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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027281 ID=TCONS_00027281|Name=TCONS_00027281|organism=Clytia hemisphaerica|type=transcript|length=783bp
aagtgaatTATTTCGAGTCATTTAAAAATGCCACATTTTCGAAGAATGAA
AAGGGAAAGATTTTATCTAGAGACTTACTCAAATCCCCCCACTCGTGCAA
AAATCATCATTCCAATGCTGAATGCTGACAATCTTCGAGGACTTGCTTTT
AAACCCATTGCAAAAGTATTTCAATATTTGCGTTAATTTGGCTGGAAGCT
CTTTGTCTTAATGTAATCtcgtgaaaaataaatataaatagaaTAGAAAA
AGGCGTACAAAATATACATTACAGAATTTAGTAAGAAAATATCATatgaa
aaatatccaaaaatccaaaattataACATCTCAAAGTATCAAAAAATGTT
TGTCATAAAAAACAATATTTCCTGTAGTGCCATTAAAAAATATccctaaa
tttgaaaatttgacgtgACTATTTCGACTTAGGCTAGGCTCTTCAAGTTT
TACAATTAGTTACACCATACAGATTGATTTGTCAAATGTAACTTTCCTTT
CAAGTTAATACTGCAGAAAAACAAGTCGATGGTCGGGTAGTTCGAAGTAA
AAAGCTCAgttgaatgaaaaataatggTTTTGCTGGTCTAGTGACACTTT
GAGCCTCTTACATCGTGTTATTCAATACAATAATAtgtgcaaaatttaaa
aaaaaaataaaaaaaattgtctttaaatgctttcttttcatttggctGAT
GTTTGACTGGTTTCatattttcgtgattttaaggctttaatgatcttaaa
atattcttatgtCGTGCTTTCTTTACTCACTTA Run BLAST on NCBI transcript from alignment at sc0000613:50300..51900+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027281 ID=TCONS_00027281|Name=TCONS_00027281|organism=Clytia hemisphaerica|type=transcript|length=1601bp|location=Sequence derived from alignment at sc0000613:50300..51900+ (Clytia hemisphaerica)
aagtgaatTATTTCGAGTCATTTAAAAATGCCACATTTTCGAAGAATGAA
AAGGGAAAGATTTTATCTAGAGACTTACTCAAATCCCCCCACTCGTGCAA
AAATCATCATTCCAATGCTGAATGCTGACAATCTTCGAGGACTTGCTTTT
AAACCCATTGCAAAAGTATTTCAATATTTGCGTTAATTTGGCTGGAAGCT
CTTTGTCTTAATGTAATCtcgtgaaaaataaatataaatagaaTAGAAAA
AGGCGTACAAAATATACATTACAGAATTTAGTAAAGGCcgaggtaaacga
ttccaacatttcatccaacattgaaattgaaatgttgAACGAATGTTGGA
TGAATTTTGGAAAGGTGTTGGATCTCCTTAAAATCGTTTCGTCGCAATGT
CCAACATCATTTTCATCCAAATGGGTGTTCATTCAttctttttctaattc
attcttttcaaattaGAAATGGCGAGAATTTTTATACCCAGTTTAACCAG
TGCCACTACTGCTGTTCATGCGGACAAAAATTATAGTCTAACAATTGGAA
TTTTAAAATGCAGAGAAAATTCTGTCGAAAAATCGACTCTTATGGtgcaa
tttcttgaaatttatttatatctatttcaaagcaaaaaatggtcaaattt
tctaaaattttgcaacaaaaactatgttctcattttttacacatatacag
tgcattttgggaagcctgaaaaactaccattttaaatttgttacgagatt
tttcgaatttttgaccaaaaaacattcgattctaTTTCTAATGACGTCAT
TCCCTTTCAATGTGTTGGATGTGAGCTGAGTAAACGAATCCAACATGATC
CAACAcgaaaaaaagaagtaaatgttggacaaaatgtttgatggcgatca
aactcCCATCCAACACTTTTTTCCTCCTtccaacataattttttcttcct
ttccgATTTTTACATTCgagtaaacgattccaacattccgTCCAACAGAG
AGAAAATGGCATGTTggatggaatttggaatcgtttacctcgGCCTNAAA
TAGAAATAGAATAGAAAAAGGCGTACAAAATATACATTACAGAATTTAGT
AAGAAAATATCATatgaaaaatatccaaaaatccaaaattataACATCTC
AAAGTATCAAAAAATGTTTGTCATAAAAAACAATATTTCCTGTAGTGCCA
TTAAAAAATATccctaaatttgaaaatttgacgtgACTATTTCGACTTAG
GCTAGGCTCTTCAAGTTTTACAATTAGTTACACCATACAGATTGATTTGT
CAAATGTAACTTTCCTTTCAAGTTAATACTGCAGAAAAACAAGTCGATGG
TCGGGTAGTTCGAAGTAAAAAGCTCAgttgaatgaaaaataatggTTTTG
CTGGTCTAGTGACACTTTGAGCCTCTTACATCGTGTTATTCAATACAATA
ATAtgtgcaaaatttaaaaaaaaaataaaaaaaattgtctttaaatgctt
tcttttcatttggctGATGTTTGACTGGTTTCatattttcgtgattttaa
ggctttaatgatcttaaaatattcttatgtCGTGCTTTCTTTACTCACTT
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027281-exon-sc0000613-1491911889:50300..50551 | TCONS_00027281-exon-sc0000613-1491911889:50300..50551 | Clytia hemisphaerica | exon |
| TCONS_00027281-exon-sc0000613-1510915933:50300..50551 | TCONS_00027281-exon-sc0000613-1510915933:50300..50551 | Clytia hemisphaerica | exon |
| TCONS_00027281-exon-sc0000613-1575043694:50300..50551 | TCONS_00027281-exon-sc0000613-1575043694:50300..50551 | Clytia hemisphaerica | exon |
| TCONS_00027281-exon-sc0000613-1491911889:51370..51900 | TCONS_00027281-exon-sc0000613-1491911889:51370..51900 | Clytia hemisphaerica | exon |
| TCONS_00027281-exon-sc0000613-1510915933:51370..51900 | TCONS_00027281-exon-sc0000613-1510915933:51370..51900 | Clytia hemisphaerica | exon |
| TCONS_00027281-exon-sc0000613-1575043694:51370..51900 | TCONS_00027281-exon-sc0000613-1575043694:51370..51900 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000613 | supercontig | sc0000613:50300..51900 + |
Blast
The following BLAST results are available for this feature:
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