TCONS_00027229 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027229
Unique NameTCONS_00027229
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length569

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027229 ID=TCONS_00027229|Name=TCONS_00027229|organism=Clytia hemisphaerica|type=transcript|length=569bp
GTTTGTTTGTCGAAAAGCAACTAAGACCATATTGATTTCATCTCTTGACT
TTTAAACACTTAATGTTTGAAAATGGcccgattttattttgttttactaA
TATCAATGTTTTTCAACCATCATGAAATTTCTGGTCAGCTATCCAACTTC
ACGTTTGATGAATTTGTCACATTGAACAACCAACTATCGAAACAATGTCT
TCGGAATTCTCCCCGATTGATTCATAATTCGTCAAAGACCTGTGAAGCTG
AGTTCAATCCACATTGGCTATGTTGGCCAGACACTCCTCCCAACGTTACT
ATAACAACCACATGTCCATCAATGCTTTATAACAACACTTTTGGCCAAAT
TAAACGCAAGTGTTTGAGCAATGGTACTTGGGATACATCTGTTGATAAAA
GTGAATGTGTTCCACTAAATACACAACAATCATGGTGGAATGTTGAAGAC
TTCCTAAGACAGTATAATTTCACGCGTACTGTTCCAAATAATATCTTGCC
AACTCAAGTACCTCCAAAAAGGTCCAATGAAAGATTGGAAATAACAATTG
AGATGTTGCAACAATTCTC
Run BLAST on NCBI

protein sequence of TCONS_00027229-protein

>TCONS_00027229-protein ID=TCONS_00027229-protein|Name=TCONS_00027229-protein|organism=Clytia hemisphaerica|type=polypeptide|length=165bp
MARFYFVLLISMFFNHHEISGQLSNFTFDEFVTLNNQLSKQCLRNSPRLI
HNSSKTCEAEFNPHWLCWPDTPPNVTITTTCPSMLYNNTFGQIKRKCLSN
GTWDTSVDKSECVPLNTQQSWWNVEDFLRQYNFTRTVPNNILPTQVPPKR
SNERLEITIEMLQQF
Run BLAST on NCBI

transcript from alignment at sc0000611:95784..100080-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027229 ID=TCONS_00027229|Name=TCONS_00027229|organism=Clytia hemisphaerica|type=transcript|length=4297bp|location=Sequence derived from alignment at sc0000611:95784..100080- (Clytia hemisphaerica)
GTTTGTTTGTCGAAAAGCAACTAAGACCATATTGATTTCATCTCTTGACT
TTTAAACACTTAATGTTTGAAAATGGCCCGATTTTATTTTGTTTTACTAA
TATCAATGGTAAGTGATGATGTGCTTGGATGTTTCATTTAAAATCTAAAT
ACCCTTTTTTCTTCATTTCGGGCATCTTTGCATTTTATCAATCTCCACTT
TTTCGAGAGTAGTCAAGAATATTAAATTCTTTCAATAAAGTTGTTGAACC
ACCATCAAGATATCGAGGAATTCTTTTATCAAGAGTATTTCTTCTTTTAA
TGTAGTTTTTCAACCATCATGAAATTTCTGGTCAGCTATCCAACTTCACG
TTTGATGAATTTGTCACATTGAACAACCAACTATCGAAACAATGTCTTCG
GAATTCTCCCCGATTGATTCATAGTGAGTGGCTGATATGACTAGCTGTAG
CTATTTGTCCGAGGGGGAAGGGGCGCTCGATTTCTCTAAGTAAAATATGC
CTATCCCACCACGCGATTTTTTTATCACTTTGTTGGTCTTTTGGATTTTA
AGTGTTTTAATATACAATGAAGTAACGTCAGTTCTTTAAAACAGCATTGC
AATCGCACTTAAAGTGACGTCAAACTTCCCCCGTTTTTTCTTGGGGAAAA
TATTTGTTAAAGGTTACAGACGGAACACTGTCGAGACAAACAGGCAAACT
TTATATTAAAAAAAAATGAAAATGCAACTTTGAAGAGAAAGAATCTATAT
TCGCTATTGACGCCGAACTCATTTTCAATCTTTAAGATTCGTCAAAGACC
TGTGAAGCTGAGTTCAATCCACATTGGCTATGTTGGCCAGACACTCCTCC
CAACGTTACTATAACAACCACATGTCCATCAATGCTTTATAACAACACTT
TTGGTGAGTTAAAATTGCCAAGGCTGTATATTACAAGGTCCTGTATAAGG
CTCGCATGTTTTATATATCTATTGGAAACCACGCTTTTTTGGTGCATGAT
TCAATTTATCTTGATGAAAAATATTGAATTTCGACCGTTAAAGTATTCTT
AAGAAAGTGCCAAAATTGAGGGTGAAATATTCTTAACCTATTCTTACTTT
TTTAGACTTGTCTTTTTTACAAACATGAGAAATGATCAATTTGAGAGTTT
TGGACTTTTGAGTGAACATTTGGGTTAAAATTAAAAATTCTGTAAAATTC
ACCCTAGAGGGTATTCTTAGGGTATTTACGATTTGGCCATATTTCACCCT
GATATTCTTATAAAAGATATTCTTATAAATAAAGCGTGTATTTAGGCTGT
TTTTGAGTTACGACACTCCCTAATAATTAGGGCAACAAAGTTCATGATTC
CTGGCCATGACTTCAATGAACTTATTGAACCTTTCTTCAGCGTTATTTAG
GTTATTTTGAAATTTGGCTTTCAACCCTCGGACCGCCTTAGTGGTCCTAG
AAAAGTGGAAAAAAGGAAGATTTTTTGAGTTTTGCAACCCATTGGAACTA
ACTTAACCAAATTTTGTTGTTTTTGAGGGAAAAATTTAAATTTTCCTATT
TTTCCGACCCTAATAGAACTGAGATTTTCTGACTTTTCCAATCCTTAAAG
GGACTGCCAGGTTCCAAAAAGACACCCTTAAGAACAACACATACCCGTAC
TTTCACTTACCTAAGAGTATGTTTGAGTGTATATTTTCAATCTTGAATTT
TTTTAAATTCTAATCAAACGTTATTTGTACGTTATATGGAGGTTAGAAAA
TTGTTGTTTTGATCGTTTCTATTTTTTCAGGCCAAATTAAACGCAAGTGT
TTGAGCAATGGTACTTGGGATACATCTGTTGATAAAAGTGAATGTGTTCC
ACTAAATACACAACAATCATGGTGGAATGTTGAAGACTTCCTAAGACAGT
ATAATTTCACGGTTGGTTTTTTACCAGCTGTCTTAAAGGGGGTGGGGTAG
TTGAATGAAGTTTTAAAAATTGTTCCACGGATTTTAAAGTAAAATCTTTC
GGTGCAGTTTTTAACAGAACAAGAATCATTTGCTGTTTTCACTCTCAAAG
TCAAATTTAATTTTTTAGCTTACAAAATTGCTAATTATGAATTTTGTTTT
CAGCGTACTGTTCCAAATAATATCTTGCCAACTCAAGTACCTCCAAAAAG
GGTATGTTACATTGATTCGTATGCTTTTATTTCATGAAATTTTATCTCAG
AGAATTCGACTCGCGCATCGGCACCTAATTGCTTTTGTGCAATACAACTC
TCTTTTATCTACAAAGATAGCCGGATAATTCTCCGACAGAAATTTCGAAC
GATCACAAAACTCTTCGGATATAAATCAAGTGATCTGGGAAAACGGTCAA
CGGGGTTATGTCCTCAAGTTTTCTTGGATCTCTATGCTCCCTTTTTATTA
CATTTGTTTGATGTACATATGAATGAGTGACCACAAAAATAATGAATAAA
ACGGTGAAAATTTAGTATTTAATAAGGATGGAGTAGGAGAATTACGTCGT
CGTCGTCGTCGTCGTCGTCGTCGTATCTCGATTTTTTAAGGCGCACCTTA
ATTTTCCGAGTTGATTCTAAGTCGGTCATTTTAGGTGCACCTTAAATTTT
CGAGTTTTAGAACTCGGTTATTTTTAGGTTCACCTTATTTTTTCGAGTTA
CATAACTTGGTCATTTTAGGTGCACCTTAAATCTTCGTGCTACATAACTC
GCTTTTTAAGGTGCACCTTAATTTTTCGAGTTATGTAACTCGATTATTTA
TGGTGCAACTTAAGTTTTCGAGTTTCATAACTTGGTTACACCTAAAGCGA
CTTAATCGAGTTAATTTTTCACATAACCAAGTTGGTCAATCATACTGTAA
TTTTCTCTCTTCGAATAAAGTAGTAGTTTCGACGTCAGAAGAGACGGGGA
TAAACTTTCAAAAATGCGTCAGAAAAGCCCTTTCTATAGTGTCGTGTTTA
TGGTAATTTATTGATATTCCAAAACCCTTTTTGAAAAGAACTCATGTCCA
AACTCAAATTCAAGTCTTTGTACGATTTTTCCCTTCACAAAAGACAACCT
TTGCAGAGTAGCAGAGAGTTTGAATCTTTTCCGTTCCGAAACCCAGGCTT
AATTATAACGTTACTTATGGACGCCAAAGAAAGTGTATAGGCTCAAAAGC
AAACGTCTGGTATCCTTCTAATTGTTATAAAAAAGCCTTCAAACTTTGAT
AATCTTTTCAACTAACGCTGTGTCGCTCCTCTATCCGAAAAGAGAAAATT
ACAGTATGATTTACCAACTTGGTTGTGTGAAAAATTAACTCGCTCATTAT
AGATGTACCTTAAAAAACCAAGTTATGAAACTCGAAAACTTAAGGTGCAC
CATAAATAATCGAGTTATATAACTCGAAAAATTAAGGTGCACCTTAAAAA
ACCGAGATAGGTAACTCCGAAATTTAAGGTGCAACAGGTGCACCTAAAAT
GACCGAGTCATTTAACTCGAAAAATTAAAGTGCACATAAGAAACCGAGTA
ATATAACTCGAAAATTTAAGGTGCACCTAAAATGACCCAGTAAACTTAAC
TCGGAAAATAAAGGCGCACCTTAAAAAATCGAGTTATGACGTCGTAACTC
GGGTTTTTTAACTCGGGTTTTCCAGGCCTCGAGAATTAAGGGATGGCTAG
ATGTTTAGCTCAAATTTTCAAGGCTTTCTCTTAAAGAGAAAATGTTTCTA
GATCTGAGTGAAGGAACGTGGCATGGGACAGGGTGTAAAATTCCGAATAA
TTTCTTTGCTCTCTCGACATCTGTCTATTAGTCGATTAAACCTTCTCAAA
ACCATAAGGACTGAGAACATCTAAGAAGGCTTTAAAATATTTATATCTTT
ATTGATCCGGTGACAACTTCAATGGTCAAAATTCTTGTATAAAAAGTTAT
AGGTCTTAGAAGGTTGCCCGTTGGAGTTGAAAAAGAATAGCAAAGGTTTT
ATGACCCAAATGAGCTGCCTTCTAGAGGCTGTAGCTTTTGATTGGAGAAA
TTTAAGGGAAAAATAACTAATATAGTTGAAGTCAGGAGGCTTCAAATTAA
TTCTCTAGCAAAATGAAGATTTTCATCGTCATCTACTAAAGTTTTTAAAT
TATTTTTCCTAGAAATCACAGTGCTCTAAATATGATATGTACATTTTTCG
AAGAATGAATTAGAAAATTGCTTACGTCCTTTCAATCAATGACATTTATA
TACATTAGGTTCTTGAAATTAACGTGTTGACGTTTTTCATGCGTTTTTAG
TCCAATGAAAGATTGGAAATAACAATTGAGATGTTGCAACAATTCTC

Coding sequence (CDS) from alignment at sc0000611:95784..100080-

>TCONS_00027229 ID=TCONS_00027229|Name=TCONS_00027229|organism=Clytia hemisphaerica|type=CDS|length=2970bp|location=Sequence derived from alignment at sc0000611:95784..100080- (Clytia hemisphaerica)
TCCAATGAAAGATTGGAAATAACAATTGAGATGTTGCAACAATTCCGTAC
TGTTCCAAATAATATCTTGCCAACTCAAGTACCTCCAAAAAGGGCCAAAT
TAAACGCAAGTGTTTGAGCAATGGTACTTGGGATACATCTGTTGATAAAA
GTGAATGTGTTCCACTAAATACACAACAATCATGGTGGAATGTTGAAGAC
TTCCTAAGACAGTATAATTTCACGATTCGTCAAAGACCTGTGAAGCTGAG
TTCAATCCACATTGGCTATGTTGGCCAGACACTCCTCCCAACGTTACTAT
AACAACCACATGTCCATCAATGCTTTATAACAACACTTTTGTTTTTCAAC
CATCATGAAATTTCTGGTCAGCTATCCAACTTCACGTTTGATGAATTTGT
CACATTGAACAACCAACTATCGAAACAATGTCTTCGGAATTCTCCCCGAT
TGATTCATAATGGCCCGATTTTATTTTGTTTTACTAATATCAATGTCCAA
TGAAAGATTGGAAATAACAATTGAGATGTTGCAACAATTCCGTACTGTTC
CAAATAATATCTTGCCAACTCAAGTACCTCCAAAAAGGGCCAAATTAAAC
GCAAGTGTTTGAGCAATGGTACTTGGGATACATCTGTTGATAAAAGTGAA
TGTGTTCCACTAAATACACAACAATCATGGTGGAATGTTGAAGACTTCCT
AAGACAGTATAATTTCACGATTCGTCAAAGACCTGTGAAGCTGAGTTCAA
TCCACATTGGCTATGTTGGCCAGACACTCCTCCCAACGTTACTATAACAA
CCACATGTCCATCAATGCTTTATAACAACACTTTTGTTTTTCAACCATCA
TGAAATTTCTGGTCAGCTATCCAACTTCACGTTTGATGAATTTGTCACAT
TGAACAACCAACTATCGAAACAATGTCTTCGGAATTCTCCCCGATTGATT
CATAATGGCCCGATTTTATTTTGTTTTACTAATATCAATGTCCAATGAAA
GATTGGAAATAACAATTGAGATGTTGCAACAATTCCGTACTGTTCCAAAT
AATATCTTGCCAACTCAAGTACCTCCAAAAAGGGCCAAATTAAACGCAAG
TGTTTGAGCAATGGTACTTGGGATACATCTGTTGATAAAAGTGAATGTGT
TCCACTAAATACACAACAATCATGGTGGAATGTTGAAGACTTCCTAAGAC
AGTATAATTTCACGATTCGTCAAAGACCTGTGAAGCTGAGTTCAATCCAC
ATTGGCTATGTTGGCCAGACACTCCTCCCAACGTTACTATAACAACCACA
TGTCCATCAATGCTTTATAACAACACTTTTGTTTTTCAACCATCATGAAA
TTTCTGGTCAGCTATCCAACTTCACGTTTGATGAATTTGTCACATTGAAC
AACCAACTATCGAAACAATGTCTTCGGAATTCTCCCCGATTGATTCATAA
TGGCCCGATTTTATTTTGTTTTACTAATATCAATGTCCAATGAAAGATTG
GAAATAACAATTGAGATGTTGCAACAATTCCGTACTGTTCCAAATAATAT
CTTGCCAACTCAAGTACCTCCAAAAAGGGCCAAATTAAACGCAAGTGTTT
GAGCAATGGTACTTGGGATACATCTGTTGATAAAAGTGAATGTGTTCCAC
TAAATACACAACAATCATGGTGGAATGTTGAAGACTTCCTAAGACAGTAT
AATTTCACGATTCGTCAAAGACCTGTGAAGCTGAGTTCAATCCACATTGG
CTATGTTGGCCAGACACTCCTCCCAACGTTACTATAACAACCACATGTCC
ATCAATGCTTTATAACAACACTTTTGTTTTTCAACCATCATGAAATTTCT
GGTCAGCTATCCAACTTCACGTTTGATGAATTTGTCACATTGAACAACCA
ACTATCGAAACAATGTCTTCGGAATTCTCCCCGATTGATTCATAATGGCC
CGATTTTATTTTGTTTTACTAATATCAATGTCCAATGAAAGATTGGAAAT
AACAATTGAGATGTTGCAACAATTCCGTACTGTTCCAAATAATATCTTGC
CAACTCAAGTACCTCCAAAAAGGGCCAAATTAAACGCAAGTGTTTGAGCA
ATGGTACTTGGGATACATCTGTTGATAAAAGTGAATGTGTTCCACTAAAT
ACACAACAATCATGGTGGAATGTTGAAGACTTCCTAAGACAGTATAATTT
CACGATTCGTCAAAGACCTGTGAAGCTGAGTTCAATCCACATTGGCTATG
TTGGCCAGACACTCCTCCCAACGTTACTATAACAACCACATGTCCATCAA
TGCTTTATAACAACACTTTTGTTTTTCAACCATCATGAAATTTCTGGTCA
GCTATCCAACTTCACGTTTGATGAATTTGTCACATTGAACAACCAACTAT
CGAAACAATGTCTTCGGAATTCTCCCCGATTGATTCATAATGGCCCGATT
TTATTTTGTTTTACTAATATCAATGTCCAATGAAAGATTGGAAATAACAA
TTGAGATGTTGCAACAATTCCGTACTGTTCCAAATAATATCTTGCCAACT
CAAGTACCTCCAAAAAGGGCCAAATTAAACGCAAGTGTTTGAGCAATGGT
ACTTGGGATACATCTGTTGATAAAAGTGAATGTGTTCCACTAAATACACA
ACAATCATGGTGGAATGTTGAAGACTTCCTAAGACAGTATAATTTCACGA
TTCGTCAAAGACCTGTGAAGCTGAGTTCAATCCACATTGGCTATGTTGGC
CAGACACTCCTCCCAACGTTACTATAACAACCACATGTCCATCAATGCTT
TATAACAACACTTTTGTTTTTCAACCATCATGAAATTTCTGGTCAGCTAT
CCAACTTCACGTTTGATGAATTTGTCACATTGAACAACCAACTATCGAAA
CAATGTCTTCGGAATTCTCCCCGATTGATTCATAATGGCCCGATTTTATT
TTGTTTTACTAATATCAATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015310XLOC_015310Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027229-proteinTCONS_00027229-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027229-exon-sc0000611-1575043694:99973..100080TCONS_00027229-exon-sc0000611-1575043694:99973..100080Clytia hemisphaericaexon
TCONS_00027229-exon-sc0000611-1575043694:99658..99775TCONS_00027229-exon-sc0000611-1575043694:99658..99775Clytia hemisphaericaexon
TCONS_00027229-exon-sc0000611-1575043694:99178..99294TCONS_00027229-exon-sc0000611-1575043694:99178..99294Clytia hemisphaericaexon
TCONS_00027229-exon-sc0000611-1575043694:98170..98300TCONS_00027229-exon-sc0000611-1575043694:98170..98300Clytia hemisphaericaexon
TCONS_00027229-exon-sc0000611-1575043694:97930..97977TCONS_00027229-exon-sc0000611-1575043694:97930..97977Clytia hemisphaericaexon
TCONS_00027229-exon-sc0000611-1575043694:95784..95830TCONS_00027229-exon-sc0000611-1575043694:95784..95830Clytia hemisphaericaexon
TCONS_00027229-exon-sc0000611-1510915933:99973..100080TCONS_00027229-exon-sc0000611-1510915933:99973..100080Clytia hemisphaericaexon
TCONS_00027229-exon-sc0000611-1510915933:99658..99775TCONS_00027229-exon-sc0000611-1510915933:99658..99775Clytia hemisphaericaexon
TCONS_00027229-exon-sc0000611-1510915933:99178..99294TCONS_00027229-exon-sc0000611-1510915933:99178..99294Clytia hemisphaericaexon
TCONS_00027229-exon-sc0000611-1510915933:98170..98300TCONS_00027229-exon-sc0000611-1510915933:98170..98300Clytia hemisphaericaexon
TCONS_00027229-exon-sc0000611-1510915933:97930..97977TCONS_00027229-exon-sc0000611-1510915933:97930..97977Clytia hemisphaericaexon
TCONS_00027229-exon-sc0000611-1510915933:95784..95830TCONS_00027229-exon-sc0000611-1510915933:95784..95830Clytia hemisphaericaexon
TCONS_00027229-exon-sc0000611-1491911889:99973..100080TCONS_00027229-exon-sc0000611-1491911889:99973..100080Clytia hemisphaericaexon
TCONS_00027229-exon-sc0000611-1491911889:99658..99775TCONS_00027229-exon-sc0000611-1491911889:99658..99775Clytia hemisphaericaexon
TCONS_00027229-exon-sc0000611-1491911889:99178..99294TCONS_00027229-exon-sc0000611-1491911889:99178..99294Clytia hemisphaericaexon
TCONS_00027229-exon-sc0000611-1491911889:98170..98300TCONS_00027229-exon-sc0000611-1491911889:98170..98300Clytia hemisphaericaexon
TCONS_00027229-exon-sc0000611-1491911889:97930..97977TCONS_00027229-exon-sc0000611-1491911889:97930..97977Clytia hemisphaericaexon
TCONS_00027229-exon-sc0000611-1491911889:95784..95830TCONS_00027229-exon-sc0000611-1491911889:95784..95830Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000611supercontigsc0000611:95784..100080 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	1.01361	0.830309	7.14192	8.43496	9.78468	13.2579	0.196626	0	0.951312	0.780691	0	0	1.0476	0.219248	0.190566	0.697136	0	0.205457	0	0	0.270261	0.28843	2.29702	1.00299
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001879GPCR_2_extracellular_dom
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027229 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top