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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027256 ID=TCONS_00027256|Name=TCONS_00027256|organism=Clytia hemisphaerica|type=transcript|length=985bp
AAGTACGTCGATCAATGCTTTGGCGGTTGTACTTTTGACAAAAGCAATCT
CTGGATAACGTGAACGCTTATCGATGATAAAGAGAACGTATTTGTTGAGA
ACTGGGATTGGTCCCAGGTAGTCAATGTGCAAAGTGTCCCACACGGCGTC
AGGAACTTCGACGGGTTTGATCGGAGCAGGTGGTTTGGATGGGCCAGTAC
ATTGGCATGCGATTCAATTCTTGATACGATTTTCGACCATCTTATCCATG
CCGAAAAAGAATACTTTCGTTTGTAAAAGTTGTTTCGTCTTTTCGATGCC
TTGATGTCCAACGTGACAAATGCGTACAGCATCTTCGTAGAATTTCGTAG
GTAGAACGATTCGGTTACCTTTGAGGATGACACCATGTTTGAGATTGACG
GTCAGTTCGTCTTTGACTTTACGAAACTGTTTAAGCAAGTCTATATTAAC
CTTACGTAAATGTTCATGTTTCTGTGGCTCATCTAATTTGTACCAATCGT
TGGCTTGTATCATCTCCTTGAGGATTTGTGATTCGATTTCGTTTTCTGTT
CCCGTAGCAATGTTCTCAATCTTGAAGGCTTTTGGTGTTGCAAAATTTGT
AACCATGTTAACGTAAGTCTCAATGTAACTGTTCGTTGTATTTGGTTGAT
CAACCGGATGCCGACTTGTGTAATCAGAAATGTTATCGTCTGAAGAAACG
TGTTTGGCTTCGAGGTCATAATCTTGTAAACGTAAAAGCATTCTTTCGAT
TCGAAGCGGTATGTTGCGTTTCTTATTGTTCAAAATGTTAATTAACGCTT
TGTGGTCATTAAATAACGTAAAATTTCGACCGAAAAGGTAGATATGGCTC
TTCTCAGCAGCGTAAACTATACCAAGGCATTCGCGTTCGATTTGGCTGTA
GCGACATTCGACGTCTTTTAAAGCACGAGACGAGTAGTTAATAACATGTA
AATCGTCTTTACCGGGGGTACGTTGTAATAAAATA Run BLAST on NCBI protein sequence of TCONS_00027256-protein >TCONS_00027256-protein ID=TCONS_00027256-protein|Name=TCONS_00027256-protein|organism=Clytia hemisphaerica|type=polypeptide|length=256bp
ILLQRTPGKDDLHVINYSSRALKDVECRYSQIERECLGIVYAAEKSHIYL
FGRNFTLFNDHKALINILNNKKRNIPLRIERMLLRLQDYDLEAKHVSSDD
NISDYTSRHPVDQPNTTNSYIETYVNMVTNFATPKAFKIENIATGTENEI
ESQILKEMIQANDWYKLDEPQKHEHLRKVNIDLLKQFRKVKDELTVNLKH
GVILKGNRIVLPTKFYEDAVRICHVGHQGIEKTKQLLQTKVFFFGMDKMV
ENRIKN Run BLAST on NCBI transcript from alignment at sc0000611:190453..191437 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027256 ID=TCONS_00027256|Name=TCONS_00027256|organism=Clytia hemisphaerica|type=transcript|length=985bp|location=Sequence derived from alignment at sc0000611:190453..191437 (Clytia hemisphaerica)
TATTTTATTACAACGTACCCCCGGTAAAGACGATTTACATGTTATTAACT
ACTCGTCTCGTGCTTTAAAAGACGTCGAATGTCGCTACAGCCAAATCGAA
CGCGAATGCCTTGGTATAGTTTACGCTGCTGAGAAGAGCCATATCTACCT
TTTCGGTCGAAATTTTACGTTATTTAATGACCACAAAGCGTTAATTAACA
TTTTGAACAATAAGAAACGCAACATACCGCTTCGAATCGAAAGAATGCTT
TTACGTTTACAAGATTATGACCTCGAAGCCAAACACGTTTCTTCAGACGA
TAACATTTCTGATTACACAAGTCGGCATCCGGTTGATCAACCAAATACAA
CGAACAGTTACATTGAGACTTACGTTAACATGGTTACAAATTTTGCAACA
CCAAAAGCCTTCAAGATTGAGAACATTGCTACGGGAACAGAAAACGAAAT
CGAATCACAAATCCTCAAGGAGATGATACAAGCCAACGATTGGTACAAAT
TAGATGAGCCACAGAAACATGAACATTTACGTAAGGTTAATATAGACTTG
CTTAAACAGTTTCGTAAAGTCAAAGACGAACTGACCGTCAATCTCAAACA
TGGTGTCATCCTCAAAGGTAACCGAATCGTTCTACCTACGAAATTCTACG
AAGATGCTGTACGCATTTGTCACGTTGGACATCAAGGCATCGAAAAGACG
AAACAACTTTTACAAACGAAAGTATTCTTTTTCGGCATGGATAAGATGGT
CGAAAATCGTATCAAGAATTGAATCGCATGCCAATGTACTGGCCCATCCA
AACCACCTGCTCCGATCAAACCCGTCGAAGTTCCTGACGCCGTGTGGGAC
ACTTTGCACATTGACTACCTGGGACCAATCCCAGTTCTCAACAAATACGT
TCTCTTTATCATCGATAAGCGTTCACGTTATCCAGAGATTGCTTTTGTCA
AAAGTACAACCGCCAAAGCATTGATCGACGTACTT Coding sequence (CDS) from alignment at sc0000611:190453..191437 >TCONS_00027256 ID=TCONS_00027256|Name=TCONS_00027256|organism=Clytia hemisphaerica|type=CDS|length=771bp|location=Sequence derived from alignment at sc0000611:190453..191437 (Clytia hemisphaerica)
ATTTTATTACAACGTACCCCCGGTAAAGACGATTTACATGTTATTAACTA
CTCGTCTCGTGCTTTAAAAGACGTCGAATGTCGCTACAGCCAAATCGAAC
GCGAATGCCTTGGTATAGTTTACGCTGCTGAGAAGAGCCATATCTACCTT
TTCGGTCGAAATTTTACGTTATTTAATGACCACAAAGCGTTAATTAACAT
TTTGAACAATAAGAAACGCAACATACCGCTTCGAATCGAAAGAATGCTTT
TACGTTTACAAGATTATGACCTCGAAGCCAAACACGTTTCTTCAGACGAT
AACATTTCTGATTACACAAGTCGGCATCCGGTTGATCAACCAAATACAAC
GAACAGTTACATTGAGACTTACGTTAACATGGTTACAAATTTTGCAACAC
CAAAAGCCTTCAAGATTGAGAACATTGCTACGGGAACAGAAAACGAAATC
GAATCACAAATCCTCAAGGAGATGATACAAGCCAACGATTGGTACAAATT
AGATGAGCCACAGAAACATGAACATTTACGTAAGGTTAATATAGACTTGC
TTAAACAGTTTCGTAAAGTCAAAGACGAACTGACCGTCAATCTCAAACAT
GGTGTCATCCTCAAAGGTAACCGAATCGTTCTACCTACGAAATTCTACGA
AGATGCTGTACGCATTTGTCACGTTGGACATCAAGGCATCGAAAAGACGA
AACAACTTTTACAAACGAAAGTATTCTTTTTCGGCATGGATAAGATGGTC
GAAAATCGTATCAAGAATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027256-exon-sc0000611-1491911889:190453..191437 | TCONS_00027256-exon-sc0000611-1491911889:190453..191437 | Clytia hemisphaerica | exon |
| TCONS_00027256-exon-sc0000611-1510915933:190453..191437 | TCONS_00027256-exon-sc0000611-1510915933:190453..191437 | Clytia hemisphaerica | exon |
| TCONS_00027256-exon-sc0000611-1575043694:190453..191437 | TCONS_00027256-exon-sc0000611-1575043694:190453..191437 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000611 | supercontig | sc0000611:190453..191437 . |
Blast
The following BLAST results are available for this feature:
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