TCONS_00027155 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027155
Unique NameTCONS_00027155
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length481

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027155 ID=TCONS_00027155|Name=TCONS_00027155|organism=Clytia hemisphaerica|type=transcript|length=481bp
gacgacactaAACTTGTCAATGAAGTAGAATCAATTGAAGATGCACTTAT
AATCCAGGAGGACATCGATCGACTACAGCAATGGTCAGATacgtggcttt
taaaatttcatcccgACAAATGTCATGTACTAACGTTAGGTAAGCGGAAT
ATAATTAAACATGTACATCAATACACACTCGGAGGAAATTTACTGAAACA
TGTACAATTCAAAAAGGATCTCGGAGTTATCTTTGACCAAAATCTCTCAT
TCGACCAACATATATCAAACCAAGTAAAAAAGGCAAACTCAATGGCTGGT
CTAATTAGAAGAACCTTCACGTATCTCACTCCTGAATTATTCTGTAAACT
TTACATAACATTTGTCAGGCCCCACGTAGAATATGCACAAGTCATTTGGT
CACCAAAACTGAAAAGACACAAAAAACTTATAGAAGGTGTTCAGCGGCGC
GCTACAAAAACCGTTGAAACATGAGGACGac
Run BLAST on NCBI

transcript from alignment at sc0000607:200777..201257

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027155 ID=TCONS_00027155|Name=TCONS_00027155|organism=Clytia hemisphaerica|type=transcript|length=481bp|location=Sequence derived from alignment at sc0000607:200777..201257 (Clytia hemisphaerica)
gtCGTCCTCATGTTTCAACGGTTTTTGTAGCGCGCCGCTGAACACCTTCT
ATAAGTTTTTTGTGTCTTTTCAGTTTTGGTGACCAAATGACTTGTGCATA
TTCTACGTGGGGCCTGACAAATGTTATGTAAAGTTTACAGAATAATTCAG
GAGTGAGATACGTGAAGGTTCTTCTAATTAGACCAGCCATTGAGTTTGCC
TTTTTTACTTGGTTTGATATATGTTGGTCGAATGAGAGATTTTGGTCAAA
GATAACTCCGAGATCCTTTTTGAATTGTACATGTTTCAGTAAATTTCCTC
CGAGTGTGTATTGATGTACATGTTTAATTATATTCCGCTTACCTAACGTT
AGTACATGACATTTGTcgggatgaaattttaaaagccacgtATCTGACCA
TTGCTGTAGTCGATCGATGTCCTCCTGGATTATAAGTGCATCTTCAATTG
ATTCTACTTCATTGACAAGTTtagtgtcgtc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015265XLOC_015265Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027155-exon-sc0000607-1491911889:200777..201257TCONS_00027155-exon-sc0000607-1491911889:200777..201257Clytia hemisphaericaexon
TCONS_00027155-exon-sc0000607-1510915933:200777..201257TCONS_00027155-exon-sc0000607-1510915933:200777..201257Clytia hemisphaericaexon
TCONS_00027155-exon-sc0000607-1575043694:200777..201257TCONS_00027155-exon-sc0000607-1575043694:200777..201257Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000607supercontigsc0000607:200777..201257 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.14253	0.751588	2.16894	3.00224	0.430374	0.718593	1.00615	0.726954	0.59716	0.764103	0.925022	0.508208	0.731908	1.50038	0.332303	1.06519	0	0.488555	0.191855	0.508774	0.858642	0.553608	0.380568	0.385203	1.82052	2.12968	11.7467	12.1764	1.93981	1.05579
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027155 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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