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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027231 ID=TCONS_00027231|Name=TCONS_00027231|organism=Clytia hemisphaerica|type=transcript|length=1978bpRun BLAST on NCBI protein sequence of TCONS_00027231-protein >TCONS_00027231-protein ID=TCONS_00027231-protein|Name=TCONS_00027231-protein|organism=Clytia hemisphaerica|type=polypeptide|length=506bp FAILAALICVVCSFPEEENDDKDGLLYAGDMMLTPLQRMVIETGGDLSRVRun BLAST on NCBI transcript from alignment at sc0000611:112270..118866- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00027231 ID=TCONS_00027231|Name=TCONS_00027231|organism=Clytia hemisphaerica|type=transcript|length=6597bp|location=Sequence derived from alignment at sc0000611:112270..118866- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000611:112270..118866- >TCONS_00027231 ID=TCONS_00027231|Name=TCONS_00027231|organism=Clytia hemisphaerica|type=CDS|length=16731bp|location=Sequence derived from alignment at sc0000611:112270..118866- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00027231 vs. Swiss-Prot (Human)
Match: MEP1B (Meprin A subunit beta OS=Homo sapiens GN=MEP1B PE=1 SV=3) HSP 1 Score: 194.512 bits (493), Expect = 7.992e-53 Identity = 144/456 (31.58%), Postives = 219/456 (48.03%), Query Frame = 3
Query: 3 FAILAALICVVCSFPEEENDDKDGLLYAGDMMLTPLQRMVIETGGDLSRVRGDLTA-RAAMKNINV----LWLPNDKTVPYTIDDSLVDEPEATLGMMKAFREWEERSCLKFKRRDQEEDYINFFKEGGCWSYVG-RQGGAQNISLGDGCWDIGTVVHEIGHAMGFGHEQNRPDRDQYIKVHWQNVPERKRHNFQKYNDSKVDSLNSTYDYKSFMQYSKTAFGINDSLTLDPLQKDIFQ-LGQRVGFTKDDQYQAMELYRCNGKTTRPTPTYERYIPKGDDVCDFE-NGLCHYTQDDTDDFDWSRRYGGTPSGNTGPEADHTT----SRMGVFVYIEASSPRRLGDKARLMTKVFPASKDQQCLSFFLHMFSTNKTMMGQFNVYLVD---DN--GQQRILQKTGSQAVNDWTNVQMKFRPFGNYQIVFEGVRGT-SYQGDISLDDITFTKNQCPRN 1316
F L AL+ V+ EN D DG + I G L GD+ RA ++N + W T+PY ++DSL E A ++ AF + ++C+ FK E +YI+ FK GCWS VG R+ G Q +S+G C I TV HE HA+GF HEQ+R DRD Y+++ W + + HNF Y+D DSLN YDY S M YSKTAF T+ D +GQR+ F+ D + +LY C+ + D C FE +C Q D+ DW +R P GPE+DH+ G F++ ++SS +G A L ++ + QCL F+L+ + + Q N+Y+ + DN G ++++ W + + +++VFEG +G+ + G +S+DDI ++ +CP +
Sbjct: 9 FLFLDALL-VISGLATPENFDVDGGM--------DQDIFDINEGLGLDLFEGDIRLDRAQIRNSIIGEKYRW---PHTIPYVLEDSL--EMNAKGVILNAFERYRLKTCIDFKPWAGETNYISVFKGSGCWSSVGNRRVGKQELSIGANCDRIATVQHEFLHALGFWHEQSRSDRDDYVRIMWDRILSGREHNFNTYSDDISDSLNVPYDYTSVMHYSKTAFQNGTEPTIVTRISDFEDVIGQRMDFSDSDLLKLNQLYNCSSSLSFM------------DSCSFELENVCGMIQSSGDNADW-QRVSQVPR---GPESDHSNMGQCQGSGFFMHFDSSSV-NVGATAVLESRTLYPKRGFQCLQFYLY---NSGSESDQLNIYIREYSADNVDGNLTLVEEIKEIPTGSWQLYHVTLKVTKKFRVVFEGRKGSGASLGGLSIDDINLSETRCPHH 430 The following BLAST results are available for this feature:
BLAST of TCONS_00027231 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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