TCONS_00027171 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027171
Unique NameTCONS_00027171
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length692

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027171 ID=TCONS_00027171|Name=TCONS_00027171|organism=Clytia hemisphaerica|type=transcript|length=692bp
atcaagcaaaaatagATTCTTGATAACCTTTTTGAATAAAAGGGAGCACG
GACTCAAGAAAGAAGTTACAACGAAGATGGATTTCACTTTGGCCACTACC
AAGTGGAGATTTGaaactttaattttttggatttgtttCCTTCTACGTTA
CGTTCATGCTCGAGGTGCCAGTTTGAAGTGTTATTCATGTGTAGCGGACA
CCATTGAAGATTGCAATCGGACACAGTTTCTGGAATACTGTCCATACACT
ATTCTTTACCCATCATGCTTCACGGTCACTTACGAAAAGGTGATTCAAGC
AGATGTGGAGGGAGAACAAAGTATACGAAAAGTTGTTCAAAAGAAATGCG
GATCACAGTTGAATGGATGCCATTATGAATGTGGTCTTCACAAAATGTTA
GGTGCAAGAAAGTGTTATGCGACTTGTTGCCATAAGAACGAATGCAATAT
CAATACAGGGCGCCAGATTCGTATTTATAACAACCAATGGAATCATTCCA
GAGTATCACGCGCCGATTTGCCAATAATTCTTGTTGTTGCAGCTTGTAGT
ATATTTCTtaataattatttatttatataatagtttcaaaaatctttgtt
ttatatatttgtacttttccttcaaaatttgggTACTTAATTTTGGTCCA
AAATAAAACAGTTCCACATACAATTTTACCTTGCTAGcatgg
Run BLAST on NCBI

protein sequence of TCONS_00027171-protein

>TCONS_00027171-protein ID=TCONS_00027171-protein|Name=TCONS_00027171-protein|organism=Clytia hemisphaerica|type=polypeptide|length=192bp
SSKNRFLITFLNKREHGLKKEVTTKMDFTLATTKWRFETLIFWICFLLRY
VHARGASLKCYSCVADTIEDCNRTQFLEYCPYTILYPSCFTVTYEKVIQA
DVEGEQSIRKVVQKKCGSQLNGCHYECGLHKMLGARKCYATCCHKNECNI
NTGRQIRIYNNQWNHSRVSRADLPIILVVAACSIFLNNYLFI
Run BLAST on NCBI

transcript from alignment at sc0000608:79543..82730-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027171 ID=TCONS_00027171|Name=TCONS_00027171|organism=Clytia hemisphaerica|type=transcript|length=3188bp|location=Sequence derived from alignment at sc0000608:79543..82730- (Clytia hemisphaerica)
ATCAAGCAAAAATAGATTCTTGATAACCTTTTTGAATAAAAGGGAGCACG
GACTCAAGAAAGAAGTTACAACGAAGATGGATTTCACTTTGGCCACTACC
AAGTGGAGATTTGAAACTTTAATTTTTTGGATTTGTTTCCTTCTACGTTA
CGTTCATGCTCGAGGTATGTGTTCAAATTCCCTTTTCCTGTTTTCTTATC
ACTACACGATCTTTCTATAAGAACAAACTATATAAGAACATGAGTCATTG
ATGGCCAAAATATTCAGAACAAATTAGGAACATTCTAAAACGCCCGATTT
TTAGGAAAATGGAAAAAATACTCACAAAATAGCAAATAAAACGTGTAAGC
TTTGATACCACATGGTCGCCCATTCCAGATCCGAAAAATTGAATATGTGA
GCTGCTGTGTTTGTACTACAGAAAATGGCAAAACTTTCTCATTCCCAGCT
AACCTTTCCTTTTGCGAGACTCTAGGTAAATGAAAAAGTAACTTAAATTA
TATGTTAGACAGTTAGTTCTCAAAGCCGTAAAGTACTGTCACTAGCCGTA
CGTAACAGAAGAAAGAAGAAGGCAACATCGGAAATATCCCACAGAAATAC
ACCAGGAATGCTTCGCCGGGAATTACCTTAAGTGGATAAATTTTGGCGTG
GATTTAATTTGGCGATCGGCCATAATACAATTTTTGGCGGGGATTTAATT
TGGCGATCGATCAATTTCGTAAAATTTGGCCAGGATTTAATTTGGCGAAT
TGGAAATTTTTGTCACACTGAAATGGGTGAAAATTACTCAAAAATATACT
AAAAAGTTGCGATTTTCTCTTTTTGTTAAAGTTGGCGGGGATTTAATTTG
GCGAATTGCCGAATTTGGGAATTTTGGCGGGGATTTAATTTGGCGAATTT
TGCCAAAATTCGCCAAATTCGCCAAATGTAATCCCCGCCAAAATTTATCC
ACTTAAGGTAGAAACTTTAGCTATCATGCGGTAGTCTTGTGGCCCCAGTC
CTTTTCAAACACCTGAATGAACTAAGTCAAAATTTAACCCATGTGTTCTT
TGTTACCACACAACAACAGGTGCCAGTTTGAAGTGTTATTCATGTGTAGC
GGACACCATTGAAGATTGCAATCGGACACAGTTTCTGGAATACTGTCCAT
ACACTATTCTTTACCCATCATGCTTCACGGTCACTTACGAAAAGGTTTGT
GTTTTTTACCCAGTTGACACACAATGTTGTTTCAACGTTCATCTGACGTT
AAATGGACGTTGTGAACATTAAATTGACGTTGAAACAACGTTGTGTGTCA
GCTGGATAACAATGTCAAAAATAGTTCACTGAATTAATTCACCTAAAAAT
TCCAACAGCAATCAGGGAGCCTAAGCTTATCTATTTGAAAGTTAAATTTA
AGCCTAAAAATATTCCAGGCAGGCTCCTGATTAAAATTATTTTATCAACA
AGTTTAGTTTAAGGATAGAAATACCCTTTTTCTAAAACTCTCTTTTCGAC
CGTAGTCGCGTGCCACTTTATTATTTGATTTACCACCCTAAACTCGATCC
AATCCTTTTTTTACACTTTTTCTATTGTCTTTAGGTGCGAAAAAAAGACA
GGGATAGTTTTAGGGTGGTAAAACGGACAAAAAAATACCCGCGCAGTAAT
TGGCAGCTACGGTGGTCTATGATGCATAGACCTTATTGTAGCCTGCAACA
AAACTTTTGAAGAATTTTGATGATGCGTTGTAGAGTTTATAATGCAGGTT
TGTTTTCATGACCTTAATATTTTTTCAATTTTCTCTTACAATCAGGTGAT
TCAAGCAGATGTGGAGGGAGAACAAAGTATACGAAAAGTTGTTCAAAAGA
AATGCGGATCACAGTTGAATGGATGCCATTATGAATGTGGTCTTCACAAA
ATGTTAGGTGCAAGAAAGTGTTATGTAAGTGTCAGGAATCTTTATACACC
CCTTTGTCACGGACCCGATGGGAACTCTTTCACACTATGAAGATTAAATT
TTTATCAAAATACCAATGGGGATAGAAATTCTACTGTTCTCAGATACTTA
AAAAAACAAGCAGGGTTGATTTTGCAGAACAATTTGTTCCATTGAATTTC
AGATGGGGAAGAAAATCGTAAATATTTTCCGTTGGGACTGGAATTGTAGG
GTTCTTTTCTCACCGAAAATGAAACTTTGGCTAAATTTTCCAGTGGAGTG
AGGGTTCAAGCGGTCCTTTAACGCAGGGGTGTCTTTATGAATCCTAATTA
CCACTGTTTATATTATATTGACCAAAATGAAACCTGAAACCAAGTCAAAT
TAAATTTAAGGCACTTTGAAGTGCTTATCTATCAAGGATGATATTGGCTG
GAATTAGCATAGCGGAGTTTTCTTTAGAAAGGACGGGACATCCCTGGGGG
AGTACTAGGGTTGTGAGCTGAGGGGGGGGGGTGCCGCCCGACTTTCGACC
CTTACCAGGACTAAAAAGGAGAAAACAAACGAAAATGTTGTGAATTTTAC
GACCCTTATCGGGACAAATTTGACCAATTTTGACCAAATTCCGATCTTTC
CGGGGGTAAAAAGTTTAAATTTTCTCCAAACCTTAGCGGGACTGAAATTT
GATTTTCTGATTTTTCCGACCCTTAGTGGGACTTTGGAGATCCAAAAAAG
GTACTCTTAAACCCCCCCCCCCGAGTTTAAAGCCCTCAAGTGCTAAGGAT
GATATGTTTGGATGCTTAATGAAGCCGTTTTTCACCTGAAGTGTACGAAC
AGCGCGTTTTTCACACAAAAGTCAGATTGAAAGTAAAATCTATCGCCAGG
ATTTTGAAAAATATGCAGCGAAAAAACCAAGAAGGCGTCGGATTCAATCT
GTCATTCCTATCATTTGACCTCTGATTATTCTGAAATTTTATCTTTCCCA
TCTTTCTCACATAGGCGACTTGTTGCCATAAGAACGAATGCAATATCAAT
ACAGGGCGCCAGATTCGTATTTATAACAACCAATGGAATCATTCCAGAGT
ATCACGCGCCGATTTGCCAATAATTCTTGTTGTTGCAGCTTGTAGTATAT
TTCTTAATAATTATTTATTTATATAATAGTTTCAAAAATCTTTGTTTTAT
ATATTTGTACTTTTCCTTCAAAATTTGGGTACTTAATTTTGGTCCAAAAT
AAAACAGTTCCACATACAATTTTACCTTGCTAGCATGG

Coding sequence (CDS) from alignment at sc0000608:79543..82730-

>TCONS_00027171 ID=TCONS_00027171|Name=TCONS_00027171|organism=Clytia hemisphaerica|type=CDS|length=2316bp|location=Sequence derived from alignment at sc0000608:79543..82730- (Clytia hemisphaerica)
GCGACTTGTTGCCATAAGAACGAATGCAATATCAATACAGGGCGCCAGAT
TCGTATTTATAACAACCAATGGAATCATTCCAGAGTATCACGCGCCGATT
TGCCAATAATTCTTGTTGTTGCAGCTTGTAGTATATTTCTTAATAATTAT
TTATTTATATAAGTGATTCAAGCAGATGTGGAGGGAGAACAAAGTATACG
AAAAGTTGTTCAAAAGAAATGCGGATCACAGTTGAATGGATGCCATTATG
AATGTGGTCTTCACAAAATGTTAGGTGCAAGAAAGTGTTATGTGCCAGTT
TGAAGTGTTATTCATGTGTAGCGGACACCATTGAAGATTGCAATCGGACA
CAGTTTCTGGAATACTGTCCATACACTATTCTTTACCCATCATGCTTCAC
GGTCACTTACGAAAAGTCAAGCAAAAATAGATTCTTGATAACCTTTTTGA
ATAAAAGGGAGCACGGACTCAAGAAAGAAGTTACAACGAAGATGGATTTC
ACTTTGGCCACTACCAAGTGGAGATTTGAAACTTTAATTTTTTGGATTTG
TTTCCTTCTACGTTACGTTCATGCTCGAGGCGACTTGTTGCCATAAGAAC
GAATGCAATATCAATACAGGGCGCCAGATTCGTATTTATAACAACCAATG
GAATCATTCCAGAGTATCACGCGCCGATTTGCCAATAATTCTTGTTGTTG
CAGCTTGTAGTATATTTCTTAATAATTATTTATTTATATAAGTGATTCAA
GCAGATGTGGAGGGAGAACAAAGTATACGAAAAGTTGTTCAAAAGAAATG
CGGATCACAGTTGAATGGATGCCATTATGAATGTGGTCTTCACAAAATGT
TAGGTGCAAGAAAGTGTTATGTGCCAGTTTGAAGTGTTATTCATGTGTAG
CGGACACCATTGAAGATTGCAATCGGACACAGTTTCTGGAATACTGTCCA
TACACTATTCTTTACCCATCATGCTTCACGGTCACTTACGAAAAGTCAAG
CAAAAATAGATTCTTGATAACCTTTTTGAATAAAAGGGAGCACGGACTCA
AGAAAGAAGTTACAACGAAGATGGATTTCACTTTGGCCACTACCAAGTGG
AGATTTGAAACTTTAATTTTTTGGATTTGTTTCCTTCTACGTTACGTTCA
TGCTCGAGGCGACTTGTTGCCATAAGAACGAATGCAATATCAATACAGGG
CGCCAGATTCGTATTTATAACAACCAATGGAATCATTCCAGAGTATCACG
CGCCGATTTGCCAATAATTCTTGTTGTTGCAGCTTGTAGTATATTTCTTA
ATAATTATTTATTTATATAAGTGATTCAAGCAGATGTGGAGGGAGAACAA
AGTATACGAAAAGTTGTTCAAAAGAAATGCGGATCACAGTTGAATGGATG
CCATTATGAATGTGGTCTTCACAAAATGTTAGGTGCAAGAAAGTGTTATG
TGCCAGTTTGAAGTGTTATTCATGTGTAGCGGACACCATTGAAGATTGCA
ATCGGACACAGTTTCTGGAATACTGTCCATACACTATTCTTTACCCATCA
TGCTTCACGGTCACTTACGAAAAGTCAAGCAAAAATAGATTCTTGATAAC
CTTTTTGAATAAAAGGGAGCACGGACTCAAGAAAGAAGTTACAACGAAGA
TGGATTTCACTTTGGCCACTACCAAGTGGAGATTTGAAACTTTAATTTTT
TGGATTTGTTTCCTTCTACGTTACGTTCATGCTCGAGGCGACTTGTTGCC
ATAAGAACGAATGCAATATCAATACAGGGCGCCAGATTCGTATTTATAAC
AACCAATGGAATCATTCCAGAGTATCACGCGCCGATTTGCCAATAATTCT
TGTTGTTGCAGCTTGTAGTATATTTCTTAATAATTATTTATTTATATAAG
TGATTCAAGCAGATGTGGAGGGAGAACAAAGTATACGAAAAGTTGTTCAA
AAGAAATGCGGATCACAGTTGAATGGATGCCATTATGAATGTGGTCTTCA
CAAAATGTTAGGTGCAAGAAAGTGTTATGTGCCAGTTTGAAGTGTTATTC
ATGTGTAGCGGACACCATTGAAGATTGCAATCGGACACAGTTTCTGGAAT
ACTGTCCATACACTATTCTTTACCCATCATGCTTCACGGTCACTTACGAA
AAGTCAAGCAAAAATAGATTCTTGATAACCTTTTTGAATAAAAGGGAGCA
CGGACTCAAGAAAGAAGTTACAACGAAGATGGATTTCACTTTGGCCACTA
CCAAGTGGAGATTTGAAACTTTAATTTTTTGGATTTGTTTCCTTCTACGT
TACGTTCATGCTCGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015277XLOC_015277Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027171-exon-sc0000608-1575043694:82567..82730TCONS_00027171-exon-sc0000608-1575043694:82567..82730Clytia hemisphaericaexon
TCONS_00027171-exon-sc0000608-1575043694:81537..81661TCONS_00027171-exon-sc0000608-1575043694:81537..81661Clytia hemisphaericaexon
TCONS_00027171-exon-sc0000608-1575043694:80807..80935TCONS_00027171-exon-sc0000608-1575043694:80807..80935Clytia hemisphaericaexon
TCONS_00027171-exon-sc0000608-1575043694:79543..79816TCONS_00027171-exon-sc0000608-1575043694:79543..79816Clytia hemisphaericaexon
TCONS_00027171-exon-sc0000608-1510915933:82567..82730TCONS_00027171-exon-sc0000608-1510915933:82567..82730Clytia hemisphaericaexon
TCONS_00027171-exon-sc0000608-1510915933:81537..81661TCONS_00027171-exon-sc0000608-1510915933:81537..81661Clytia hemisphaericaexon
TCONS_00027171-exon-sc0000608-1510915933:80807..80935TCONS_00027171-exon-sc0000608-1510915933:80807..80935Clytia hemisphaericaexon
TCONS_00027171-exon-sc0000608-1510915933:79543..79816TCONS_00027171-exon-sc0000608-1510915933:79543..79816Clytia hemisphaericaexon
TCONS_00027171-exon-sc0000608-1491911889:82567..82730TCONS_00027171-exon-sc0000608-1491911889:82567..82730Clytia hemisphaericaexon
TCONS_00027171-exon-sc0000608-1491911889:81537..81661TCONS_00027171-exon-sc0000608-1491911889:81537..81661Clytia hemisphaericaexon
TCONS_00027171-exon-sc0000608-1491911889:80807..80935TCONS_00027171-exon-sc0000608-1491911889:80807..80935Clytia hemisphaericaexon
TCONS_00027171-exon-sc0000608-1491911889:79543..79816TCONS_00027171-exon-sc0000608-1491911889:79543..79816Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027171-proteinTCONS_00027171-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000608supercontigsc0000608:79543..82730 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.807982	0.859538	0.415836	0.976392	1.48583	0.861023	0.849917	0.530455	1.29984	1.61007	1.19068	0.538111	0.195405	0.253662	0.333672	0.13428	0.66169	1.13035	0.234246	0.245122	1.56241	1.66273	2.27393	3.36899	2.9968	2.18189	0.402874	0.107489	0.407635	0.249189
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027171 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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