TCONS_00027094 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027094
Unique NameTCONS_00027094
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1528

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027094 ID=TCONS_00027094|Name=TCONS_00027094|organism=Clytia hemisphaerica|type=transcript|length=1528bp
ATCAAATCTGGGCGTCCTGAAGGCGGAAGCTTTACGCCGGGGCGCGCGGG
AGGTTAAAATTCCCGCTTGAAGAAGATAGAGACTTTTGAACTGAATGTGA
GTAAAGCTTTTTGATTATTTCGGTTATTCTGAATGATATCTAACAGAgag
gattttgatttttcaatcaaaattttaaggtTATTATGTTGCGCGCCAAA
gccttcttttttataaaattagaatattgtatcaaaatgcAATATTAAAA
GAGCAAAAAAGCTCGTAGTCACCTAAGCAATACGTTTATTGATATTTCAA
CGATAAAGAAGAAGACAGAATGGCAAGTATTGAAGAAGGTCAAGAGGAAA
AAGAGTCTACACCATTACTACAGAGCGAAGAAGAAGAAACACCGAAGGAT
TTAGAAAAAAGCAAAGGCGATGGAGTGGTTGGTGAAGGGTCTGTGCAAGA
AAATGGCACTACAACTAATGGTAACGAaagATCAACGACAAACGAAGATT
CTTCACCGGCGGCATCACCTCCATCTTATGAGAGCTTGTTCGGTAAAATG
AAAGACTGTACTGGTGAAACACTCAACGCATTCGACTTCATGCACGATAG
CGCTAATATTCTACTACAAACTAATTTGTGTATGATTGTCATGTTGGTTA
TGCTGGCTCTTCCAATCGCCTCTATTGTCCTTGGCTCACTATACATTGAT
CAATGtccaaaaaaacattacataCCGATTTACTTAATTGTTGTTGGATC
ATTTTCCATCTTCCAACAACTTCTCAATATTTGTACACGATTTACAAGAC
GTAACGACAACGATTCTGGTCAACGTCATTTATCGTGCGATTGTTATCGG
TGTTGTCGAAGTGTTATCAATCTTTTTGTATTCATGTGGTTTATTGCTGG
AAACGTATGGATTTATTCAGCATATGAGCCAAATTATACGGACCGGTCAA
GTCCCGATTTTTGCCATAAGACATTGTACTTATTTGCCTTTTGGATGACA
ACATCTGTTTATATCGTATTAGCATTATCGTGTTGCTGTATTGGTTGTTT
CGCATGTGGCTCAGCCTGTTGTACCGTTTTTCGCGAAGAGTAGAGATGAG
AAATGAAGATTTAAGATATACGATGACGAGACGTCCGCTTTCTATATTTT
TGTCGAAAGCCATGGTAGCCTCCTCGCCAGTCaaaatcataatattttga
tgttGTGCCTCCAGGGAATACTTTGCTAACGGCGAAAAACTCTGGCTGAT
ATTAAGAAGCTTTTCTTGTAAAATGCAAGTGATTTTCAAGctgtatttaa
agtttttttaaaaagtgactGTGTTTTGCTCTCGATTTGCgcaattttga
gaaatattttaaaggagatgaaattcaaaaattatgaatATTCTTTACCT
AAGTCTAATAAAAACGCCGATTTCTCAATCTCCGGTGAAATTCGATGGTG
AATAATGTGATGAAAAGATATCAATAAGACTGTTACGTAATCATGGCCTA
CAAGATGTCATCTTTTTATCAATAATAA
Run BLAST on NCBI

transcript from alignment at sc0000606:17228..23168-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027094 ID=TCONS_00027094|Name=TCONS_00027094|organism=Clytia hemisphaerica|type=transcript|length=5941bp|location=Sequence derived from alignment at sc0000606:17228..23168- (Clytia hemisphaerica)
ATCAAATCTGGGCGTCCTGAAGGCGGAAGCTTTACGCCGGGGCGCGCGGG
AGGTTAAAATTCCCGCTTGAAGAAGATAGAGACTTTTGAACTGAATGTGA
GTAAAGCTTTTTGATTATTTCGGTTATTCTGAATGATATCTAACAGAGAG
GATTTTGATTTTTCAATCAAAATTTTAAGGTTATTATGTTGCGCGCCAAA
GCCTTCTTTTTTATAAAATTAGAATATTGTATCAAAATGCAATATTAAAA
GAGCAAAAAAGCTCGTAGTCACCTAAGCAATACGTTTATTGATATTTCAA
CGATAAAGAAGAAGACAGAATGGCAAGTATTGAAGAAGGTCAAGAGGTTA
GTTTCGTTAGATTTTATTCCATAAATTCTCAAATAACTACTGGGTTTATT
ATAGACGTCACCCGCGTTTTTTTTACGCAATTAACGTGTATTCCACTTTG
TGACTTTTTCGAATGTTTGGAACCCACCAGGTTTTTGGGTTAGAGCCCGA
TTTTTTGACGTCATTTAATATTTCAAGGCTCCTTCATTTGAAAAAAATCA
AATTTTCGTCAATACACTTCTTTTTTTTTCGAAATATTCGTCAAAGTGGA
ACTCACCAAGAAACGGAATGAAAAATCTCGGTTTTTGGTGAGGTGCTCGC
TACAGGGTTAAAGCAGGATATGCATTTTTCATAAATCCATTTAGTATAGT
AAGATAACGCTAATATTACATCCTGATGCTTACGANNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
TCGAGGATTATGCCCTAAATAAGAGAATACCCAAGTTAGAGGATTACCTT
ATTTAGGAGATTTTCAGTCTCTTATTTAAGAGAACGTTACCTAAACTAGG
AGAATCCTGCACGTTTCACAAATTTACTTCAGAGCAGACTATTTGCGCAA
TGTGAAAATAAGATCACGTGAAAGATCACGTTTCCGCGATTCCGATGACC
CAAAAACCAAAATAAAATACCTTTTCATTCTTTTTCAAACTTCGAAAAAC
CATAAATATNGGTCCAGACAAGGTGGGTGGGGTGGAGATCTCAAGCAAAA
TAAATATAGCCAAACAACAAAAGTCTGAGCACAATGCAACGAAGGGTAAT
TACAGTAAGATTTTAAATATACCTTTATAAAGTCCTATTTATTAAGAGTG
TAGATACAAAGGAGGTGAATTGATGTAACTGTGTGGTGTGTAATGTGAGT
GAAGTGGAAGTGGAAGCAATTGCATTCTCGCGTGAGTCTGAACCCACATT
CAAAAGTATATAGTAATGAACATAAGTTGCTGGAATGGATAACGGTGCAT
CAATAAATCGCCATCAGAACGCCAACTCCAAAATCATTGGCGTATCTTAT
CAAATCTGGGCGTCCTGAAGGCGGAAGCTTTACGCCGGGGCGCGCGGGAG
GTTAAAATTCCCGCTTGAAGAAGATAGAGACTTTTGAACTGAATGTGAGT
AAAGCTTTTTGATTATTTCGGTTATTCTGAATGATATCTAACAGAGAGGA
TTTTGATTTTTCAATCAAAATTTTAAGGTTATTATGTTGCGCGCCAAAGC
CTTCTTTTTTATAAAATTAGAATATTGTATCAAAATGCAATATTAAAAGA
GCAAAAAAGCTCGTAGTCACCTAAGCAATACGTTTATTGATATTTCAACG
ATAAAGAAGAAGACAGAATGGCAAGTATTGAAGAAGGTCAAGAGGTTAGT
TTCGTTAGATTTTATTCCATAAATTCTCAAATAACTACTGGGTTTATTAT
AGACGTCACCCGCGTTTTTTTTACGCAATTAACGTGTATTCCACTTTGTG
ACTTTTTCGAATGTTTGGAACCCACCAGGTTTTTGGGTTAGAGCCCGATT
TTTTGACGTCATTTAATATTTCAAGGCTCCTTCATTTGAAAAAAATCAAA
TTTTCGTCAATACACTTCTTTTTTTTTCGAAATATTCGTCAAAGTGGAAC
TCACCAAGAAACGGAATGAAAAATCTCGGTTTTTGGTGAGGTGCTCGCTA
CAGGGTTAAAGCAGGATATGCATTTTTCATAAATCCATTTAGTATAGTAA
GATAACGCTAATATTACATCCTGATGCTTACGATGAACATTATCTACGTC
GTTTTTAAATAACTTTTCTACGTCGTTTTGCGCCATTTTAATTCACAACT
TACAGTCAACGTACTGGCGACCTAATTTTGTGATTTGACGATTTGACAAC
GACGTACTTATATTTCCACGTTGGGAGCAATCACCTTGTGAATGTTCATT
TGGTTTGTATTGTGTCTAATCTCTTTCTAAACTCCATTCGTGTGCACTTT
TCTGATACACGGGTTGCAAAATTATATCAATGCCAATGCAATCAAAACAT
GTGCTTAGCTTACTCAAAAAGGTTCACGTGGTTTTATTCCCATGTTACTT
GCTTTACAACTTACAGCTGATACAGCTTTATTAGTGTCAACCAATCAGAA
ATTAATGTCATGTAACAAGCACATAAAAATTTCGAGTAAATGCGTGATTT
ATCGTCAGACTTTAATTTTGCAACCTGTGATAACCATGTCAGGGTAATTA
GACTAAGACTGGTTTCCACACGGTGGCAAGAAAGATGCACACTTAAAGTG
AATAGACCTTAATTACATACCACCTGGCTTATAGGAAAAAGAGTCTACAC
CATTACTACAGAGCGAAGAAGAAGAAACACCGAAGGATTTAGAAAAAAGC
AAAGGTAAGTGGAATACGAAGTATTCTGAATTTCCTGAAAAAGAACAAAA
TCAATATATTTGGCCAAGTGATAGTATGTATATACATAAGTTAAAAGCGA
ATAATAAAAGGCAAACCAATCTGAAAAGTATCACAAATCCACATCGAAAG
AATGGTGGCATAACCTTGCGGTCACGCCGGGTGCACTAAAGGGCTAATGA
TAAGAGTGTGAAAAGAATCTCAAAAGGTACGAATCTAAAGAAAAATTGAC
TAACAATTTCTCTTGGTAGTTTCATGAATTTCAATCTCATTCATATCAAC
GTTCATTTCGAACAGTTCTCGAGCCACGTAAGCATAGGATAGCTGAACGT
ACCGAGCAAAACGAGGGTTTAGTTCTCAACCAATTCAGCATTGTACAAAA
TTGAAATGTCTTTTTTGTATGAGAAAGTTCCTGAAGGTGCGGATGAATCG
AATTATTGACAAACTTCATGATTATAATGGATGTCTTGCTTTCCAGTCTT
GTAACCAGAGCTACTTGTACCACTTTTTGATTTTACCGATGAAACGTTTG
AGCGCAGTTTTGAGCGATGCTTTATATCAGAAGCAAGCAAAGAGGCTAAT
TTTGATCGAGTTCGATACTTTGTAATCTTTCAATTATATGATGATTAAGA
TTTCCGTTATTTTTCAGGCGATGGAGTGGTTGGTGAAGGGTCTGTGCAAG
AAAATGGCACTACAACTAATGGTAACGAAAGGTATTTATTTTGAAAAGTA
TGATTCACTTGCACTGAACTAGTGCCAACTATGAATTTCAAGGTAGGTGG
GAAACACATCTGATGTGATAGAATCTAATAATACTAAAATGTCATTTTAC
TACCAAATTTTTGTTAGATTTATATTCGGCTTCTCTATAATTCTAGATCA
ACGACAAACGAAGATTCTTCACCGGCGGCATCACCTCCATCTTATGAGAG
CTTGTTCGGTAAAATGAAAGACTGTACTGGTGAAACACTCAACGCATTCG
ACTTCATGCACGATAGCGCTAATATTCTACTACAAACTAGTGAGCTCTTT
TGTAATATCGGTCCTTCCAAATCCTTTCCTGAAAAACGATCTTTCAATCT
AACGGGCGCAAAATTGGCTGGATTTTTTTTAAACAAAAGCGTTTTCGTCA
ACTTAAAAAGGCATATTCGGAATTTGACCCCTTGTTTTATATATGTGTGC
TAGGAAGGGAAGGCTCCCTAAATAGGGGTCGAGTTCAGGGTTTTAAGGTG
TTTCTAATGGGAAAATGATGTAATTTTGACCACATTTATATACAATCAAT
GTCGCTCCCAACATGCTTGAATGATACTTCTAATCTTTTTCATGTCAGAT
TTGTGTATGATTGTCATGTTGGTTATGCTGGCTCTTCCAATCGCCTCTAT
TGTCCTTGGTAAATATGTTGTTTCAATTCTTTACTATCGCATCTAAAGAG
ATTGTATGTACACAAACTCAGTATCTACGGCTTATTTCGAAATTCATTGT
ACTGTACTACGAAGCGATAAACAGTGAAATAAACTCTGGTACAGAGTACT
AAAGAGAGTGATATTCATCAGTGCGTCCGGAAAAAGCGGACAGATGTCAG
ATGTCATACATTGAAAATCCTGATTTTTATGAATTTTACGACGTAGTCGG
TCAATTTGTTCTTCAAAGATTTTATAATATTGTCTATAGAAATATGAATA
GGTTTTGGCTGAACAAACAAATTCCTGTATACTTCAATTCTTTTGAACTC
AAAAACCTCAAAAATCTTTTCGGGCACACGGCAATTTAGTCATTCCTTTG
CCTTGTCGATTTGGTCAGGACGAACGTAAAAGTAATAGAGAGGGTACCAA
CTACTAGACATTGGTAATCTTTTGTCTTTTGTTTATCTTGAGAATTCTTA
CTGAGAGTCTAAATTTGATTCAAGTGGGATAAAAGTAAAACAAATTTTTC
CACCAAATCTGACATAATTAAGCAGTAAATATCTTTTCCCCATAGCGGTA
ACCATAGATCGATTGCATTTAATATTCTCAATCCTTTCTATTGTAGGCTC
ACTATACATTGATCAATGTCCAAAAAAACATTACATACCGATTTACTTAA
TTGTTGTTGGATCATTTTCCATCTTCCAACAACTTCTCAATATTTGTACA
CGATTTACAAGACGTAACGACAACGATTCTGGTCAACGTCATTTATCGTG
CGATTGTTATCGGTGTTGTCGAAGTGTTATCAATCTTTTTGTATTCATGT
GGTTTATTGCTGGAAACGTATGGATTTATTCAGCATATGAGCCAAATTAT
ACGGACCGGTCAAGTCCCGATTTTTGCCATAAGACATTGTACTTATTTGC
CTTTTGGATGACAACATCTGTTTATATCGTATTAGCATTATCGTGTTGCT
GTATTGGTTGTTTCGCATGTGGCTCAGCCTGTTGTACCGTTTTTCGCGAA
GAGTAGAGATGAGAAATGAAGATTTAAGATATACGATGACGAGACGTCCG
CTTTCTATATTTTTGTCGAAAGCCATGGTAGCCTCCTCGCCAGTCAAAAT
CATAATATTTTGATGTTGTGCCTCCAGGGAATACTTTGCTAACGGCGAAA
AACTCTGGCTGATATTAAGAAGCTTTTCTTGTAAAATGCAAGTGATTTTC
AAGCTGTATTTAAAGTTTTTTTAAAAAGTGACTGTGTTTTGCTCTCGATT
TGCGCAATTTTGAGAAATATTTTAAAGGAGATGAAATTCAAAAATTATGA
ATATTCTTTACCTAAGTCTAATAAAAACGCCGATTTCTCAATCTCCGGTG
AAATTCGATGGTGAATAATGTGATGAAAAGATATCAATAAGACTGTTACG
TAATCATGGCCTACAAGATGTCATCTTTTTATCAATAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015227XLOC_015227Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027094-exon-sc0000606-1575043694:22823..23168TCONS_00027094-exon-sc0000606-1575043694:22823..23168Clytia hemisphaericaexon
TCONS_00027094-exon-sc0000606-1575043694:20115..20184TCONS_00027094-exon-sc0000606-1575043694:20115..20184Clytia hemisphaericaexon
TCONS_00027094-exon-sc0000606-1575043694:19388..19451TCONS_00027094-exon-sc0000606-1575043694:19388..19451Clytia hemisphaericaexon
TCONS_00027094-exon-sc0000606-1575043694:19080..19222TCONS_00027094-exon-sc0000606-1575043694:19080..19222Clytia hemisphaericaexon
TCONS_00027094-exon-sc0000606-1575043694:18711..18770TCONS_00027094-exon-sc0000606-1575043694:18711..18770Clytia hemisphaericaexon
TCONS_00027094-exon-sc0000606-1575043694:17228..18072TCONS_00027094-exon-sc0000606-1575043694:17228..18072Clytia hemisphaericaexon
TCONS_00027094-exon-sc0000606-1510915933:22823..23168TCONS_00027094-exon-sc0000606-1510915933:22823..23168Clytia hemisphaericaexon
TCONS_00027094-exon-sc0000606-1510915933:20115..20184TCONS_00027094-exon-sc0000606-1510915933:20115..20184Clytia hemisphaericaexon
TCONS_00027094-exon-sc0000606-1510915933:19388..19451TCONS_00027094-exon-sc0000606-1510915933:19388..19451Clytia hemisphaericaexon
TCONS_00027094-exon-sc0000606-1510915933:19080..19222TCONS_00027094-exon-sc0000606-1510915933:19080..19222Clytia hemisphaericaexon
TCONS_00027094-exon-sc0000606-1510915933:18711..18770TCONS_00027094-exon-sc0000606-1510915933:18711..18770Clytia hemisphaericaexon
TCONS_00027094-exon-sc0000606-1510915933:17228..18072TCONS_00027094-exon-sc0000606-1510915933:17228..18072Clytia hemisphaericaexon
TCONS_00027094-exon-sc0000606-1491911889:22823..23168TCONS_00027094-exon-sc0000606-1491911889:22823..23168Clytia hemisphaericaexon
TCONS_00027094-exon-sc0000606-1491911889:20115..20184TCONS_00027094-exon-sc0000606-1491911889:20115..20184Clytia hemisphaericaexon
TCONS_00027094-exon-sc0000606-1491911889:19388..19451TCONS_00027094-exon-sc0000606-1491911889:19388..19451Clytia hemisphaericaexon
TCONS_00027094-exon-sc0000606-1491911889:19080..19222TCONS_00027094-exon-sc0000606-1491911889:19080..19222Clytia hemisphaericaexon
TCONS_00027094-exon-sc0000606-1491911889:18711..18770TCONS_00027094-exon-sc0000606-1491911889:18711..18770Clytia hemisphaericaexon
TCONS_00027094-exon-sc0000606-1491911889:17228..18072TCONS_00027094-exon-sc0000606-1491911889:17228..18072Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000606supercontigsc0000606:17228..23168 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	1.17709	0.826483	0.19288	0	0	0	0.152227	0.632356	0.259941	0.139478	0	0	0	0	0.221303	0.323831	0.12596	0.238595	0.245748	0.438648	0.245692	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027094 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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