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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027213 ID=TCONS_00027213|Name=TCONS_00027213|organism=Clytia hemisphaerica|type=transcript|length=6285bpRun BLAST on NCBI transcript from alignment at sc0000609:150070..200651- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00027213 ID=TCONS_00027213|Name=TCONS_00027213|organism=Clytia hemisphaerica|type=transcript|length=50582bp|location=Sequence derived from alignment at sc0000609:150070..200651- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00027213 vs. Swiss-Prot (Human)
Match: HD (Huntingtin OS=Homo sapiens GN=HTT PE=1 SV=2) HSP 1 Score: 328.176 bits (840), Expect = 6.004e-90 Identity = 191/435 (43.91%), Postives = 264/435 (60.69%), Query Frame = 1
Query: 3031 KNERLGNFVNLPQFMKLHEILKGAFKNYQ-TSTVFHALEKFNGFVRGILEAFGLLMELATFNELGTHAEEFLDYLKATARVEEEITFLAVQQLLKGLFGTNAASDPEMYKLPESTEQLTSIHSDQITQQPSAKQQNTAYASPIDFKNAYEAFFSHPYSQLSDSLHMVPVADPAIGSF---ERGSKALNMFKSFKKTLIPQGRPIVKVSKERV--ASIQSYIRLFEPLVIHALKSYTTTSSVTLQCQAIHLLDQLIRLRVNYSLLDSDQVFIGFVLKQFEFITSGQISSPETFIPTVFQFLVLLSYECYQPKFTQAKAIIGMPRIMRLCDEVMACEQPAVTHAIPALKPIVQDLFTSQSQTRPDSAKDLDTQREVIVSMLLRVVQYPEVLQMLTTVLNGS-KTDDEKWKRLSRVIIDTLLPSLSKLEKNPNLHEAL 4314
K+ LG+F +LP ++KLH++LK NY+ T + ++ EKF GF+R L+ ++ELAT ++G EE L YLK+ E + + VQQLLK LFGTN AS Q + S+ Q A++ ++ P Y F PY+ + +L AD ++ + E+ + F +K + V+K R +I ++IRLFEPLVI ALK YTTT+ V LQ Q + LL QL++LRVNY LLDSDQVFIGFVLKQFE+I GQ E IP +F FLVLLSYE Y +K IIG+P+I++LCD +MA + AVTHAIPAL+PIV DLF + + D+ K+L+TQ+EV+VSMLLR++QY +VL+M VL K +++KWKRLSR I D +LP L+K + + + HEAL
Sbjct: 1223 KSSSLGSFYHLPSYLKLHDVLKATHANYKVTLDLQNSTEKFGGFLRSALDVLSQILELATLQDIGKCVEEILGYLKSCFSREPMMATVCVQQLLKTLFGTNLAS------------QFDGLSSNPSKSQGRAQRLGSSSVRP----GLYHYCFMAPYTHFTQAL-----ADASLRNMVQAEQENDTSGWFDVLQKVSTQLKTNLTSVTKNRADKNAIHNHIRLFEPLVIKALKQYTTTTCVQLQKQVLDLLAQLVQLRVNYCLLDSDQVFIGFVLKQFEYIEVGQFRESEAIIPNIFFFLVLLSYERY-----HSKQIIGIPKIIQLCDGIMASGRKAVTHAIPALQPIVHDLFVLRGTNKADAGKELETQKEVVVSMLLRLIQYHQVLEMFILVLQQCHKENEDKWKRLSRQIADIILPMLAKQQMHIDSHEAL 1631 HSP 2 Score: 225.713 bits (574), Expect = 9.178e-59 Identity = 175/663 (26.40%), Postives = 292/663 (44.04%), Query Frame = 2
Query: 1184 PLLNCVRLL-CSFLLSGQPGKVLPDSSTRVSVKSLALHCIGSALNLFPEALLARVLPKELQT-EGSSRQLVRDVFVLKNHEDPQIKGSVSAVIGHFIQAAM---RFSVGQFTHWNSKMSAKYETEPIDLMDALDIIGDLFKDESAVTIKQNCHAARHCILGLLGSDHNILAYDLVQQMIGLYDCSYWLVKTEILDTFHQLDYKLLQIIEPHWITYKHLSTLNKKYINIQQQVV-HVLTHLLGDEDIRVRQAAANSIAKTIPRLFYSNTTPQDLLMCAALIDNT--------NDQSTNDKFEM--------------------ISCNLAAVLRKIFELQITSVSKFMIHGCIHCFYILSEVYPPSKYP*AWEILPSGASSSKHKKVNENQQAIRDRTFTGXXXXXXXXXXXXXXRKLDFAATEDGRSTC--GILSTTLDIMSAGWMMLDLQAHQDALKLCVHMLCGACLPFLKKKPSEAMETSTSQNTADVGLTDSWSALQDQSLQHFAKQIFLHVTRVLHVLMHVIEETNP----------LANVKTISSFVNQNKDKTPGGSGNTPSASQNVSATPSPNATPQTTTSPRKFALPRAMQRNKQEPTPQPDTSKLVEGGNTPSGDGKQTPSNQGTPQPSNTDKNERLGNFVNLPQFMKLHEIXR 3034
PL++CVRLL SFLL+G ++PD RVSVK+LAL C+G+A+ L PE+ +++ L T E Q V D+ +H DPQ++G+ + + G I + + RF VG + ++ L D + ++ KDES+VT K C A R+C++ L S ++ L L+ ++ L + SYWLV+TE+L+T ++D++L+ +E + + +Q++V+ +V+ HLLGDED RVR AA S+ + +P+LFY Q + A D + ++ F + + NL+ V+ + ITS ++ + GC +LS +P + W H V +A+++ R +C G+ + L ++S+ W LDL AHQDAL L ++L + L+ + E N A + W AL D++L +Q+F H+ +V+++ HV+++ P L N ++S + K+K PG + P SP+K + A R Q DTS P T K+ LG+F +LP ++KLH++ +
Sbjct: 680 PLVHCVRLLSASFLLTGGKNVLVPDRDVRVSVKALALSCVGAAVALHPESFFSKLYKVPLDTTEYPEEQYVSDILNYIDHGDPQVRGATAILCGTLICSILSRSRFHVGDWMGTIRTLTGNT----FSLADCIPLLRKTLKDESSVTCKLACTAVRNCVMSLCSSSYSELGLQLIIDVLTLRNSSYWLVRTELLETLAEIDFRLVSFLEAKAENLHRGAHHYTGLLKLQERVLNNVVIHLLGDEDPRVRHVAAASLIRLVPKLFYKCDQGQADPVVAVARDQSSVYLKLLMHETQPPSHFSVSTITRIYRGYNLLPSITDVTMENNLSRVIAAVSHELITSTTRALTFGCCEALCLLSTAFPVCIWSLGW-----------HCGVP------------------------------PLSASDESRKSCTVGMATMILTLLSSAWFPLDLSAHQDALILAGNLLAASAPKSLRSSWASEEEA----NPAATKQEEVWPALGDRALVPMVEQLFSHLLKVINICAHVLDDVAPGPAIKAALPSLTNPPSLSPIRRKGKEKEPGEQASVP-------------------LSPKKGSEASAASR-------QSDTSG-----------------------PVTTSKSSSLGSFYHLPSYLKLHDVLK 1244 HSP 3 Score: 186.808 bits (473), Expect = 6.982e-47 Identity = 148/504 (29.37%), Postives = 245/504 (48.61%), Query Frame = 1
Query: 4483 KAWMVDFVKRLCFSKQANETQKKSTVQLLRCLNLEDIENILENKDFNHNLLETCIKQAHFTEQVQMQNPRSGTNSARMDLHQTFGAGESTDRENKDHLLLLSKRIVVNKILSTLPSISNTHE----YREFTYFSYNKDKLVAMASVEERSEYLMTIRCVLRFLSPSCYQNKLWNLGHENGQAVARFILM-LPQMCVHWINEQQQDVFVTLELCFHVTALLLHCQELSVCLMDQSTAYILTQAIDAIYTL--VKQLALVHDGE-------IANLTKKLPAHDQMDGAQNETKEESIFEISCQQVSDLLDALQNIISLDNTDYNKCLPKYLVCHLRQVITGLARLPFINSYVRIPPIVWKFGWSPTMEGLFHTELPPLPVDILKEKDVLKEFVYRVNLVGWTSRMQYEETWAALLGVLSSPP--SSAEDTSTEEEIELAEASCLAVHCITSLLLETTLSPVPGNSAISKYSVIHRSRDFPFLGSKAGKKLIAIRSEIEMSFNQQVS 5946
K W V VK C+++ +++ +L+ + ED+ + N +FN +LL C+ + M G SA + A E T L++ V+ + LP++ + + Y+S D L A++ + L R + ++L +L E + + +F++ L + H I+EQ + ++L+L + L Q + + ST ++ T A IY + + + V GE N K + ++ + T+ +C+ V++++++LQ++++L + N +P +L LR +I LARLP +NSY R+PP+VWK GWSP G F T P +PV+ L+EK+V KEF+YR+N +GWTSR Q+EETWA LLGVL + P E++ EE+ E + + LAV ITSL+L PV GN A+S R++ L ++ G+KL IR +E VS
Sbjct: 2097 KDWYVHLVKSQCWTR--SDSALLEGAELVNRIPAEDMNAFMMNSEFNLSLLAPCLS-------LGMSEISGGQKSALFE-----AAREVT----------LAR---VSGTVQQLPAVHHVFQPELPAEPAAYWSKLND-LFGDAALYQSLPTLA--RALAQYLVVVSKLPSHLHLPPEKEKDIVKFVVATLEALSWHLIHEQ---IPLSLDLQAGLDCCCLALQLPGLWSVVSSTEFV-THACSLIYCVHFILEAVAVQPGEQLLSPERRTNTPKAI--SEEEEEVDPNTQNPKYITAACEMVAEMVESLQSVLALGH-KRNSGVPAFLTPLLRNIIISLARLPLVNSYTRVPPLVWKLGWSPKPGGDFGTAFPEIPVEFLQEKEVFKEFIYRINTLGWTSRTQFEETWATLLGVLVTQPLVMEQEESPPEEDTERTQINVLAVQAITSLVLSAMTVPVAGNPAVSCLEQQPRNKPLKALDTRFGRKLSIIRGIVEQEIQAMVS 2563 HSP 4 Score: 92.8189 bits (229), Expect = 2.154e-18 Identity = 74/189 (39.15%), Postives = 112/189 (59.26%), Query Frame = 2
Query: 119 VKILLKSFLPNLRATSAVQRRTXXXXXXXXCQYSRKPLFFYGWLVNMLLGMITPLTDSLPVHTILGVLLSFRNIVPHLDSDHSKHGIKGSFG--SKKTPLSPTKGREAILEKKQYLQIYEVTMFCTKHKDHNVVTAALENLYQVLQCQAKPLLEILLSSTGIAPTITGDLNTEQGRTDSPAPSETTDSG 679
+K+LLK+F+ NL+++S RRT++ S S+CQ+SR+ +FY WL+N+LLG++ P+ D ILGVLL+ R +VP L +KGSFG K+ +SP+ +Q +Q+YE+T+ T+H+DHNVVT ALE L Q+ + LL+ L + GI +T GR+ S + E G
Sbjct: 248 IKVLLKAFIANLKSSSPTIRRTAAGSAVSICQHSRRTQYFYSWLLNVLLGLLVPVEDEHSTLLILGVLLTLRYLVPLLQQQVKDTSLKGSFGVTRKEMEVSPS--------AEQLVQVYELTLHHTQHQDHNVVTGALELLQQLFRTPPPELLQTLTAVGGIG-QLTAAKEESGGRSRSGSIVELIAGG 427 The following BLAST results are available for this feature:
BLAST of TCONS_00027213 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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