TCONS_00027267 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027267
Unique NameTCONS_00027267
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length446

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027267 ID=TCONS_00027267|Name=TCONS_00027267|organism=Clytia hemisphaerica|type=transcript|length=446bp
GAGTATAATTGCggctttgattttgatttcattaaCTTATTCGAATATCA
CTCGTCGAGTAGTAAAATTCCATTGCAACTTCTTTCCAACTTGCCGTACA
GACGGGTCCGTCTTCTAATAAAATCGACCAATTCCACAAATCGCATTGAG
AAAACTGATTGAGATGGTATATTTCTACACCTCTTGGCATTTGGCTCTCC
ACTCTTTGCTTAAGAAAGAAGAGGTGCTGTACAGAGTCGTTTCTATGTAG
TCTTTTCAAGATGTCTGTTATTTCTTCGATGCTCACGTCTCTGGATTTAA
GCAGGCTCTCGAAAAACTCGAACGAAGCGCTACCTCCTCCATAAGCAGTT
AGCTTTACTTCTTGGGTGATGACTTTACTATGAAATAGAAACTCGGTCAA
TTCCAGATGACGTCCACTTTCATCAATCAACATAATGATATTGTCC
Run BLAST on NCBI

protein sequence of TCONS_00027267-protein

>TCONS_00027267-protein ID=TCONS_00027267-protein|Name=TCONS_00027267-protein|organism=Clytia hemisphaerica|type=polypeptide|length=137bp
DNIIMLIDESGRHLELTEFLFHSKVITQEVKLTAYGGGSASFEFFESLLK
SRDVSIEEITDILKRLHRNDSVQHLFFLKQRVESQMPRGVEIYHLNQFSQ
CDLWNWSILLEDGPVCTASWKEVAMEFYYSTSDIRIS
Run BLAST on NCBI

transcript from alignment at sc0000612:84496..84941

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027267 ID=TCONS_00027267|Name=TCONS_00027267|organism=Clytia hemisphaerica|type=transcript|length=446bp|location=Sequence derived from alignment at sc0000612:84496..84941 (Clytia hemisphaerica)
GGACAATATCATTATGTTGATTGATGAAAGTGGACGTCATCTGGAATTGA
CCGAGTTTCTATTTCATAGTAAAGTCATCACCCAAGAAGTAAAGCTAACT
GCTTATGGAGGAGGTAGCGCTTCGTTCGAGTTTTTCGAGAGCCTGCTTAA
ATCCAGAGACGTGAGCATCGAAGAAATAACAGACATCTTGAAAAGACTAC
ATAGAAACGACTCTGTACAGCACCTCTTCTTTCTTAAGCAAAGAGTGGAG
AGCCAAATGCCAAGAGGTGTAGAAATATACCATCTCAATCAGTTTTCTCA
ATGCGATTTGTGGAATTGGTCGATTTTATTAGAAGACGGACCCGTCTGTA
CGGCAAGTTGGAAAGAAGTTGCAATGGAATTTTACTACTCGACGAGTGAT
ATTCGAATAAGttaatgaaatcaaaatcaaagccGCAATTATACTC

Coding sequence (CDS) from alignment at sc0000612:84496..84941

>TCONS_00027267 ID=TCONS_00027267|Name=TCONS_00027267|organism=Clytia hemisphaerica|type=CDS|length=414bp|location=Sequence derived from alignment at sc0000612:84496..84941 (Clytia hemisphaerica)
GACAATATCATTATGTTGATTGATGAAAGTGGACGTCATCTGGAATTGAC
CGAGTTTCTATTTCATAGTAAAGTCATCACCCAAGAAGTAAAGCTAACTG
CTTATGGAGGAGGTAGCGCTTCGTTCGAGTTTTTCGAGAGCCTGCTTAAA
TCCAGAGACGTGAGCATCGAAGAAATAACAGACATCTTGAAAAGACTACA
TAGAAACGACTCTGTACAGCACCTCTTCTTTCTTAAGCAAAGAGTGGAGA
GCCAAATGCCAAGAGGTGTAGAAATATACCATCTCAATCAGTTTTCTCAA
TGCGATTTGTGGAATTGGTCGATTTTATTAGAAGACGGACCCGTCTGTAC
GGCAAGTTGGAAAGAAGTTGCAATGGAATTTTACTACTCGACGAGTGATA
TTCGAATAAGttaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015344XLOC_015344Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027267-proteinTCONS_00027267-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027267-exon-sc0000612-1491911889:84496..84941TCONS_00027267-exon-sc0000612-1491911889:84496..84941Clytia hemisphaericaexon
TCONS_00027267-exon-sc0000612-1510915933:84496..84941TCONS_00027267-exon-sc0000612-1510915933:84496..84941Clytia hemisphaericaexon
TCONS_00027267-exon-sc0000612-1575043694:84496..84941TCONS_00027267-exon-sc0000612-1575043694:84496..84941Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000612supercontigsc0000612:84496..84941 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.201872	0.159522	0.769827	0.360351	0.378436	0.312502	0	0.199392	0.0995575	0	0.765016	1.55074	1.12376	0.575907	1.27303	0	0.434201	0.635364	0.514912	0.46813	0.482163	0	0.410523	0.657183	0.16615	0.507841
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027267 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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