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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027114 ID=TCONS_00027114|Name=TCONS_00027114|organism=Clytia hemisphaerica|type=transcript|length=6185bp
catgaaaagaaaagaaattaccATTCTCAAAGCAAagagaaaataaatga
aaacaaaagaaattatcgttcccagaacaaagaaaaaataaaagaaacaa
ataGAATCTATTGTgctcaaaacaaagcaaaagtgaatgaaaaaaataaa
atctatcatCAAAATAACAGAGATAGTgtaggtgaaagaaaaaaatcatt
ctacCAAAAAAATAATCCAACTGcaaacaaagacaaaaaaaatgatctag
tgtcaaagtttttaaaactaATTTACGAAGGTCCTTTTTACATTTGTGTT
TGCTGTAATAGATGTCTCTATCGACAAACAGTTGTTAAATATTCACCTGA
AAAGTATGATACACCACAAGAACTTTATTATTCTGAAGTTTTTTCATTTG
ATGGCCAACTATATATTTGCAAAACGTGTCAtagcaaacttaaaaaaaat
gagtTACCATGtcaatctgtcaaaaataaactTGGCCTTGATGAATTACC
TgctgaatttcatactcttcGCAGGCttgaaaagattttaatttctcgta
gaatattattcaaaaaaattgcaatAATGCCAAAAGGTCAGTTCCCCAAA
CTCAAAGGATCTATTTGTAATGTACCTATTGATGTCGAAGATATTGCTAA
TACTTTACCAAGAAGAGCAAATGATAATGGATTAGTCATTGTTAAACTCA
AAAGGAAATTAGAATACAAAGGACATGTTGTTTTTGAGCCAATCAGACCT
GATTTCATTCAGCGTGTATtaaattatttcaaagaaaacaaCCCTCTTTA
TCAAGACATAGAAGTTGATGTCAGTAATATTTCGAATGATGAGACCATGA
TACAGAATGCTGCGGATCTTAACGATGAAGCAAATTCTAATGAAAATAAC
CTATCggatgaaaatgtttttagtGACAATAATCGTGAACCTGATGAACC
ACAGAATAATGCTTCAGATTCTGAAGAGCTTGAGACAACCGACAACCCAC
TTGATGACCATCGCTCAAATGCAAACGAAACTACTCTAATGCCTCACACT
CCTTCTGATGCAGAAgtagataatgaaattttgtcGTTAGCGCCTGGTCA
GGGTAAAAAGCCTATTTCAATCTTGAATgatgaaaattgtgaaatgCTTG
CGCATCCTCATTTATTTCCTAAAGGGAACTTTGGTTACAAAGTTGAACGT
GATGTTAAACTAAGTCCATCCAAATACTTCAACCAGCGTTTGTTGAATTA
CACACAAAAGTTTGCTTCGGACCCAGACTACatattttttgctaattttg
taACTCAGCAAGTATCTTTGACCAATCAGATAAATGTTGCAATGAGAAAA
GTTGCTGGCTCAAATTTAAATGCTGGTATGTTAAGtcagaatttcaaaga
aacagtAAGGCAATTCATTGCAAATGATAAAGCTTTTGCCTTCATGAGTA
CTGTTAAAGGAACTCCAGCATATTGGAAAAAATTCCAGCAAGAAGTTTTA
GCAATGGTTAAACAATTAGGACCACCAACGTTCTTTCAGACCTTGAGTTG
TGCGGACCTTAGATGGAACGAACTGATCTCCATAATTTACAAACTCAAGG
GTCAAAATGTAACCAATGAATTTATCGAGAATCTTTCTTACAACGAAAGG
TGTGATTTATTAAATAGTAACCCTGTACTTGTAGCAAGGCATTTTCAATA
CAGAGtagaagtattttttaaaacgATTGTTTTGGACGGCCCACTCGGTA
AAACAACTTTCTACGCTATTCGAGTAGAATTTCAAGTACGCGGAAGCCCT
CACATTCATTCCTTTCTATGGATTTTAAATGCACCAGTATTGACCAAGGA
AACAAAAGCTGAGTACATTGTGTTTATTGATAAAATAATCAAGGTCTATT
TACCATCTGTAGAAGAGGATCCTGAATTGTTTAACCTTGTAAAAACATAC
CAATTACATCGCCATTCAAAAACTTGCCGTAAATATAGAAACACCCCCTG
CAGAttttattttggtaaatttttttctgagaaaacAATAGTCTCTGAAC
CCTTGCCACAAGAACTACCGCATGATGAAAGAGAAGCTATACTTGCCCTG
CGAAAAGAAGTTTTGACAAAAGTTAAGACTTACATCAATGAAAACCTGAA
TCCTgataaaagaaactttttcaaccctGATGGAGAAAATTACAATCCAG
TTCCCACCATCAATGAAGTCCTAGCTGAATTGGATATTCCAAAGGAGGAT
TATGAATATGCTCTCTCTGTATCTGAAGATGAGGATTTTCACATTTACTT
AAAACGTGACACAAATGCATGTTTTGTGAATAACTACTTTACAGAAGGTC
TCAAAGCTTGGCAAGCAAATTTGGATATTCAACCTGTTTTTAATTATTAC
AAAGCTGCAACTTACATGTGTGCATATCTTTCTAAAACCGAAGATGAAAT
TTCACATGCTATGACTCAAGCTGTTAAAGATGCTTTCGAAAATGGTGGTG
ACAAAtatgaacaaatgaaatctgttGCACATGCCTATGTGTCAAAAAGA
GAAGTGTCAGTGCAAGAAGCAGTTTATCTAAGCATGCCACAGTTATGGCT
TCGGAAGCTTTATCCAGGTGTAACTTTTGCAAATACAAATGTCCCAGAAA
AAAGATTCAGAATGTGTCTTAGTGAAGATGACATTAATGAGTTGCCTGAG
GATAGTACTTCAATCTTCAAAATTAATATGCTGGACAGGTACTGTGATAG
ACCAACAGATAGAGTTGGGCCTAATAAACCTATTGCTGAGATGTGTTATG
CAGAATTCTTGAGATTCTACAGTGTTGTCTACAAAGAATGTGATGAAAAT
GATTGTCAACCTGATGAACTAGAAGATAATTTGATAGAATCAAACCACCC
ATCAAGCAACTACCCAAAGATTGTCAAACTTTGTTCAATAAAAGGTAAAC
TAAAATGCCGCAAAGTTCCACTTGTACTTCGCCTTCATCAACCTAACAGA
AACAAGTACCCGGAAGATTACGCCCACCACCTCCTCATGCTGTATTTACC
CTTCTTTGATGAGAACGAATTATTGTCCCAAGAACACAATAGTTATACTG
CAAAGCTATTGGAACCAGGTGTCATTGAAAGGATTGAGAGAAACAGAGCT
TTGATCCAACCCTATGCTGGTTTAGTAGATGATGCATTAGAAAGGTACAG
AAATGATTTGATTCTCAATATGAATGATTTTGAACAGCAGGAGAATGATG
AAACAAATGCAGAGCTTCAAAGTAGACCAAACAATAATGAAGAATCAGAT
GATGAAAATAACAATGACACTCatgtcagagcttcaattccaATGGAATC
AGTTTTGCTCCCAGATAATGAAGTAAATGCTCGTATTAGATCTCTAAATT
ACCAACAAAGAGAAGTTTTTGATGTAGTTCACAAATGGGGAAGAGATTTC
GTTAAAAACCTTTCTTCAAAAGTGCCTAAATGTATTGAGCCATTTCATAT
TTTCTTAACTGGTGGCGGAGGCGTAGGAAAAAGCCATTTACTCACAACAA
TCTATCATTCTTTGTCAAACCTTCTTATGTACAGAGGAGGAGAACCcaca
aaagaaagaattttagttCTTGCACCGACTGGCGTAGCAGCAATTAATGT
CAATGGAACCACCATACACAGCGGTTTGATTATTCCTACTCCAGATTTCC
TTCCACTGAATGCATCATCaaagcaaaatttgcaaaagaaacttGCATGT
GTGGAAGTCATTATGATTGATGAAATTTCCATGGTGTCTAGCCGCttgtt
tagaaatattgatGAAAGGTtacgcaaaatatttgaagtaGATAAACCTT
TTGCTGGAAAGTCAGTTCTGCTTTGTGGTGATTTATTTCAACTTCCACca
gtttttaaagattttatctaCAAACCAGATTGCTCCACAGTACATGGTAT
AATTGGTTTTGAATTATGGCGTAAATTTCAAATCGCTGAATTGACAGAGA
TCATGAGACAGAGAGATGATATTGATTTTATTGACCTCTTGAATCAAATT
CGTTTAGGCGAGCTNGTATAATTGGGTTTGAATTATGGCGTAAATTCCAA
ATCGCTGAATTGACAGAGATCATGAGACAGAGAGATGATATTGATTTTAT
TGACCTCTTGAATCAAATTCGTTTAGGCGAGCTAGACGAAGAAAaggaag
aacttttaaaatctagATTTATTGCAAAAGACAGTCCAGATTATCCCTCT
GATGTAACTCATATTTTTGCAGAAAATAAACCGGTCGATGTATATAACAT
GCAAAAACTCAATGAATTGCCAACtgaaaaacatttgatttttgcACAAG
ATGAAGTTCCAAAGCATTTAACAAACCAAGATGTCAGATTTATTGAAACT
GCAAAAGCAAGAGAAACAGGTGGTCTTGCCCGTGTATTAGAATTGAAAGT
AGGTGCCCGAATTTTAATTTGCAAGAATATTGACATTACTGATAGATTAG
TTAATGGCCAAGTTGGAACAGTAATGGAATTTAAATATAATTCCAGTAAT
ACCATATCAGGTGTCTATGTTAAGCTTGATGATGTCTTAGCAGGCAAGAA
AGGACCTAATATAGATCATGTTTGCAGAGAAAATGATTGGATATTGATTG
AAAGGGCAGAAGCAACCTTTAAcacaagaaaagaaaagaagaagaaaaag
aaaaaggaaaaaccgaAGGACTCAATTTCCTTTAGTTTTATCCTATGCAT
GCACAAGCCATAAAGTCCAAGGACTAACACTACAATCAGCAGTAGTAAGT
TTTGACTTATTATCACAAAGATATTTCAATGAAGGACAAATGTATGTTAG
CTTATCCAGAGTTACAAACATCAATGGATTGTTTTTGACCGGTGAATATG
ATAGAAGAGCTATCCGTGCAAACAATGAGGCAGGACTTGAATATGAACGT
TTACGAAGAGATAGACCTTTGCATCaagttgaaagtttttcatcaGCTTT
GACTCCAAGTAAACATGTTCAAATTTCACTTCTTAATGTCCGCTCTTTGA
AGAAACATGCAGTTGACATTACAAAATGTAAAACTCTCATGAGCAGTGAC
TTACTATGTCTTACTGAAACTCAATTGTCACCTTCAAGTGATACAAATGA
GGTTGACCAAATACTAGGTGATTTCAATATTGAATACAATAACAATTCTG
TCAATCGATTCCAAAACACTGCATGTTGTTTTAATTCTTCAGTTCAAATT
TTAGAGTGTGATAGGGCCGCAGGTTACACTTGTATCAAATTTTTAAAGGA
AACTTTCAGTAACCAACCTATTAAACTTTTAATATTGTACAAACCACCTG
ATTATTCAAGAAACAGTTTTCGTGAAGAATTGTTGGAACTTACAATGTAT
GATGACATAGACATTATTGTGGGAGATTTCAACATTGATGCATTAAATCC
TGAAAACACATGCCTGAATGAAGTACTTTCTTCATATGAAATGGTAGTGA
ATGAACCAACTCATCTAGCAGGTGGTCTTCTTGACCATGTTTATTTAAAG
AACAGCTTTACAGATAAAAAAGAAGTCAAGTGTTTTCTAAAGAGCATTTA
TTTTTCTGACCACGATGGAATTTGTTTCACTATAACAAACAACACTTAGT
TTTTCAAACCTATTAACCTACTTGACCTACTTGACCTACTTGACCTACTT
GACAAACATTTTTATATGGGGATATAGAACAGGGTGGGGGGTGAAGGAGT
TGCAAAACTCCacaattaaaattatttttgataaacTGTAACATTCAATG
ATTAATGAAATATGTACTTTGCTGCTGAGATTTGCAACTCCTTTTTACAC
AACCATGTGTATGTAAATCTTTTACTCGTTGAAATGTAAAGAAAGCTCAT
CGAATATATGGCTTCATATATAGACTTGCTCAAATCAAATTTATCTCAAC
GCTGAAATGTTACATGCACATGGTTGTTTTACTTGGGGATCTAATTTAAT
ATGGATAGTGTGAGGGTTTTGTCCTTCTTGTGACATGTTTGCTATTGATT
TTTTAGAAAGAGCTTTTCACACTCTATTTAAAAAAGTGAGCCTAACCAGT
CAAGTATTGTTGAGTATCACCAACAATTTTATCTTCCTGTGTtctgttga
aaatgttgatcttGCCACAAAAACTCTGAATGTCT Run BLAST on NCBI protein sequence of TCONS_00027114-protein >TCONS_00027114-protein ID=TCONS_00027114-protein|Name=TCONS_00027114-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1356bp
HEKKRNYHSQSKEKINENKRNYRSQNKEKIKETNRIYCAQNKAKVNEKNK
IYHQNNRDSVGERKKSFYQKNNPTANKDKKNDLVSKFLKLIYEGPFYICV
CCNRCLYRQTVVKYSPEKYDTPQELYYSEVFSFDGQLYICKTCHSKLKKN
ELPCQSVKNKLGLDELPAEFHTLRRLEKILISRRILFKKIAIMPKGQFPK
LKGSICNVPIDVEDIANTLPRRANDNGLVIVKLKRKLEYKGHVVFEPIRP
DFIQRVLNYFKENNPLYQDIEVDVSNISNDETMIQNAADLNDEANSNENN
LSDENVFSDNNREPDEPQNNASDSEELETTDNPLDDHRSNANETTLMPHT
PSDAEVDNEILSLAPGQGKKPISILNDENCEMLAHPHLFPKGNFGYKVER
DVKLSPSKYFNQRLLNYTQKFASDPDYIFFANFVTQQVSLTNQINVAMRK
VAGSNLNAGMLSQNFKETVRQFIANDKAFAFMSTVKGTPAYWKKFQQEVL
AMVKQLGPPTFFQTLSCADLRWNELISIIYKLKGQNVTNEFIENLSYNER
CDLLNSNPVLVARHFQYRVEVFFKTIVLDGPLGKTTFYAIRVEFQVRGSP
HIHSFLWILNAPVLTKETKAEYIVFIDKIIKVYLPSVEEDPELFNLVKTY
QLHRHSKTCRKYRNTPCRFYFGKFFSEKTIVSEPLPQELPHDEREAILAL
RKEVLTKVKTYINENLNPDKRNFFNPDGENYNPVPTINEVLAELDIPKED
YEYALSVSEDEDFHIYLKRDTNACFVNNYFTEGLKAWQANLDIQPVFNYY
KAATYMCAYLSKTEDEISHAMTQAVKDAFENGGDKYEQMKSVAHAYVSKR
EVSVQEAVYLSMPQLWLRKLYPGVTFANTNVPEKRFRMCLSEDDINELPE
DSTSIFKINMLDRYCDRPTDRVGPNKPIAEMCYAEFLRFYSVVYKECDEN
DCQPDELEDNLIESNHPSSNYPKIVKLCSIKGKLKCRKVPLVLRLHQPNR
NKYPEDYAHHLLMLYLPFFDENELLSQEHNSYTAKLLEPGVIERIERNRA
LIQPYAGLVDDALERYRNDLILNMNDFEQQENDETNAELQSRPNNNEESD
DENNNDTHVRASIPMESVLLPDNEVNARIRSLNYQQREVFDVVHKWGRDF
VKNLSSKVPKCIEPFHIFLTGGGGVGKSHLLTTIYHSLSNLLMYRGGEPT
KERILVLAPTGVAAINVNGTTIHSGLIIPTPDFLPLNASSKQNLQKKLAC
VEVIMIDEISMVSSRLFRNIDERLRKIFEVDKPFAGKSVLLCGDLFQLPP
VFKDFIYKPDCSTVHGIIGFELWRKFQIAELTEIMRQRDDIDFIDLLNQI
RLGEXV Run BLAST on NCBI transcript from alignment at sc0000606:130485..136669 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027114 ID=TCONS_00027114|Name=TCONS_00027114|organism=Clytia hemisphaerica|type=transcript|length=6185bp|location=Sequence derived from alignment at sc0000606:130485..136669 (Clytia hemisphaerica)
AGACATTCAGAGTTTTTGTGGCaagatcaacattttcaacagaACACAGG
AAGATAAAATTGTTGGTGATACTCAACAATACTTGACTGGTTAGGCTCAC
TTTTTTAAATAGAGTGTGAAAAGCTCTTTCTAAAAAATCAATAGCAAACA
TGTCACAAGAAGGACAAAACCCTCACACTATCCATATTAAATTAGATCCC
CAAGTAAAACAACCATGTGCATGTAACATTTCAGCGTTGAGATAAATTTG
ATTTGAGCAAGTCTATATATGAAGCCATATATTCGATGAGCTTTCTTTAC
ATTTCAACGAGTAAAAGATTTACATACACATGGTTGTGTAAAAAGGAGTT
GCAAATCTCAGCAGCAAAGTACATATTTCATTAATCATTGAATGTTACAg
tttatcaaaaataattttaattgtGGAGTTTTGCAACTCCTTCACCCCCC
ACCCTGTTCTATATCCCCATATAAAAATGTTTGTCAAGTAGGTCAAGTAG
GTCAAGTAGGTCAAGTAGGTTAATAGGTTTGAAAAACTAAGTGTTGTTTG
TTATAGTGAAACAAATTCCATCGTGGTCAGAAAAATAAATGCTCTTTAGA
AAACACTTGACTTCTTTTTTATCTGTAAAGCTGTTCTTTAAATAAACATG
GTCAAGAAGACCACCTGCTAGATGAGTTGGTTCATTCACTACCATTTCAT
ATGAAGAAAGTACTTCATTCAGGCATGTGTTTTCAGGATTTAATGCATCA
ATGTTGAAATCTCCCACAATAATGTCTATGTCATCATACATTGTAAGTTC
CAACAATTCTTCACGAAAACTGTTTCTTGAATAATCAGGTGGTTTGTACA
ATATTAAAAGTTTAATAGGTTGGTTACTGAAAGTTTCCTTTAAAAATTTG
ATACAAGTGTAACCTGCGGCCCTATCACACTCTAAAATTTGAACTGAAGA
ATTAAAACAACATGCAGTGTTTTGGAATCGATTGACAGAATTGTTATTGT
ATTCAATATTGAAATCACCTAGTATTTGGTCAACCTCATTTGTATCACTT
GAAGGTGACAATTGAGTTTCAGTAAGACATAGTAAGTCACTGCTCATGAG
AGTTTTACATTTTGTAATGTCAACTGCATGTTTCTTCAAAGAGCGGACAT
TAAGAAGTGAAATTTGAACATGTTTACTTGGAGTCAAAGCtgatgaaaaa
ctttcaacttGATGCAAAGGTCTATCTCTTCGTAAACGTTCATATTCAAG
TCCTGCCTCATTGTTTGCACGGATAGCTCTTCTATCATATTCACCGGTCA
AAAACAATCCATTGATGTTTGTAACTCTGGATAAGCTAACATACATTTGT
CCTTCATTGAAATATCTTTGTGATAATAAGTCAAAACTTACTACTGCTGA
TTGTAGTGTTAGTCCTTGGACTTTATGGCTTGTGCATGCATAGGATAAAA
CTAAAGGAAATTGAGTCCTtcggtttttcctttttctttttcttcttctt
ttcttttcttgtgTTAAAGGTTGCTTCTGCCCTTTCAATCAATATCCAAT
CATTTTCTCTGCAAACATGATCTATATTAGGTCCTTTCTTGCCTGCTAAG
ACATCATCAAGCTTAACATAGACACCTGATATGGTATTACTGGAATTATA
TTTAAATTCCATTACTGTTCCAACTTGGCCATTAACTAATCTATCAGTAA
TGTCAATATTCTTGCAAATTAAAATTCGGGCACCTACTTTCAATTCTAAT
ACACGGGCAAGACCACCTGTTTCTCTTGCTTTTGCAGTTTCAATAAATCT
GACATCTTGGTTTGTTAAATGCTTTGGAACTTCATCTTGTgcaaaaatca
aatgtttttcaGTTGGCAATTCATTGAGTTTTTGCATGTTATATACATCG
ACCGGTTTATTTTCTGCAAAAATATGAGTTACATCAGAGGGATAATCTGG
ACTGTCTTTTGCAATAAATctagattttaaaagttcttcctTTTCTTCGT
CTAGCTCGCCTAAACGAATTTGATTCAAGAGGTCAATAAAATCAATATCA
TCTCTCTGTCTCATGATCTCTGTCAATTCAGCGATTTGGAATTTACGCCA
TAATTCAAACCCAATTATACNAGCTCGCCTAAACGAATTTGATTCAAGAG
GTCAATAAAATCAATATCATCTCTCTGTCTCATGATCTCTGTCAATTCAG
CGATTTGAAATTTACGCCATAATTCAAAACCAATTATACCATGTACTGTG
GAGCAATCTGGTTTGtagataaaatctttaaaaactgGTGGAAGTTGAAA
TAAATCACCACAAAGCAGAACTGACTTTCCAGCAAAAGGTTTATCtactt
caaatattttgcgtaACCTTTCatcaatatttctaaacaaGCGGCTAGAC
ACCATGGAAATTTCATCAATCATAATGACTTCCACACATGCaagtttctt
ttgcaaattttgctttGATGATGCATTCAGTGGAAGGAAATCTGGAGTAG
GAATAATCAAACCGCTGTGTATGGTGGTTCCATTGACATTAATTGCTGCT
ACGCCAGTCGGTGCAAGaactaaaattctttcttttgtgGGTTCTCCTCC
TCTGTACATAAGAAGGTTTGACAAAGAATGATAGATTGTTGTGAGTAAAT
GGCTTTTTCCTACGCCTCCGCCACCAGTTAAGAAAATATGAAATGGCTCA
ATACATTTAGGCACTTTTGAAGAAAGGTTTTTAACGAAATCTCTTCCCCA
TTTGTGAACTACATCAAAAACTTCTCTTTGTTGGTAATTTAGAGATCTAA
TACGAGCATTTACTTCATTATCTGGGAGCAAAACTGATTCCATtggaatt
gaagctctgacatGAGTGTCATTGTTATTTTCATCATCTGATTCTTCATT
ATTGTTTGGTCTACTTTGAAGCTCTGCATTTGTTTCATCATTCTCCTGCT
GTTCAAAATCATTCATATTGAGAATCAAATCATTTCTGTACCTTTCTAAT
GCATCATCTACTAAACCAGCATAGGGTTGGATCAAAGCTCTGTTTCTCTC
AATCCTTTCAATGACACCTGGTTCCAATAGCTTTGCAGTATAACTATTGT
GTTCTTGGGACAATAATTCGTTCTCATCAAAGAAGGGTAAATACAGCATG
AGGAGGTGGTGGGCGTAATCTTCCGGGTACTTGTTTCTGTTAGGTTGATG
AAGGCGAAGTACAAGTGGAACTTTGCGGCATTTTAGTTTACCTTTTATTG
AACAAAGTTTGACAATCTTTGGGTAGTTGCTTGATGGGTGGTTTGATTCT
ATCAAATTATCTTCTAGTTCATCAGGTTGACAATCATTTTCATCACATTC
TTTGTAGACAACACTGTAGAATCTCAAGAATTCTGCATAACACATCTCAG
CAATAGGTTTATTAGGCCCAACTCTATCTGTTGGTCTATCACAGTACCTG
TCCAGCATATTAATTTTGAAGATTGAAGTACTATCCTCAGGCAACTCATT
AATGTCATCTTCACTAAGACACATTCTGAATCTTTTTTCTGGGACATTTG
TATTTGCAAAAGTTACACCTGGATAAAGCTTCCGAAGCCATAACTGTGGC
ATGCTTAGATAAACTGCTTCTTGCACTGACACTTCTCTTTTTGACACATA
GGCATGTGCaacagatttcatttgttcataTTTGTCACCACCATTTTCGA
AAGCATCTTTAACAGCTTGAGTCATAGCATGTGAAATTTCATCTTCGGTT
TTAGAAAGATATGCACACATGTAAGTTGCAGCTTTGTAATAATTAAAAAC
AGGTTGAATATCCAAATTTGCTTGCCAAGCTTTGAGACCTTCTGTAAAGT
AGTTATTCACAAAACATGCATTTGTGTCACGTTTTAAGTAAATGTGAAAA
TCCTCATCTTCAGATACAGAGAGAGCATATTCATAATCCTCCTTTGGAAT
ATCCAATTCAGCTAGGACTTCATTGATGGTGGGAACTGGATTGTAATTTT
CTCCATCagggttgaaaaagtttcttttatcAGGATTCAGGTTTTCATTG
ATGTAAGTCTTAACTTTTGTCAAAACTTCTTTTCGCAGGGCAAGTATAGC
TTCTCTTTCATCATGCGGTAGTTCTTGTGGCAAGGGTTCAGAGACTATTg
ttttctcagaaaaaaatttaccaaaataaaaTCTGCAGGGGGTGTTTCTA
TATTTACGGCAAGTTTTTGAATGGCGATGTAATTGGTATGTTTTTACAAG
GTTAAACAATTCAGGATCCTCTTCTACAGATGGTAAATAGACCTTGATTA
TTTTATCAATAAACACAATGTACTCAGCTTTTGTTTCCTTGGTCAATACT
GGTGCATTTAAAATCCATAGAAAGGAATGAATGTGAGGGCTTCCGCGTAC
TTGAAATTCTACTCGAATAGCGTAGAAAGTTGTTTTACCGAGTGGGCCGT
CCAAAACAATcgttttaaaaaatacttctaCTCTGTATTGAAAATGCCTT
GCTACAAGTACAGGGTTACTATTTAATAAATCACACCTTTCGTTGTAAGA
AAGATTCTCGATAAATTCATTGGTTACATTTTGACCCTTGAGTTTGTAAA
TTATGGAGATCAGTTCGTTCCATCTAAGGTCCGCACAACTCAAGGTCTGA
AAGAACGTTGGTGGTCCTAATTGTTTAACCATTGCTAAAACTTCTTGCTG
GAATTTTTTCCAATATGCTGGAGTTCCTTTAACAGTACTCATGAAGGCAA
AAGCTTTATCATTTGCAATGAATTGCCTTactgtttctttgaaattctga
CTTAACATACCAGCATTTAAATTTGAGCCAGCAACTTTTCTCATTGCAAC
ATTTATCTGATTGGTCAAAGATACTTGCTGAGTtacaaaattagcaaaaa
atatGTAGTCTGGGTCCGAAGCAAACTTTTGTGTGTAATTCAACAAACGC
TGGTTGAAGTATTTGGATGGACTTAGTTTAACATCACGTTCAACTTTGTA
ACCAAAGTTCCCTTTAGGAAATAAATGAGGATGCGCAAGcatttcacaat
tttcatcATTCAAGATTGAAATAGGCTTTTTACCCTGACCAGGCGCTAAC
gacaaaatttcattatctacTTCTGCATCAGAAGGAGTGTGAGGCATTAG
AGTAGTTTCGTTTGCATTTGAGCGATGGTCATCAAGTGGGTTGTCGGTTG
TCTCAAGCTCTTCAGAATCTGAAGCATTATTCTGTGGTTCATCAGGTTCA
CGATTATTGTCactaaaaacattttcatccGATAGGTTATTTTCATTAGA
ATTTGCTTCATCGTTAAGATCCGCAGCATTCTGTATCATGGTCTCATCAT
TCGAAATATTACTGACATCAACTTCTATGTCTTGATAAAGAGGGttgttt
tctttgaaataatttaATACACGCTGAATGAAATCAGGTCTGATTGGCTC
AAAAACAACATGTCCTTTGTATTCTAATTTCCTTTTGAGTTTAACAATGA
CTAATCCATTATCATTTGCTCTTCTTGGTAAAGTATTAGCAATATCTTCG
ACATCAATAGGTACATTACAAATAGATCCTTTGAGTTTGGGGAACTGACC
TTTTGGCATTattgcaatttttttgaataatattctacgagaaattaaaa
tcttttcaaGCCTGCgaagagtatgaaattcagcAGGTAATTCATCAAGG
CCAagtttatttttgacagattgaCATGGTAactcattttttttaagttt
gctaTGACACGTTTTGCAAATATATAGTTGGCCATCAAATGAAAAAACTT
CAGAATAATAAAGTTCTTGTGGTGTATCATACTTTTCAGGTGAATATTTA
ACAACTGTTTGTCGATAGAGACATCTATTACAGCAAACACAAATGTAAAA
AGGACCTTCGTAAATtagttttaaaaactttgacactagatcattttttt
tgtctttgtttgCAGTTGGATTATTTTTTTGgtagaatgatttttttctt
tcacctacACTATCTCTGTTATTTTGatgatagattttatttttttcatt
cacttttgctttgttttgagcACAATAGATTCtatttgtttcttttattt
tttctttgttctgggaacgataatttcttttgttttcatttattttctct
TTGCTTTGAGAATggtaatttcttttcttttcatg Coding sequence (CDS) from alignment at sc0000606:130485..136669 >TCONS_00027114 ID=TCONS_00027114|Name=TCONS_00027114|organism=Clytia hemisphaerica|type=CDS|length=4071bp|location=Sequence derived from alignment at sc0000606:130485..136669 (Clytia hemisphaerica)
TTATACNAGCTCGCCTAAACGAATTTGATTCAAGAGGTCAATAAAATCAA
TATCATCTCTCTGTCTCATGATCTCTGTCAATTCAGCGATTTGAAATTTA
CGCCATAATTCAAAACCAATTATACCATGTACTGTGGAGCAATCTGGTTT
GtagataaaatctttaaaaactgGTGGAAGTTGAAATAAATCACCACAAA
GCAGAACTGACTTTCCAGCAAAAGGTTTATCtacttcaaatattttgcgt
aACCTTTCatcaatatttctaaacaaGCGGCTAGACACCATGGAAATTTC
ATCAATCATAATGACTTCCACACATGCaagtttcttttgcaaattttgct
ttGATGATGCATTCAGTGGAAGGAAATCTGGAGTAGGAATAATCAAACCG
CTGTGTATGGTGGTTCCATTGACATTAATTGCTGCTACGCCAGTCGGTGC
AAGaactaaaattctttcttttgtgGGTTCTCCTCCTCTGTACATAAGAA
GGTTTGACAAAGAATGATAGATTGTTGTGAGTAAATGGCTTTTTCCTACG
CCTCCGCCACCAGTTAAGAAAATATGAAATGGCTCAATACATTTAGGCAC
TTTTGAAGAAAGGTTTTTAACGAAATCTCTTCCCCATTTGTGAACTACAT
CAAAAACTTCTCTTTGTTGGTAATTTAGAGATCTAATACGAGCATTTACT
TCATTATCTGGGAGCAAAACTGATTCCATtggaattgaagctctgacatG
AGTGTCATTGTTATTTTCATCATCTGATTCTTCATTATTGTTTGGTCTAC
TTTGAAGCTCTGCATTTGTTTCATCATTCTCCTGCTGTTCAAAATCATTC
ATATTGAGAATCAAATCATTTCTGTACCTTTCTAATGCATCATCTACTAA
ACCAGCATAGGGTTGGATCAAAGCTCTGTTTCTCTCAATCCTTTCAATGA
CACCTGGTTCCAATAGCTTTGCAGTATAACTATTGTGTTCTTGGGACAAT
AATTCGTTCTCATCAAAGAAGGGTAAATACAGCATGAGGAGGTGGTGGGC
GTAATCTTCCGGGTACTTGTTTCTGTTAGGTTGATGAAGGCGAAGTACAA
GTGGAACTTTGCGGCATTTTAGTTTACCTTTTATTGAACAAAGTTTGACA
ATCTTTGGGTAGTTGCTTGATGGGTGGTTTGATTCTATCAAATTATCTTC
TAGTTCATCAGGTTGACAATCATTTTCATCACATTCTTTGTAGACAACAC
TGTAGAATCTCAAGAATTCTGCATAACACATCTCAGCAATAGGTTTATTA
GGCCCAACTCTATCTGTTGGTCTATCACAGTACCTGTCCAGCATATTAAT
TTTGAAGATTGAAGTACTATCCTCAGGCAACTCATTAATGTCATCTTCAC
TAAGACACATTCTGAATCTTTTTTCTGGGACATTTGTATTTGCAAAAGTT
ACACCTGGATAAAGCTTCCGAAGCCATAACTGTGGCATGCTTAGATAAAC
TGCTTCTTGCACTGACACTTCTCTTTTTGACACATAGGCATGTGCaacag
atttcatttgttcataTTTGTCACCACCATTTTCGAAAGCATCTTTAACA
GCTTGAGTCATAGCATGTGAAATTTCATCTTCGGTTTTAGAAAGATATGC
ACACATGTAAGTTGCAGCTTTGTAATAATTAAAAACAGGTTGAATATCCA
AATTTGCTTGCCAAGCTTTGAGACCTTCTGTAAAGTAGTTATTCACAAAA
CATGCATTTGTGTCACGTTTTAAGTAAATGTGAAAATCCTCATCTTCAGA
TACAGAGAGAGCATATTCATAATCCTCCTTTGGAATATCCAATTCAGCTA
GGACTTCATTGATGGTGGGAACTGGATTGTAATTTTCTCCATCagggttg
aaaaagtttcttttatcAGGATTCAGGTTTTCATTGATGTAAGTCTTAAC
TTTTGTCAAAACTTCTTTTCGCAGGGCAAGTATAGCTTCTCTTTCATCAT
GCGGTAGTTCTTGTGGCAAGGGTTCAGAGACTATTgttttctcagaaaaa
aatttaccaaaataaaaTCTGCAGGGGGTGTTTCTATATTTACGGCAAGT
TTTTGAATGGCGATGTAATTGGTATGTTTTTACAAGGTTAAACAATTCAG
GATCCTCTTCTACAGATGGTAAATAGACCTTGATTATTTTATCAATAAAC
ACAATGTACTCAGCTTTTGTTTCCTTGGTCAATACTGGTGCATTTAAAAT
CCATAGAAAGGAATGAATGTGAGGGCTTCCGCGTACTTGAAATTCTACTC
GAATAGCGTAGAAAGTTGTTTTACCGAGTGGGCCGTCCAAAACAATcgtt
ttaaaaaatacttctaCTCTGTATTGAAAATGCCTTGCTACAAGTACAGG
GTTACTATTTAATAAATCACACCTTTCGTTGTAAGAAAGATTCTCGATAA
ATTCATTGGTTACATTTTGACCCTTGAGTTTGTAAATTATGGAGATCAGT
TCGTTCCATCTAAGGTCCGCACAACTCAAGGTCTGAAAGAACGTTGGTGG
TCCTAATTGTTTAACCATTGCTAAAACTTCTTGCTGGAATTTTTTCCAAT
ATGCTGGAGTTCCTTTAACAGTACTCATGAAGGCAAAAGCTTTATCATTT
GCAATGAATTGCCTTactgtttctttgaaattctgaCTTAACATACCAGC
ATTTAAATTTGAGCCAGCAACTTTTCTCATTGCAACATTTATCTGATTGG
TCAAAGATACTTGCTGAGTtacaaaattagcaaaaaatatGTAGTCTGGG
TCCGAAGCAAACTTTTGTGTGTAATTCAACAAACGCTGGTTGAAGTATTT
GGATGGACTTAGTTTAACATCACGTTCAACTTTGTAACCAAAGTTCCCTT
TAGGAAATAAATGAGGATGCGCAAGcatttcacaattttcatcATTCAAG
ATTGAAATAGGCTTTTTACCCTGACCAGGCGCTAACgacaaaatttcatt
atctacTTCTGCATCAGAAGGAGTGTGAGGCATTAGAGTAGTTTCGTTTG
CATTTGAGCGATGGTCATCAAGTGGGTTGTCGGTTGTCTCAAGCTCTTCA
GAATCTGAAGCATTATTCTGTGGTTCATCAGGTTCACGATTATTGTCact
aaaaacattttcatccGATAGGTTATTTTCATTAGAATTTGCTTCATCGT
TAAGATCCGCAGCATTCTGTATCATGGTCTCATCATTCGAAATATTACTG
ACATCAACTTCTATGTCTTGATAAAGAGGGttgttttctttgaaataatt
taATACACGCTGAATGAAATCAGGTCTGATTGGCTCAAAAACAACATGTC
CTTTGTATTCTAATTTCCTTTTGAGTTTAACAATGACTAATCCATTATCA
TTTGCTCTTCTTGGTAAAGTATTAGCAATATCTTCGACATCAATAGGTAC
ATTACAAATAGATCCTTTGAGTTTGGGGAACTGACCTTTTGGCATTattg
caatttttttgaataatattctacgagaaattaaaatcttttcaaGCCTG
CgaagagtatgaaattcagcAGGTAATTCATCAAGGCCAagtttattttt
gacagattgaCATGGTAactcattttttttaagtttgctaTGACACGTTT
TGCAAATATATAGTTGGCCATCAAATGAAAAAACTTCAGAATAATAAAGT
TCTTGTGGTGTATCATACTTTTCAGGTGAATATTTAACAACTGTTTGTCG
ATAGAGACATCTATTACAGCAAACACAAATGTAAAAAGGACCTTCGTAAA
TtagttttaaaaactttgacactagatcattttttttgtctttgtttgCA
GTTGGATTATTTTTTTGgtagaatgatttttttctttcacctacACTATC
TCTGTTATTTTGatgatagattttatttttttcattcacttttgctttgt
tttgagcACAATAGATTCtatttgtttcttttattttttctttgttctgg
gaacgataatttcttttgttttcatttattttctctTTGCTTTGAGAATg
gtaatttcttttcttttcatg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027114-exon-sc0000606-1491911889:130485..136669 | TCONS_00027114-exon-sc0000606-1491911889:130485..136669 | Clytia hemisphaerica | exon |
| TCONS_00027114-exon-sc0000606-1510915933:130485..136669 | TCONS_00027114-exon-sc0000606-1510915933:130485..136669 | Clytia hemisphaerica | exon |
| TCONS_00027114-exon-sc0000606-1575043694:130485..136669 | TCONS_00027114-exon-sc0000606-1575043694:130485..136669 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000606 | supercontig | sc0000606:130485..136669 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006281 | DNA repair |
| GO:0000723 | telomere maintenance |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003678 | DNA helicase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006281 |
DNA repair |
| biological_process |
GO:0000723 |
telomere maintenance |
| molecular_function |
GO:0003678 |
DNA helicase activity |
Blast
BLAST of TCONS_00027114 vs. Swiss-Prot (Human)
Match: PIF1 (ATP-dependent DNA helicase PIF1 OS=Homo sapiens GN=PIF1 PE=1 SV=2) HSP 1 Score: 91.2781 bits (225), Expect = 2.481e-18 Identity = 65/192 (33.85%), Postives = 96/192 (50.00%), Query Frame = 1
Query: 3499 IFLTGGGGVGKSHLLTTIYHSLSNLLMYRGGEPTKERILVLAPTGVAAINVNGTTIHSGLIIPT---PDFLPLNASSKQNLQKKLACVEVIMIDEISMVSSRLFRNIDERLRKIFEVDKPFAGKSVLLCGDLFQLPPVFKDFIYKPDCSTVHGIIGFELWRKF--QIAELTEIMRQRDDIDFIDLLNQIRLG 4059
IF TG G GKS+LL I SL PT + A TGVAA ++ GTT+H+ I + P + + + +++ + ++IDEISMV + LF ++ R + + +KPF G +++CGD QLPPV K C + W++ ELT++ RQ D FI LL +RLG
Sbjct: 224 IFFTGSAGTGKSYLLKRILGSLP---------PTG--TVATASTGVAACHIGGTTLHAFAGIGSGQAPLAQCVALAQRPGVRQGWLNCQRLVIDEISMVEADLFDKLEAVARAVRQQNKPFGGIQLIICGDFLQLPPVTKGSQPPRFC------FQSKSWKRCVPVTLELTKVWRQADQT-FISLLQAVRLG 397
The following BLAST results are available for this feature:
|
