TCONS_00027245 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027245
Unique NameTCONS_00027245
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length649

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027245 ID=TCONS_00027245|Name=TCONS_00027245|organism=Clytia hemisphaerica|type=transcript|length=649bp
CTAGCATTGAAGTTTTGCTGAGTACAAATGTAGAGCAAAGTTTGCAAAAA
GTAGAAAAGAGCAAGGGAACATTGGTATACCTTTGGTTAATGAGAAATAT
TCGCGATGCTTTCTTCGTCAATCACCATTACAACGTATTTCACTTCCATG
GCAAAACATTGTTTCACCTGAGAATAGGGAGAGTTTGGCTGAGTGATAAC
GGCTGTTCTGAATCTGACCACTTTATCACCCAAACCACACACGTTTGCAC
ATTTAAAACCACCTCACCAACCACACACCGCCCCCGTCCTACGCAACTCA
ACCACCAAATTTCCAGATACCAAAACTCAGTCAACCTACCATGACGCCCC
AAAAACCAACTATCCAAACTTCATCATCGACACTCCAATTCAAGCCACAC
ATCAAGACAACAACCGCTCATCCACCACAACCCACAACCTACAAATCCCA
CCAATCAGACAAACATCATCAACCAACTCATGTCACGAGATAGGAAAAGA
CCAGCCGAACAACAACCACGAGAAACAACACAACCGATTCTAGACCAAAA
AAACCACACTTGAAGCTACCACTACCACACACTGAGAATGCTGAACGGAA
ACAAACAAATGAGCGGCTACCTTGAAGAACATACTGCAAATCACAAAAT
Run BLAST on NCBI

protein sequence of TCONS_00027245-protein

>TCONS_00027245-protein ID=TCONS_00027245-protein|Name=TCONS_00027245-protein|organism=Clytia hemisphaerica|type=polypeptide|length=113bp
SIEVLLSTNVEQSLQKVEKSKGTLVYLWLMRNIRDAFFVNHHYNVFHFHG
KTLFHLRIGRVWLSDNGCSESDHFITQTTHVCTFKTTSPTTHRPRPTQLN
HQISRYQNSVNLP
Run BLAST on NCBI

transcript from alignment at sc0000611:50462..51110

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027245 ID=TCONS_00027245|Name=TCONS_00027245|organism=Clytia hemisphaerica|type=transcript|length=649bp|location=Sequence derived from alignment at sc0000611:50462..51110 (Clytia hemisphaerica)
ATTTTGTGATTTGCAGTATGTTCTTCAAGGTAGCCGCTCATTTGTTTGTT
TCCGTTCAGCATTCTCAGTGTGTGGTAGTGGTAGCTTCAAGTGTGGTTTT
TTTGGTCTAGAATCGGTTGTGTTGTTTCTCGTGGTTGTTGTTCGGCTGGT
CTTTTCCTATCTCGTGACATGAGTTGGTTGATGATGTTTGTCTGATTGGT
GGGATTTGTAGGTTGTGGGTTGTGGTGGATGAGCGGTTGTTGTCTTGATG
TGTGGCTTGAATTGGAGTGTCGATGATGAAGTTTGGATAGTTGGTTTTTG
GGGCGTCATGGTAGGTTGACTGAGTTTTGGTATCTGGAAATTTGGTGGTT
GAGTTGCGTAGGACGGGGGCGGTGTGTGGTTGGTGAGGTGGTTTTAAATG
TGCAAACGTGTGTGGTTTGGGTGATAAAGTGGTCAGATTCAGAACAGCCG
TTATCACTCAGCCAAACTCTCCCTATTCTCAGGTGAAACAATGTTTTGCC
ATGGAAGTGAAATACGTTGTAATGGTGATTGACGAAGAAAGCATCGCGAA
TATTTCTCATTAACCAAAGGTATACCAATGTTCCCTTGCTCTTTTCTACT
TTTTGCAAACTTTGCTCTACATTTGTACTCAGCAAAACTTCAATGCTAG

Coding sequence (CDS) from alignment at sc0000611:50462..51110

>TCONS_00027245 ID=TCONS_00027245|Name=TCONS_00027245|organism=Clytia hemisphaerica|type=CDS|length=342bp|location=Sequence derived from alignment at sc0000611:50462..51110 (Clytia hemisphaerica)
TCATGGTAGGTTGACTGAGTTTTGGTATCTGGAAATTTGGTGGTTGAGTT
GCGTAGGACGGGGGCGGTGTGTGGTTGGTGAGGTGGTTTTAAATGTGCAA
ACGTGTGTGGTTTGGGTGATAAAGTGGTCAGATTCAGAACAGCCGTTATC
ACTCAGCCAAACTCTCCCTATTCTCAGGTGAAACAATGTTTTGCCATGGA
AGTGAAATACGTTGTAATGGTGATTGACGAAGAAAGCATCGCGAATATTT
CTCATTAACCAAAGGTATACCAATGTTCCCTTGCTCTTTTCTACTTTTTG
CAAACTTTGCTCTACATTTGTACTCAGCAAAACTTCAATGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015324XLOC_015324Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027245-proteinTCONS_00027245-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027245-exon-sc0000611-1491911889:50462..51110TCONS_00027245-exon-sc0000611-1491911889:50462..51110Clytia hemisphaericaexon
TCONS_00027245-exon-sc0000611-1510915933:50462..51110TCONS_00027245-exon-sc0000611-1510915933:50462..51110Clytia hemisphaericaexon
TCONS_00027245-exon-sc0000611-1575043694:50462..51110TCONS_00027245-exon-sc0000611-1575043694:50462..51110Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000611supercontigsc0000611:50462..51110 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.161262	0.157256	0	0	0	0	0	0	0.0679464	0.0841626	0	0.1074	0.375377	0.723975	1.64826	1.67057	0.363177	1.17878	0.514277	0.627846	0.623671	1.02669	0.554701	0.672405	0	0	0.110561	0	0	0.0911806
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027245 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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