACACGATTTACAAGACGTAAC
GACAACGATTCTGGTCAACGTCATTTATCGTGCGATTGTTATCGGTGTTG
TCGAAGTGTTATCAATCTTTTTGTATTCATGTGGTTTATTGCTGGAAACG
TATGGATTTATTCAGCATATGAGCCAAATTATACGGACCGGTCAAGTCCC
GATTTTTGCCATAAGACATTGTACTTATTTGCCTTTTGGATGACAACATC
TGTTTATATCGTATTAGCATTATCGTGTTGCTGTATTGGTTGTTTCGCAT
GTGGCTCAGCCTGTTGTACCGTTTTTCGCGAAGAGTAGAGATGAGAAATG
AAGATTTAAGATATACGATGACGAGACGTCCGCTTTCTATATTTTTGTCG
AAAGCCATGGTAGCCTCCTCGCCAGTCaaaatcataatattttgatgttG
TGCCTCCAGGGAATACTTTGCTAACGGCGAAAAACTCTGGCTGATATTAA
GAAGCTTTTCTTGTAAAATGCAAGTGATTTTCAAGctgtatttaaagttt
ttttaaaaagtgactGTGTTTTGCTCTCGATTTGCgcaattttgagaaat
attttaaaggagatgaaattcaaaaattatgaatATTCTTTACCTAAGTC
TAATAAAAACGCCGATTTCTCAATCTCCGGTGAAATTCGATGGTGAATAA
TGTGATGAAAAGATATCAATAAGACTGTTACGTAATCATGGCCTACAAGA
TGTCATCTTTTTATCAATAATAA
Run BLAST on NCBI

transcript from alignment at sc0000606:17228..21315-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027093 ID=TCONS_00027093|Name=TCONS_00027093|organism=Clytia hemisphaerica|type=transcript|length=4088bp|location=Sequence derived from alignment at sc0000606:17228..21315- (Clytia hemisphaerica)
TGATTTTTCAATCAAAATTTTAAGGTTATTATGTTGCGCGCCAAAGCCTT
CTTTTTTATAAAATTAGAATATTGTATCAAAATGCAATATTAAAAGAGCA
AAAAAGCTCGTAGTCACCTAAGCAATACGTTTATTGATATTTCAACGATA
AAGAAGAAGACAGAATGGCAAGTATTGAAGAAGGTCAAGAGGTTAGTTTC
GTTAGATTTTATTCCATAAATTCTCAAATAACTACTGGGTTTATTATAGA
CGTCACCCGCGTTTTTTTTACGCAATTAACGTGTATTCCACTTTGTGACT
TTTTCGAATGTTTGGAACCCACCAGGTTTTTGGGTTAGAGCCCGATTTTT
TGACGTCATTTAATATTTCAAGGCTCCTTCATTTGAAAAAAATCAAATTT
TCGTCAATACACTTCTTTTTTTTTCGAAATATTCGTCAAAGTGGAACTCA
CCAAGAAACGGAATGAAAAATCTCGGTTTTTGGTGAGGTGCTCGCTACAG
GGTTAAAGCAGGATATGCATTTTTCATAAATCCATTTAGTATAGTAAGAT
AACGCTAATATTACATCCTGATGCTTACGATGAACATTATCTACGTCGTT
TTTAAATAACTTTTCTACGTCGTTTTGCGCCATTTTAATTCACAACTTAC
AGTCAACGTACTGGCGACCTAATTTTGTGATTTGACGATTTGACAACGAC
GTACTTATATTTCCACGTTGGGAGCAATCACCTTGTGAATGTTCATTTGG
TTTGTATTGTGTCTAATCTCTTTCTAAACTCCATTCGTGTGCACTTTTCT
GATACACGGGTTGCAAAATTATATCAATGCCAATGCAATCAAAACATGTG
CTTAGCTTACTCAAAAAGGTTCACGTGGTTTTATTCCCATGTTACTTGCT
TTACAACTTACAGCTGATACAGCTTTATTAGTGTCAACCAATCAGAAATT
AATGTCATGTAACAAGCACATAAAAATTTCGAGTAAATGCGTGATTTATC
GTCAGACTTTAATTTTGCAACCTGTGATAACCATGTCAGGGTAATTAGAC
TAAGACTGGTTTCCACACGGTGGCAAGAAAGATGCACACTTAAAGTGAAT
AGACCTTAATTACATACCACCTGGCTTATAGGAAAAAGAGTCTACACCAT
TACTACAGAGCGAAGAAGAAGAAACACCGAAGGATTTAGAAAAAAGCAAA
GGTAAGTGGAATACGAAGTATTCTGAATTTCCTGAAAAAGAACAAAATCA
ATATATTTGGCCAAGTGATAGTATGTATATACATAAGTTAAAAGCGAATA
ATAAAAGGCAAACCAATCTGAAAAGTATCACAAATCCACATCGAAAGAAT
GGTGGCATAACCTTGCGGTCACGCCGGGTGCACTAAAGGGCTAATGATAA
GAGTGTGAAAAGAATCTCAAAAGGTACGAATCTAAAGAAAAATTGACTAA
CAATTTCTCTTGGTAGTTTCATGAATTTCAATCTCATTCATATCAACGTT
CATTTCGAACAGTTCTCGAGCCACGTAAGCATAGGATAGCTGAACGTACC
GAGCAAAACGAGGGTTTAGTTCTCAACCAATTCAGCATTGTACAAAATTG
AAATGTCTTTTTTGTATGAGAAAGTTCCTGAAGGTGCGGATGAATCGAAT
TATTGACAAACTTCATGATTATAATGGATGTCTTGCTTTCCAGTCTTGTA
ACCAGAGCTACTTGTACCACTTTTTGATTTTACCGATGAAACGTTTGAGC
GCAGTTTTGAGCGATGCTTTATATCAGAAGCAAGCAAAGAGGCTAATTTT
GATCGAGTTCGATACTTTGTAATCTTTCAATTATATGATGATTAAGATTT
CCGTTATTTTTCAGGCGATGGAGTGGTTGGTGAAGGGTCTGTGCAAGAAA
ATGGCACTACAACTAATGGTAACGAAAGGTATTTATTTTGAAAAGTATGA
TTCACTTGCACTGAACTAGTGCCAACTATGAATTTCAAGGTAGGTGGGAA
ACACATCTGATGTGATAGAATCTAATAATACTAAAATGTCATTTTACTAC
CAAATTTTTGTTAGATTTATATTCGGCTTCTCTATAATTCTAGATCAACG
ACAAACGAAGATTCTTCACCGGCGGCATCACCTCCATCTTATGAGAGCTT
GTTCGGTAAAATGAAAGACTGTACTGGTGAAACACTCAACGCATTCGACT
TCATGCACGATAGCGCTAATATTCTACTACAAACTAGTGAGCTCTTTTGT
AATATCGGTCCTTCCAAATCCTTTCCTGAAAAACGATCTTTCAATCTAAC
GGGCGCAAAATTGGCTGGATTTTTTTTAAACAAAAGCGTTTTCGTCAACT
TAAAAAGGCATATTCGGAATTTGACCCCTTGTTTTATATATGTGTGCTAG
GAAGGGAAGGCTCCCTAAATAGGGGTCGAGTTCAGGGTTTTAAGGTGTTT
CTAATGGGAAAATGATGTAATTTTGACCACATTTATATACAATCAATGTC
GCTCCCAACATGCTTGAATGATACTTCTAATCTTTTTCATGTCAGATTTG
TGTATGATTGTCATGTTGGTTATGCTGGCTCTTCCAATCGCCTCTATTGT
CCTTGGTAAATATGTTGTTTCAATTCTTTACTATCGCATCTAAAGAGATT
GTATGTACACAAACTCAGTATCTACGGCTTATTTCGAAATTCATTGTACT
GTACTACGAAGCGATAAACAGTGAAATAAACTCTGGTACAGAGTACTAAA
GAGAGTGATATTCATCAGTGCGTCCGGAAAAAGCGGACAGATGTCAGATG
TCATACATTGAAAATCCTGATTTTTATGAATTTTACGACGTAGTCGGTCA
ATTTGTTCTTCAAAGATTTTATAATATTGTCTATAGAAATATGAATAGGT
TTTGGCTGAACAAACAAATTCCTGTATACTTCAATTCTTTTGAACTCAAA
AACCTCAAAAATCTTTTCGGGCACACGGCAATTTAGTCATTCCTTTGCCT
TGTCGATTTGGTCAGGACGAACGTAAAAGTAATAGAGAGGGTACCAACTA
CTAGACATTGGTAATCTTTTGTCTTTTGTTTATCTTGAGAATTCTTACTG
AGAGTCTAAATTTGATTCAAGTGGGATAAAAGTAAAACAAATTTTTCCAC
CAAATCTGACATAATTAAGCAGTAAATATCTTTTCCCCATAGCGGTAACC
ATAGATCGATTGCATTTAATATTCTCAATCCTTTCTATTGTAGGCTCACT
ATACATTGATCAATGTCCAAAAAAACATTACATACCGATTTACTTAATTG
TTGTTGGATCATTTTCCATCTTCCAACAACTTCTCAATATTTGTACACGA
TTTACAAGACGTAACGACAACGATTCTGGTCAACGTCATTTATCGTGCGA
TTGTTATCGGTGTTGTCGAAGTGTTATCAATCTTTTTGTATTCATGTGGT
TTATTGCTGGAAACGTATGGATTTATTCAGCATATGAGCCAAATTATACG
GACCGGTCAAGTCCCGATTTTTGCCATAAGACATTGTACTTATTTGCCTT
TTGGATGACAACATCTGTTTATATCGTATTAGCATTATCGTGTTGCTGTA
TTGGTTGTTTCGCATGTGGCTCAGCCTGTTGTACCGTTTTTCGCGAAGAG
TAGAGATGAGAAATGAAGATTTAAGATATACGATGACGAGACGTCCGCTT
TCTATATTTTTGTCGAAAGCCATGGTAGCCTCCTCGCCAGTCAAAATCAT
AATATTTTGATGTTGTGCCTCCAGGGAATACTTTGCTAACGGCGAAAAAC
TCTGGCTGATATTAAGAAGCTTTTCTTGTAAAATGCAAGTGATTTTCAAG
CTGTATTTAAAGTTTTTTTAAAAAGTGACTGTGTTTTGCTCTCGATTTGC
GCAATTTTGAGAAATATTTTAAAGGAGATGAAATTCAAAAATTATGAATA
TTCTTTACCTAAGTCTAATAAAAACGCCGATTTCTCAATCTCCGGTGAAA
TTCGATGGTGAATAATGTGATGAAAAGATATCAATAAGACTGTTACGTAA
TCATGGCCTACAAGATGTCATCTTTTTATCAATAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015227XLOC_015227Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027093-exon-sc0000606-1575043694:21125..21315TCONS_00027093-exon-sc0000606-1575043694:21125..21315Clytia hemisphaericaexon
TCONS_00027093-exon-sc0000606-1575043694:20115..20184TCONS_00027093-exon-sc0000606-1575043694:20115..20184Clytia hemisphaericaexon
TCONS_00027093-exon-sc0000606-1575043694:19388..19451TCONS_00027093-exon-sc0000606-1575043694:19388..19451Clytia hemisphaericaexon
TCONS_00027093-exon-sc0000606-1575043694:19080..19222TCONS_00027093-exon-sc0000606-1575043694:19080..19222Clytia hemisphaericaexon
TCONS_00027093-exon-sc0000606-1575043694:18711..18770TCONS_00027093-exon-sc0000606-1575043694:18711..18770Clytia hemisphaericaexon
TCONS_00027093-exon-sc0000606-1575043694:17228..18072TCONS_00027093-exon-sc0000606-1575043694:17228..18072Clytia hemisphaericaexon
TCONS_00027093-exon-sc0000606-1510915933:21125..21315TCONS_00027093-exon-sc0000606-1510915933:21125..21315Clytia hemisphaericaexon
TCONS_00027093-exon-sc0000606-1510915933:20115..20184TCONS_00027093-exon-sc0000606-1510915933:20115..20184Clytia hemisphaericaexon
TCONS_00027093-exon-sc0000606-1510915933:19388..19451TCONS_00027093-exon-sc0000606-1510915933:19388..19451Clytia hemisphaericaexon
TCONS_00027093-exon-sc0000606-1510915933:19080..19222TCONS_00027093-exon-sc0000606-1510915933:19080..19222Clytia hemisphaericaexon
TCONS_00027093-exon-sc0000606-1510915933:18711..18770TCONS_00027093-exon-sc0000606-1510915933:18711..18770Clytia hemisphaericaexon
TCONS_00027093-exon-sc0000606-1510915933:17228..18072TCONS_00027093-exon-sc0000606-1510915933:17228..18072Clytia hemisphaericaexon
TCONS_00027093-exon-sc0000606-1491911889:21125..21315TCONS_00027093-exon-sc0000606-1491911889:21125..21315Clytia hemisphaericaexon
TCONS_00027093-exon-sc0000606-1491911889:20115..20184TCONS_00027093-exon-sc0000606-1491911889:20115..20184Clytia hemisphaericaexon
TCONS_00027093-exon-sc0000606-1491911889:19388..19451TCONS_00027093-exon-sc0000606-1491911889:19388..19451Clytia hemisphaericaexon
TCONS_00027093-exon-sc0000606-1491911889:19080..19222TCONS_00027093-exon-sc0000606-1491911889:19080..19222Clytia hemisphaericaexon
TCONS_00027093-exon-sc0000606-1491911889:18711..18770TCONS_00027093-exon-sc0000606-1491911889:18711..18770Clytia hemisphaericaexon
TCONS_00027093-exon-sc0000606-1491911889:17228..18072TCONS_00027093-exon-sc0000606-1491911889:17228..18072Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000606supercontigsc0000606:17228..21315 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.097484	0	0	0.336503	1.42618	1.69847	0.588405	0.879335	1.35366	2.16437	2.38082	0.777476	4.64472	1.91521	1.39934	0	0	0.669531	0.431123	0	0.728432	1.14211	0.963621	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027093 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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