|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027254 ID=TCONS_00027254|Name=TCONS_00027254|organism=Clytia hemisphaerica|type=transcript|length=1089bp
CGACTCGCGAAATTGTCGAGGATTGAAATCGTTGAAGGAAAAGATAACTA
GGACGACCGGTTTGTCTTTAGTGTTCTGACTAAAAACGGGAGGTGAGGGG
CTTTTTTTGGGATGTACCTTTTTCCAAGCAGGGTTAGAAGCTCACACTAC
AATTTGTTTTCTTGGTCTTTATAATcatattaaaatattattttctacCA
CTGCTATTAacaaataagttatgaaaagtTACACAGCTTTCACGGTGAAT
ATGGTACTCTAAGAACACACTAAGGATATACATATAGTCAAGCGCAATAT
AAAGATTTTAGCAAAGTTCTAaagcaatattttcaaaatatcaatcCCTC
CAAGGGCTAACGAAATCCACTAGCATTCCATACAAGGCTAATATGAAACA
CTGATTACGTGCCTCCTCGCAAACGTCATAAATTTCCAGGTTATAATTta
ttgtgttttcttttttttaaagttcgATACCCATATTCATCACTGAGTAA
TTTGACCCAATAATCTTAATCCAATTGAAATGGTATCTCAGGACTTTGCC
CCCTTGCATGCTAACACACACCCATTTAGCGTCCATAACGTCAatttaac
gttaaatgaacgttcaAGCAACGTGATGTGCTATCTGAGTTGCATGCATA
TCGAATCGAGTGAAAACACATAAAACATTATATTATTCTTTCTCATTTGA
TGAACCCTCTGATGAATCTGATAGCgacaaattttccaatttcggTGTCG
TCGAAACTTTGCGTTTTGGGTTCGTAAATTTACGCGGTAACTTCTTGTCG
GTTGTTAAATTGTTATTATCAATGCTattgttgttattattgttgttgtt
gaaatttaGCCCGAGCTCATATTTCGGTTCTGCAGTTTTTTCTTGAGGGC
TCACAGGCTTCGATGAACTgctttttcttctcttcttgTTCTTCAATTGC
ATTTTGGGTGATGTTGTGCGACACAAATCGCTGCTACGAATCACTTTTGT
ACTCATCGTGTAAGTTGGTCGAAAATGAATATTTTCTTATCTGGATTATA
AATATCTACTTTTAATTCAACCTGTTGATTTCTAATTCT Run BLAST on NCBI protein sequence of TCONS_00027254-protein >TCONS_00027254-protein ID=TCONS_00027254-protein|Name=TCONS_00027254-protein|organism=Clytia hemisphaerica|type=polypeptide|length=107bp
MSTKVIRSSDLCRTTSPKMQLKNKKRRKSSSSKPVSPQEKTAEPKYELGL
NFNNNNNNNNSIDNNNLTTDKKLPRKFTNPKRKVSTTPKLENLSLSDSSE
GSSNEKE Run BLAST on NCBI transcript from alignment at sc0000611:139638..140726 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027254 ID=TCONS_00027254|Name=TCONS_00027254|organism=Clytia hemisphaerica|type=transcript|length=1089bp|location=Sequence derived from alignment at sc0000611:139638..140726 (Clytia hemisphaerica)
AGAATTAGAAATCAACAGGTTGAATTAAAAGTAGATATTTATAATCCAGA
TAAGAAAATATTCATTTTCGACCAACTTACACGATGAGTACAAAAGTGAT
TCGTAGCAGCGATTTGTGTCGCACAACATCACCCAAAATGCAATTGAAGA
AcaagaagagaagaaaaagcAGTTCATCGAAGCCTGTGAGCCCTCAAGAA
AAAACTGCAGAACCGAAATATGAGCTCGGGCtaaatttcaacaacaacaa
taataacaacaatAGCATTGATAATAACAATTTAACAACCGACAAGAAGT
TACCGCGTAAATTTACGAACCCAAAACGCAAAGTTTCGACGACAccgaaa
ttggaaaatttgtcGCTATCAGATTCATCAGAGGGTTCATCAAATGAGAA
AGAATAATATAATGTTTTATGTGTTTTCACTCGATTCGATATGCATGCAA
CTCAGATAGCACATCACGTTGCTtgaacgttcatttaacgttaaatTGAC
GTTATGGACGCTAAATGGGTGTGTGTTAGCATGCAAGGGGGCAAAGTCCT
GAGATACCATTTCAATTGGATTAAGATTATTGGGTCAAATTACTCAGTGA
TGAATATGGGTATcgaactttaaaaaaaagaaaacacaataAATTATAAC
CTGGAAATTTATGACGTTTGCGAGGAGGCACGTAATCAGTGTTTCATATT
AGCCTTGTATGGAATGCTAGTGGATTTCGTTAGCCCTTGGAGGgattgat
attttgaaaatattgcttTAGAACTTTGCTAAAATCTTTATATTGCGCTT
GACTATATGTATATCCTTAGTGTGTTCTTAGAGTACCATATTCACCGTGA
AAGCTGTGTAacttttcataacttatttgtTAATAGCAGTGgtagaaaat
aatattttaatatgATTATAAAGACCAAGAAAACAAATTGTAGTGTGAGC
TTCTAACCCTGCTTGGAAAAAGGTACATCCCAAAAAAAGCCCCTCACCTC
CCGTTTTTAGTCAGAACACTAAAGACAAACCGGTCGTCCTAGTTATCTTT
TCCTTCAACGATTTCAATCCTCGACAATTTCGCGAGTCG Coding sequence (CDS) from alignment at sc0000611:139638..140726 >TCONS_00027254 ID=TCONS_00027254|Name=TCONS_00027254|organism=Clytia hemisphaerica|type=CDS|length=324bp|location=Sequence derived from alignment at sc0000611:139638..140726 (Clytia hemisphaerica)
ATGAGTACAAAAGTGATTCGTAGCAGCGATTTGTGTCGCACAACATCACC
CAAAATGCAATTGAAGAAcaagaagagaagaaaaagcAGTTCATCGAAGC
CTGTGAGCCCTCAAGAAAAAACTGCAGAACCGAAATATGAGCTCGGGCta
aatttcaacaacaacaataataacaacaatAGCATTGATAATAACAATTT
AACAACCGACAAGAAGTTACCGCGTAAATTTACGAACCCAAAACGCAAAG
TTTCGACGACAccgaaattggaaaatttgtcGCTATCAGATTCATCAGAG
GGTTCATCAAATGAGAAAGAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027254-exon-sc0000611-1491911889:139638..140726 | TCONS_00027254-exon-sc0000611-1491911889:139638..140726 | Clytia hemisphaerica | exon |
| TCONS_00027254-exon-sc0000611-1510915933:139638..140726 | TCONS_00027254-exon-sc0000611-1510915933:139638..140726 | Clytia hemisphaerica | exon |
| TCONS_00027254-exon-sc0000611-1575043694:139638..140726 | TCONS_00027254-exon-sc0000611-1575043694:139638..140726 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000611 | supercontig | sc0000611:139638..140726 . |
Blast
The following BLAST results are available for this feature:
|
