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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027215 ID=TCONS_00027215|Name=TCONS_00027215|organism=Clytia hemisphaerica|type=transcript|length=7390bpRun BLAST on NCBI transcript from alignment at sc0000609:150070..200651- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00027215 ID=TCONS_00027215|Name=TCONS_00027215|organism=Clytia hemisphaerica|type=transcript|length=50582bp|location=Sequence derived from alignment at sc0000609:150070..200651- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00027215 vs. Swiss-Prot (Human)
Match: HD (Huntingtin OS=Homo sapiens GN=HTT PE=1 SV=2) HSP 1 Score: 771.926 bits (1992), Expect = 0.000e+0 Identity = 651/2216 (29.38%), Postives = 1045/2216 (47.16%), Query Frame = 2
Query: 839 SAIPKIPSVQVSNSETETLSPSTEVIEDDSEMDQENEEGLKLPRTYT----NGSMVEIEGDPLGAKRDRLESAFLDIQEETSS---QTSMD----EIFRNESFCSTVVQAVVERQFNIDAVACTG---------------------VPLLNCVRLL-CSFLLSGQPGKVLPDSSTRVSVKSLALHCIGSALNLFPEALLARVLPKELQT-EGSSRQLVRDVFVLKNHEDPQIKGSVSAVIGHFIQAAM---RFSVGQFTHWNSKMSAKYETEPIDLMDALDIIGDLFKDESAVTIKQNCHAARHCILGLLGSDHNILAYDLVQQMIGLYDCSYWLVKTEILDTFHQLDYKLLQIIEPHWITYKHLSTLNKKYINIQQQVVH-VLTHLLGDEDIRVRQAAANSIAKTIPRLFYSNTTPQDLLMCAALIDNT--------NDQSTNDKFEM--------------------ISCNLAAVLRKIFELQITSVSKFMIHGCIHCFYILSEVYPPSKYP*AWEILPSGASSSKHKKVNENQQAIRDRTFTGXXXXXXXXXXXXXXRKLDFAATEDGRSTC--GILSTTLDIMSAGWMMLDLQAHQDALKLCVHMLCGACLPFLKKKPSEAMETSTSQNTADVGLTDSWSALQDQSLQHFAKQIFLHVTRVLHVLMHVIEETNP----------LANVKTISSFVNQNKDKTPGGSGNTPSASQNVSATPSPNATPQTTTSPRKFALPRAMQRNKQEPTPQPDTSKLVEGGNTPSGDGKQTPSNQGTPQPSNTDKNERLGNFVNLPQFMKLHEILKGAFKNYQ-TSTVFHALEKFNGFVRGILEAFGLLMELATFNELGTHAEEFLDYLKATARVEEEITFLAVQQLLKGLFGTNAASDPEMYKLPESTEQLTSIHSDQITQQPSAKQQNTAYASPIDFKNAYEAFFSHPYSQLSDSLHMVPVADPAIGSF---ERGSKALNMFKSFKKTLIPQGRPIVKVSKERV--ASIQSYIRLFEPLVIHALKSYTTTSSVTLQCQAIHLLDQLIRLRVNYSLLDSDQVFIGFVLKQFEFITSGQISSPETFIPTVFQFLVLLSYECYQPKFTQAKAIIGMPRIMRLCDEVMACEQPAVTHAIPALKPIVQDLFTSQSQTRPDSAKDLDTQREVIVSMLLRVVQYPEVLQMLTTVLNGS-KTDDEKWKRLSRVIIDTLLPSLSKLEVQMESMVQLQTLFSLMDAVAPLALRPGDIILKPLLDI--HLPRNNQINRAXXXXXXXXXXXXMQNKEDIIFTRMQQLD-SSLVRPCFLSNA---GDD-ENIEQPTKLTSAES-AAEYFAQFILYFVDLSCQELERCYYGVTVESEQAXXXXXXXXXXXXXXXYIAKSGSFKILSSHLLSCIQKPRQRQDDASTTCLLTSVTNNL--RSLPHQHSFCFLKWLSCLQNLNLQNATFWNE--------QFSSS--LTNQKAGQYH--------VLWERDVIGKGALLLYCEVVLSQLKEQKSGSMEALGDLLKNNIDKLMLHFNEPPVKELISRVLQNTGSTEIFLQTITEHI----TPKFLQKKSSALKWLLQHLECVNLSQSPQVILLLLKILPHFKIYGLARKAETLTCRRVDYIQSLTDEKNPNLHEALV-----------EFTSTKSMKRSYPRLCSSIERMTKQVTSSEASTLSAHQHPLADT-PQADYKKYIIKKAWMVDFVKRLCFSKQANETQKKSTVQLLRCLNLEDIENILENKDFNHNLLETCIKQAHFTEQVQMQNPRSGTNSARMDLHQTFGAGESTDRENKDHLLLLSKRIVVNKILSTLPSISNTHE----YREFTYFSYNKDKLVAMASVEERSEYLMTIRCVLRFLSPSCYQNKLWNLGHENGQAVARFILM-LPQMCVHWINEQQQDVFVTLELCFHVTALLLHCQELSVCLMDQSTAYILTQAIDAIYTL--VKQLALVHDGE-------IANLTKKLPAHDQMDGAQNETKEESIFEISCQQVSDLLDALQNIISLDNTDYNKCLPKYLVCHLRQVITGLARLPFINSYVRIPPIVWKFGWSPTMEGLFHTELPPLPVDILKEKDVLKEFVYRVNLVGWTSRMQYEETWAALLGVLSSPP--SSAEDTSTEEEIELAEASCLAVHCITSLLLETTLSPVPGNSAISKYSVIHRSRDFPFLGSKAGKKLIAIRSEIEMSFNQQVS 7051
SA+P P++ + N T+ SP I D S+ E + P + +G+ + G +G +D E A + +E S +SM + +N S C + V++ D G PL++CVRLL SFLL+G ++PD RVSVK+LAL C+G+A+ L PE+ +++ L T E Q V D+ +H DPQ++G+ + + G I + + RF VG + ++ L D + ++ KDES+VT K C A R+C++ L S ++ L L+ ++ L + SYWLV+TE+L+T ++D++L+ +E + + +Q++V++ V+ HLLGDED RVR AA S+ + +P+LFY Q + A D + ++ F + + NL+ V+ + ITS ++ + GC +LS +P + W H V +A+++ R +C G+ + L ++S+ W LDL AHQDAL L ++L + L+ + E N A + W AL D++L +Q+F H+ +V+++ HV+++ P L N ++S + K+K PG + P SP+K + A R Q DTS P T K+ LG+F +LP ++KLH++LK NY+ T + ++ EKF GF+R L+ ++ELAT ++G EE L YLK+ E + + VQQLLK LFGTN AS Q + S+ Q A++ ++ P Y F PY+ + +L AD ++ + E+ + F +K + V+K R +I ++IRLFEPLVI ALK YTTT+ V LQ Q + LL QL++LRVNY LLDSDQVFIGFVLKQFE+I GQ E IP +F FLVLLSYE Y +K IIG+P+I++LCD +MA + AVTHAIPAL+PIV DLF + + D+ K+L+TQ+EV+VSMLLR++QY +VL+M VL K +++KWKRLSR I D +LP L+K ++ ++S L L +L + +AP +LRP D++L+ + + + + +S ++ +LR L+ Q+ EDI+ +R+Q+L S + C + N GD +E+ ++ ++ E F++F+L V + +++ V + +Q L TLL L +I KSG F+ +++ R + D T + NL RS+ H L W L +N + +W E SS+ L+ Q +G+ + R+++ +GAL+L+C+ V L + E L L+ N+I L+ +EPPV++ IS V +N+ ++ +F+Q I TP L+K LQ LE ++LSQS V+ L + L LAR + L CRRV+ + + NL ++ E+ + + + + RL S ++R S D + K W V VK C+++ +++ +L+ + ED+ + N +FN +LL C+ + M G SA + A E T L++ V+ + LP++ + + Y+S D L A++ + L R + ++L +L E + + +F++ L + H I+EQ + ++L+L + L Q + + ST ++ T A IY + + + V GE N K + ++ + T+ +C+ V++++++LQ++++L + N +P +L LR +I LARLP +NSY R+PP+VWK GWSP G F T P +PV+ L+EK+V KEF+YR+N +GWTSR Q+EETWA LLGVL + P E++ EE+ E + + LAV ITSL+L PV GN A+S R++ L ++ G+KL IR +E VS
Sbjct: 538 SAVPSDPAMDL-NDGTQASSP----ISDSSQTTTEGPDSAVTPSDSSEIVLDGTDNQYLGLQIGQPQDEDEEATGILPDEASEAFRNSSMALQQAHLLKNMSHCRQPSDSSVDKFVLRDEATEPGDQENKPCRIKGDIGQSTDDDSAPLVHCVRLLSASFLLTGGKNVLVPDRDVRVSVKALALSCVGAAVALHPESFFSKLYKVPLDTTEYPEEQYVSDILNYIDHGDPQVRGATAILCGTLICSILSRSRFHVGDWMGTIRTLTGNT----FSLADCIPLLRKTLKDESSVTCKLACTAVRNCVMSLCSSSYSELGLQLIIDVLTLRNSSYWLVRTELLETLAEIDFRLVSFLEAKAENLHRGAHHYTGLLKLQERVLNNVVIHLLGDEDPRVRHVAAASLIRLVPKLFYKCDQGQADPVVAVARDQSSVYLKLLMHETQPPSHFSVSTITRIYRGYNLLPSITDVTMENNLSRVIAAVSHELITSTTRALTFGCCEALCLLSTAFPVCIWSLGW-----------HCGVPP------------------------------LSASDESRKSCTVGMATMILTLLSSAWFPLDLSAHQDALILAGNLLAASAPKSLRSSWASEEEA----NPAATKQEEVWPALGDRALVPMVEQLFSHLLKVINICAHVLDDVAPGPAIKAALPSLTNPPSLSPIRRKGKEKEPGEQASVP-------------------LSPKKGSEASAASR-------QSDTSG-----------------------PVTTSKSSSLGSFYHLPSYLKLHDVLKATHANYKVTLDLQNSTEKFGGFLRSALDVLSQILELATLQDIGKCVEEILGYLKSCFSREPMMATVCVQQLLKTLFGTNLAS------------QFDGLSSNPSKSQGRAQRLGSSSVRP----GLYHYCFMAPYTHFTQAL-----ADASLRNMVQAEQENDTSGWFDVLQKVSTQLKTNLTSVTKNRADKNAIHNHIRLFEPLVIKALKQYTTTTCVQLQKQVLDLLAQLVQLRVNYCLLDSDQVFIGFVLKQFEYIEVGQFRESEAIIPNIFFFLVLLSYERY-----HSKQIIGIPKIIQLCDGIMASGRKAVTHAIPALQPIVHDLFVLRGTNKADAGKELETQKEVVVSMLLRLIQYHQVLEMFILVLQQCHKENEDKWKRLSRQIADIILPMLAKQQMHIDSHEALGVLNTLFEILAPSSLRPVDMLLRSMFVTPNTMASVSTVQLWISGILAILRVLISQSTEDIVLSRIQELSFSPYLISCTVINRLRDGDSTSTLEEHSEGKQIKNLPEETFSRFLLQLVGILLEDIVTKQLKVEMSEQQHTFYCQELGTLLMCLIHIFKSGMFRRITA------AATRLFRSDGCGGSFYTLDSLNLRARSMITTHPALVLLWCQILLLVNHTDYRWWAEVQQTPKRHSLSSTKLLSPQMSGEEEDSDLAAKLGMCNREIVRRGALILFCDYVCQNLHDS-----EHLTWLIVNHIQDLISLSHEPPVQDFISAVHRNSAASGLFIQAIQSRCENLSTPTMLKKT-------LQCLEGIHLSQSGAVLTLYVDRLLCTPFRVLARMVDILACRRVEMLLA------ANLQSSMAQLPMEELNRIQEYLQSSGLAQRHQRLYSLLDRFRLSTMQDSLSPSPPVSSHPLDGDGHVSLETVSPDKDWYVHLVKSQCWTR--SDSALLEGAELVNRIPAEDMNAFMMNSEFNLSLLAPCLS-------LGMSEISGGQKSALFE-----AAREVT----------LAR---VSGTVQQLPAVHHVFQPELPAEPAAYWSKLND-LFGDAALYQSLPTLA--RALAQYLVVVSKLPSHLHLPPEKEKDIVKFVVATLEALSWHLIHEQ---IPLSLDLQAGLDCCCLALQLPGLWSVVSSTEFV-THACSLIYCVHFILEAVAVQPGEQLLSPERRTNTPKAI--SEEEEEVDPNTQNPKYITAACEMVAEMVESLQSVLALGH-KRNSGVPAFLTPLLRNIIISLARLPLVNSYTRVPPLVWKLGWSPKPGGDFGTAFPEIPVEFLQEKEVFKEFIYRINTLGWTSRTQFEETWATLLGVLVTQPLVMEQEESPPEEDTERTQINVLAVQAITSLVLSAMTVPVAGNPAVSCLEQQPRNKPLKALDTRFGRKLSIIRGIVEQEIQAMVS 2563 HSP 2 Score: 92.4337 bits (228), Expect = 3.862e-18 Identity = 74/189 (39.15%), Postives = 112/189 (59.26%), Query Frame = 2
Query: 119 VKILLKSFLPNLRATSAVQRRTXXXXXXXXCQYSRKPLFFYGWLVNMLLGMITPLTDSLPVHTILGVLLSFRNIVPHLDSDHSKHGIKGSFG--SKKTPLSPTKGREAILEKKQYLQIYEVTMFCTKHKDHNVVTAALENLYQVLQCQAKPLLEILLSSTGIAPTITGDLNTEQGRTDSPAPSETTDSG 679
+K+LLK+F+ NL+++S RRT++ S S+CQ+SR+ +FY WL+N+LLG++ P+ D ILGVLL+ R +VP L +KGSFG K+ +SP+ +Q +Q+YE+T+ T+H+DHNVVT ALE L Q+ + LL+ L + GI +T GR+ S + E G
Sbjct: 248 IKVLLKAFIANLKSSSPTIRRTAAGSAVSICQHSRRTQYFYSWLLNVLLGLLVPVEDEHSTLLILGVLLTLRYLVPLLQQQVKDTSLKGSFGVTRKEMEVSPS--------AEQLVQVYELTLHHTQHQDHNVVTGALELLQQLFRTPPPELLQTLTAVGGIG-QLTAAKEESGGRSRSGSIVELIAGG 427 The following BLAST results are available for this feature:
BLAST of TCONS_00027215 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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