TCONS_00027156 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027156
Unique NameTCONS_00027156
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length658

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027156 ID=TCONS_00027156|Name=TCONS_00027156|organism=Clytia hemisphaerica|type=transcript|length=658bp
gaacgttcttatattttagcgataacacacaaaaacttttctactcaatc
gcatgttcaaactcgatactttaattagggacaccctgtagataTTTCTG
GGACGCTATAATTTTTCAATCTTCAAGAAGTGCACGAGTTCTTAATTTTA
TCGTTTCTGtttcatttgaaaccatttcAGTGTTATGTAATTACTGTGTA
CTGCGTCAAAGAGAGAAACTAGACATGCAGACACAAAAATATTCCTACTT
GTAGTCGTGTTCTGATTCAGatctttttttcgggacactctgtagtattt
tttcattgtACAATGATTGATGTCTAAGAACAGTTTCACCTTAGTTAGAT
CTCATCAGAGAgcgtgttattgtttttctaataCAATAAACTATATGTAC
AGGGTTTCCGCATAATTAGTGAACGAAAACAATCAATTTTGCCGCGTcag
caataaaaacaattgttttgccgagtcagcaaaaataatcaatattacta
atttctcagaatttcgtcgaaattttcaaaatggctgaagcagaaaaatt
cgaaaaactttgattagaaaattagaaactCTGACTTCGTTCTAATCTAA
ATGaatgtgaaaatgttttactgGCAATCAAATCATCTTCGTAACAGAAA
GATACAAA
Run BLAST on NCBI

transcript from alignment at sc0000607:207029..207686

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027156 ID=TCONS_00027156|Name=TCONS_00027156|organism=Clytia hemisphaerica|type=transcript|length=658bp|location=Sequence derived from alignment at sc0000607:207029..207686 (Clytia hemisphaerica)
TTTGTATCTTTCTGTTACGAAGATGATTTGATTGCcagtaaaacattttc
acattCATTTAGATTAGAACGAAGTCAGagtttctaattttctaatcaaa
gtttttcgaatttttctgcttcagccattttgaaaatttcgacgaaattc
tgagaaattagtaatattgattatttttgctgactcggcaaaacaattgt
ttttattgctgACGCGGCAAAATTGATTGTTTTCGTTCACTAATTATGCG
GAAACCCTGTACATATAGTTTATTGtattagaaaaacaataacacgcTCT
CTGATGAGATCTAACTAAGGTGAAACTGTTCTTAGACATCAATCATTGTa
caatgaaaaaatactacagagtgtcccgaaaaaaagatCTGAATCAGAAC
ACGACTACAAGTAGGAATATTTTTGTGTCTGCATGTCTAGTTTCTCTCTT
TGACGCAGTACACAGTAATTACATAACACTgaaatggtttcaaatgaaaC
AGAAACGATAAAATTAAGAACTCGTGCACTTCTTGAAGATTGAAAAATTA
TAGCGTCCCAGAAAtatctacagggtgtccctaattaaagtatcgagttt
gaacatgcgattgagtagaaaagtttttgtgtgttatcgctaaaatataa
gaacgttc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015266XLOC_015266Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027156-exon-sc0000607-1491911889:207029..207686TCONS_00027156-exon-sc0000607-1491911889:207029..207686Clytia hemisphaericaexon
TCONS_00027156-exon-sc0000607-1510915933:207029..207686TCONS_00027156-exon-sc0000607-1510915933:207029..207686Clytia hemisphaericaexon
TCONS_00027156-exon-sc0000607-1575043694:207029..207686TCONS_00027156-exon-sc0000607-1575043694:207029..207686Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000607supercontigsc0000607:207029..207686 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.228805	0.0924551	0	0.244804	0.107288	0.173929	0.20606	0.190266	0.0689713	0.248712	0.0804134	0.44336	0.230367	0.506618	0.185741	0.147973	0	0.130882	0.252695	0.533613	1.14001	0.720152	0.668121	0.876192	0.424834	0	1.14987	1.04613	0.0932022	0.567663
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027156 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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