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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027165 ID=TCONS_00027165|Name=TCONS_00027165|organism=Clytia hemisphaerica|type=transcript|length=369bp
CGAAAGATCTACCGAGAGATCGAAAACAaacaagaaagaaaatcaagaat
ACTAGCAAGTTAGTGAAAATGAGTACGAGAAATCTTCTATTGCTTGTTTT
GGTTGGTACCATTCTATGCGTGAACACTTCAGCTCAAGAATGTGGCTTTC
CAAAGAAACAAACGATGGACCGAATCAGCGCCCGAATTATCGGTGGGGAA
GAAAGCAGACAGGGCGCCTGGCCTTGGATGgCTGGCATCACAGAAATTAA
ACGGTCAATTAATGCTCGGCCCATTTGTGGAGGATTATTACTCAATGAGA
AATGGGTTCTCAGTACCGCAAGCTGCTTTTTGGTAGAAGAGCTTGGAAAT
GAAAGAGTTACGTTAGGTA Run BLAST on NCBI protein sequence of TCONS_00027165-protein >TCONS_00027165-protein ID=TCONS_00027165-protein|Name=TCONS_00027165-protein|organism=Clytia hemisphaerica|type=polypeptide|length=122bp
KDLPRDRKQTRKKIKNTSKLVKMSTRNLLLLVLVGTILCVNTSAQECGFP
KKQTMDRISARIIGGEESRQGAWPWMAGITEIKRSINARPICGGLLLNEK
WVLSTASCFLVEELGNERVTLG Run BLAST on NCBI transcript from alignment at sc0000608:4660..5656- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027165 ID=TCONS_00027165|Name=TCONS_00027165|organism=Clytia hemisphaerica|type=transcript|length=997bp|location=Sequence derived from alignment at sc0000608:4660..5656- (Clytia hemisphaerica)
CGAAAGATCTACCGAGAGATCGAAAACAAACAAGAAAGAAAATCAAGAAT
ACTAGCAAGTTAGTGAAAATGAGTACGAGAAATCTTCTATTGCTTGTTTT
GGTTGGTACCATTCTATGCGTGAACACTTCAGGTAAGACGTCTAAATACA
CCCCTGTCTCAAAGACTAAAAATTGTTTGGCCAGTGTGATGATGATTGTA
AGGGGAAGAAAGCTACAGGATGGCAAATCTATTACTTAGATGGTCCATCC
GTCTACGAACTTTCTTTCGACCTAGAGCCTGACAGAACCTAGCCTGAAAC
TTGATACCAACTCTGTCTCTATCACTATCATCATAAACTTTCAAATCCTT
CCTTTCTCTTCAAAATTAGCTCAAGAATGTGGCTTTCCAAAGAAACAAAC
GATGGACCGAATCAGCGCCCGAATTATCGGTGGGGAAGAAAGCAGACAGG
GCGCCTGGCCTTGGATGGTAAGCACACGAATTTTTTTTAATAACTTAAAC
AGGAAAAACATTTAAGAATCAAGGCGTTAGAGTGTTCAGACTAGTTTTTT
CTGATCACTTCAGTTGAAAATGCCTCATAAACCTTACCCCCTAACTCGAA
ATTTCCCTCACTCGAACAAATTTGTGTTTACCGTGCTACAGGTACAGTAC
AGGTTTAATTCTCCCTAGAATTTTCGATTCTGAAAAAATATTAAAATATC
AAAAATGTTAAAATATCCAGAATTCTCAATATATTTTAAATTCGATTGCA
TGTTTGCATAGTTCTAAGTAGAAAGCGCACTCAAAATAAGTTTATAGACG
TTTTTTCAAAAGTTAACTTAACTGCAGTGTGATTTTTTTGAATTTTTTAA
TATTTCAGGCTGGCATCACAGAAATTAAACGGTCAATTAATGCTCGGCCC
ATTTGTGGAGGATTATTACTCAATGAGAAATGGGTTCTCAGTACCGCAAG
CTGCTTTTTGGTAGAAGAGCTTGGAAATGAAAGAGTTACGTTAGGTA Coding sequence (CDS) from alignment at sc0000608:4660..5656- >TCONS_00027165 ID=TCONS_00027165|Name=TCONS_00027165|organism=Clytia hemisphaerica|type=CDS|length=1098bp|location=Sequence derived from alignment at sc0000608:4660..5656- (Clytia hemisphaerica)
GCTGGCATCACAGAAATTAAACGGTCAATTAATGCTCGGCCCATTTGTGG
AGGATTATTACTCAATGAGAAATGGGTTCTCAGTACCGCAAGCTGCTTTT
TGGTAGAAGAGCTTGGAAATGAAAGAGTTACGTTAGGTCTCAAGAATGTG
GCTTTCCAAAGAAACAAACGATGGACCGAATCAGCGCCCGAATTATCGGT
GGGGAAGAAAGCAGACAGGGCGCCTGGCCTTGGATGAAAGATCTACCGAG
AGATCGAAAACAAACAAGAAAGAAAATCAAGAATACTAGCAAGTTAGTGA
AAATGAGTACGAGAAATCTTCTATTGCTTGTTTTGGTTGGTACCATTCTA
TGCGTGAACACTTCAGGCTGGCATCACAGAAATTAAACGGTCAATTAATG
CTCGGCCCATTTGTGGAGGATTATTACTCAATGAGAAATGGGTTCTCAGT
ACCGCAAGCTGCTTTTTGGTAGAAGAGCTTGGAAATGAAAGAGTTACGTT
AGGTCTCAAGAATGTGGCTTTCCAAAGAAACAAACGATGGACCGAATCAG
CGCCCGAATTATCGGTGGGGAAGAAAGCAGACAGGGCGCCTGGCCTTGGA
TGAAAGATCTACCGAGAGATCGAAAACAAACAAGAAAGAAAATCAAGAAT
ACTAGCAAGTTAGTGAAAATGAGTACGAGAAATCTTCTATTGCTTGTTTT
GGTTGGTACCATTCTATGCGTGAACACTTCAGGCTGGCATCACAGAAATT
AAACGGTCAATTAATGCTCGGCCCATTTGTGGAGGATTATTACTCAATGA
GAAATGGGTTCTCAGTACCGCAAGCTGCTTTTTGGTAGAAGAGCTTGGAA
ATGAAAGAGTTACGTTAGGTCTCAAGAATGTGGCTTTCCAAAGAAACAAA
CGATGGACCGAATCAGCGCCCGAATTATCGGTGGGGAAGAAAGCAGACAG
GGCGCCTGGCCTTGGATGAAAGATCTACCGAGAGATCGAAAACAAACAAG
AAAGAAAATCAAGAATACTAGCAAGTTAGTGAAAATGAGTACGAGAAATC
TTCTATTGCTTGTTTTGGTTGGTACCATTCTATGCGTGAACACTTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027165-exon-sc0000608-1575043694:5525..5656 | TCONS_00027165-exon-sc0000608-1575043694:5525..5656 | Clytia hemisphaerica | exon |
| TCONS_00027165-exon-sc0000608-1575043694:5190..5287 | TCONS_00027165-exon-sc0000608-1575043694:5190..5287 | Clytia hemisphaerica | exon |
| TCONS_00027165-exon-sc0000608-1575043694:4660..4798 | TCONS_00027165-exon-sc0000608-1575043694:4660..4798 | Clytia hemisphaerica | exon |
| TCONS_00027165-exon-sc0000608-1510915933:5525..5656 | TCONS_00027165-exon-sc0000608-1510915933:5525..5656 | Clytia hemisphaerica | exon |
| TCONS_00027165-exon-sc0000608-1510915933:5190..5287 | TCONS_00027165-exon-sc0000608-1510915933:5190..5287 | Clytia hemisphaerica | exon |
| TCONS_00027165-exon-sc0000608-1510915933:4660..4798 | TCONS_00027165-exon-sc0000608-1510915933:4660..4798 | Clytia hemisphaerica | exon |
| TCONS_00027165-exon-sc0000608-1491911889:5525..5656 | TCONS_00027165-exon-sc0000608-1491911889:5525..5656 | Clytia hemisphaerica | exon |
| TCONS_00027165-exon-sc0000608-1491911889:5190..5287 | TCONS_00027165-exon-sc0000608-1491911889:5190..5287 | Clytia hemisphaerica | exon |
| TCONS_00027165-exon-sc0000608-1491911889:4660..4798 | TCONS_00027165-exon-sc0000608-1491911889:4660..4798 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000608 | supercontig | sc0000608:4660..5656 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004252 | serine-type endopeptidase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006508 | proteolysis |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006508 |
proteolysis |
| molecular_function |
GO:0004252 |
serine-type endopeptidase activity |
Blast
The following BLAST results are available for this feature:
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